AT4G23760

Cox19-like CHCH family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0017127
Physical Location & Seq
Forward (+)
12381830 .. 12383041
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G23760.1

Sequence Viewer

Length: 351 bp
ATGAACTCAGATGGGCTTTATGGCCCATTAAAGATTTTGTTCTTTTTTGAGTCGTCGCCCCCGAGATCGTGGGTGATCCGTCTCACTGGAAACATCTTTGTCTCTCTGAGAAACCCCTCTTTAGGGTTTATACCTTCAATGGAGAAACAGAGTACTCAACCAATTTGCGGCCAAGAGGCTCTCCAACTTCTCAATTGCGTCGCGGAGTCTCCTTTCGATCAAGAGAAATGCGTCCGATTTTTGCAATCTCTCAGAGAATGCGTTCTATCAAAGAAAGTAAAGAAGTTCTCGATACCGAGTCAAGATCACGACTCTGAGGGAGCAGCTTCAGCTACAAAGAGACCTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.94

Weight (kDa)

8.78

Isoelectric Point (pI)

71.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017127)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23760
fragaria_vesca FvH4_5g03940
malus_domestica MD06G1100800.v1.1
prunus_persica Prupe.5G114300_v2.0.a1
pyrus_communis pycom06g09600
rosa_chinensis RchiOBHm_Chr7g0195561
rosa_roxburghii Rroxscaffold_3G00260360
rosa_rugosa Rorug07G0024200
rosa_samantha Rh7AG151900 Rh7BG153600 Rh7CG157100 Rh7DG152900
rosa_wichuraiana Rw7G012970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 203
AciI CCGC 2 cut(s) 168, 203
AclWI GGATC 1 cut(s) 70
AcoI YGGCCR 1 cut(s) 169
AcuI CTGAAG 1 cut(s) 312
AfaI GTAC 1 cut(s) 154
AfiI CCNNNNNNNGG 3 cut(s) 122, 123, 167
AgsI TTSAA 1 cut(s) 138
AluBI AGCT 2 cut(s) 326, 332
AluI AGCT 2 cut(s) 326, 332
Alw26I GTCTC 4 cut(s) 86, 106, 213, 334
AlwI GGATC 1 cut(s) 70
Ama87I CYCGRG 1 cut(s) 61
AoxI GGCC 2 cut(s) 22, 169
ApeKI GCWGC 1 cut(s) 323
Asp700I GAANNNNTTC 1 cut(s) 261
AspS9I GGNCC 1 cut(s) 23
AsuHPI GGTGA 1 cut(s) 85
AvaI CYCGRG 1 cut(s) 61
BbvI GCAGC 1 cut(s) 335
BccI CCATC 1 cut(s) 5
BcoDI GTCTC 4 cut(s) 86, 106, 213, 334
BisI GCNGC 2 cut(s) 169, 324
BlsI GCNGC 2 cut(s) 170, 325
BmcAI AGTACT 1 cut(s) 154
BmeT110I CYCGRG 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 23
BsaI GGTCTC 1 cut(s) 334
Bsc4I CCNNNNNNNGG 3 cut(s) 122, 123, 167
Bse1I ACTGG 1 cut(s) 91
BseLI CCNNNNNNNGG 3 cut(s) 122, 123, 167
BseMII CTCAG 4 cut(s) 21, 98, 265, 306
BseNI ACTGG 1 cut(s) 91
BseXI GCAGC 1 cut(s) 335
Bsh1236I CGCG 1 cut(s) 203
BshFI GGCC 2 cut(s) 24, 171
BsiHKCI CYCGRG 1 cut(s) 61
BslI CCNNNNNNNGG 3 cut(s) 122, 123, 167
BsmAI GTCTC 4 cut(s) 86, 106, 213, 334
BsmBI CGTCTC 1 cut(s) 86
BsmI GAATGC 1 cut(s) 263
BsnI GGCC 2 cut(s) 24, 171
Bso31I GGTCTC 1 cut(s) 334
BsoBI CYCGRG 1 cut(s) 61
Bsp143I GATC 4 cut(s) 65, 75, 217, 304
BspACI CCGC 2 cut(s) 168, 203
BspANI GGCC 2 cut(s) 24, 171
BspCNI CTCAG 4 cut(s) 20, 99, 264, 307
BspFNI CGCG 1 cut(s) 203
BspPI GGATC 1 cut(s) 70
BspTNI GGTCTC 1 cut(s) 334
BsrI ACTGG 1 cut(s) 91
BssMI GATC 4 cut(s) 65, 75, 217, 304
BstDEI CTNAG 4 cut(s) 7, 107, 251, 315
BstFNI CGCG 1 cut(s) 203
BstKTI GATC 4 cut(s) 68, 78, 220, 307
BstMAI GTCTC 4 cut(s) 86, 106, 213, 334
BstMBI GATC 4 cut(s) 65, 75, 217, 304
BstMWI GCNNNNNNNGC 1 cut(s) 329
BstUI CGCG 1 cut(s) 203
BstV1I GCAGC 1 cut(s) 335
BsuRI GGCC 2 cut(s) 24, 171
BtsIMutI CAGTG 1 cut(s) 84
Cfr13I GGNCC 1 cut(s) 23
CseI GACGC 2 cut(s) 187, 220
Csp6I GTAC 1 cut(s) 153
CviJI RGCY 6 cut(s) 16, 24, 171, 179, 326, 332
CviKI_1 RGCY 6 cut(s) 16, 24, 171, 179, 326, 332
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 4 cut(s) 7, 107, 251, 315
DpnI GATC 4 cut(s) 67, 77, 219, 306
DpnII GATC 4 cut(s) 65, 75, 217, 304
EaeI YGGCCR 1 cut(s) 169
Eco31I GGTCTC 1 cut(s) 334
Eco57I CTGAAG 1 cut(s) 312
Eco88I CYCGRG 1 cut(s) 61
Esp3I CGTCTC 1 cut(s) 86
FaiI YATR 3 cut(s) 21, 131, 349
Fnu4HI GCNGC 2 cut(s) 169, 324
Fsp4HI GCNGC 2 cut(s) 169, 324
GluI GCNGC 2 cut(s) 169, 324
HaeIII GGCC 2 cut(s) 24, 171
HgaI GACGC 2 cut(s) 187, 220
HinfI GANTC 4 cut(s) 50, 206, 298, 311
HphI GGTGA 1 cut(s) 85
Hpy188I TCNGA 5 cut(s) 10, 108, 236, 254, 316
Hpy188III TCNNGA 4 cut(s) 221, 289, 302, 308
Hpy99I CGWCG 2 cut(s) 58, 203
HpyAV CCTTC 1 cut(s) 144
HpyCH4V TGCA 1 cut(s) 244
HpyF10VI GCNNNNNNNGC 1 cut(s) 329
HpyF3I CTNAG 4 cut(s) 7, 107, 251, 315
Kzo9I GATC 4 cut(s) 65, 75, 217, 304
LmnI GCTCC 1 cut(s) 320
LpnPI CCDG 1 cut(s) 72
Lsp1109I GCAGC 1 cut(s) 335
MalI GATC 4 cut(s) 67, 77, 219, 306
MboI GATC 4 cut(s) 65, 75, 217, 304
MfeI CAATTG 1 cut(s) 193
MluCI AATT 2 cut(s) 162, 193
MlyI GAGTC 4 cut(s) 59, 215, 305, 307
MmeI TCCRAC 1 cut(s) 208
MnlI CCTC 3 cut(s) 127, 169, 310
MroXI GAANNNNTTC 1 cut(s) 261
MseI TTAA 1 cut(s) 29
MunI CAATTG 1 cut(s) 193
Mva1269I GAATGC 1 cut(s) 263
MvnI CGCG 1 cut(s) 203
MwoI GCNNNNNNNGC 1 cut(s) 329
NdeII GATC 4 cut(s) 65, 75, 217, 304
PcsI WCGNNNNNNNCGW 1 cut(s) 59
PctI GAATGC 1 cut(s) 263
PdmI GAANNNNTTC 1 cut(s) 261
PkrI GCNGC 2 cut(s) 170, 325
PleI GAGTC 4 cut(s) 58, 214, 305, 306
PpsI GAGTC 4 cut(s) 58, 214, 305, 306
PspPI GGNCC 1 cut(s) 23
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
SaqAI TTAA 1 cut(s) 29
SatI GCNGC 2 cut(s) 169, 324
Sau3AI GATC 4 cut(s) 65, 75, 217, 304
Sau96I GGNCC 1 cut(s) 23
ScaI AGTACT 1 cut(s) 154
SchI GAGTC 4 cut(s) 59, 215, 305, 307
SetI ASST 4 cut(s) 136, 328, 334, 346
Sse9I AATT 2 cut(s) 162, 193
SsiI CCGC 2 cut(s) 168, 203
TaqI TCGA 2 cut(s) 216, 290
TasI AATT 2 cut(s) 162, 193
TatI WGTACW 1 cut(s) 152
TauI GCSGC 1 cut(s) 171
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TscAI CASTG 1 cut(s) 91
TseI GCWGC 1 cut(s) 323
TspDTI ATGAA 2 cut(s) 17, 336
TspGWI ACGGA 1 cut(s) 68
TspRI CASTG 1 cut(s) 91
XmnI GAANNNNTTC 1 cut(s) 261
ZrmI AGTACT 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.