MD06G1100800.v1.1

Cox19-like CHCH family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0017127
Physical Location & Seq
Forward (+)
23749540 .. 23751204
1665 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1100800.v1.1.491

Sequence Viewer

Length: 192 bp
ATGGAGGACGCTCGTGGCAAGGCGGTGTGCGGCCAGGAGGCTCTGGATCTGCTCAACTGCGTCGCTCAGTCTCCTTTCGATCAAGACAGATGCGTTCGCCTCTTGCATTCCCTGCGAGAATGCGTGCTCAATAAGAAAGTGAAGAAGTTTTCACTAGCTGACCAGGAACAGAAGGATGCAAAGCCACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

64

Amino Acids

7.13

Weight (kDa)

7.68

Isoelectric Point (pI)

45.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017127)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23760
fragaria_vesca FvH4_5g03940
malus_domestica MD06G1100800.v1.1
prunus_persica Prupe.5G114300_v2.0.a1
pyrus_communis pycom06g09600
rosa_chinensis RchiOBHm_Chr7g0195561
rosa_roxburghii Rroxscaffold_3G00260360
rosa_rugosa Rorug07G0024200
rosa_samantha Rh7AG151900 Rh7BG153600 Rh7CG157100 Rh7DG152900
rosa_wichuraiana Rw7G012970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 23, 30
AclWI GGATC 1 cut(s) 54
AcoI YGGCCR 1 cut(s) 31
AjnI CCWGG 2 cut(s) 33, 162
AluBI AGCT 1 cut(s) 158
AluI AGCT 1 cut(s) 158
Alw21I GWGCWC 1 cut(s) 129
Alw26I GTCTC 1 cut(s) 75
AlwI GGATC 1 cut(s) 54
AoxI GGCC 1 cut(s) 31
BauI CACGAG 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 129
BciT130I CCWGG 2 cut(s) 35, 164
BcoDI GTCTC 1 cut(s) 75
BfaI CTAG 1 cut(s) 155
BisI GCNGC 1 cut(s) 31
BlsI GCNGC 1 cut(s) 32
Bme1390I CCNGG 2 cut(s) 35, 164
BmrFI CCNGG 2 cut(s) 35, 164
BmsI GCATC 2 cut(s) 80, 166
BseBI CCWGG 2 cut(s) 35, 164
BseGI GGATG 1 cut(s) 181
BseMII CTCAG 1 cut(s) 80
BshFI GGCC 1 cut(s) 33
BsiHKAI GWGCWC 1 cut(s) 129
BsmAI GTCTC 1 cut(s) 75
BsmI GAATGC 2 cut(s) 106, 125
BsnI GGCC 1 cut(s) 33
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 2 cut(s) 46, 79
BspACI CCGC 2 cut(s) 23, 30
BspANI GGCC 1 cut(s) 33
BspCNI CTCAG 1 cut(s) 79
BspPI GGATC 1 cut(s) 54
BssMI GATC 2 cut(s) 46, 79
BssSI CACGAG 1 cut(s) 12
Bst2BI CACGAG 1 cut(s) 12
Bst2UI CCWGG 2 cut(s) 35, 164
BstAPI GCANNNNNTGC 1 cut(s) 112
BstC8I GCNNGC 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 66
BstF5I GGATG 1 cut(s) 181
BstKTI GATC 2 cut(s) 49, 82
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 2 cut(s) 46, 79
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstNI CCWGG 2 cut(s) 35, 164
BstSCI CCNGG 2 cut(s) 33, 162
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
BsuRI GGCC 1 cut(s) 33
BtsCI GGATG 1 cut(s) 181
Cac8I GCNNGC 1 cut(s) 125
CseI GACGC 2 cut(s) 17, 49
CviJI RGCY 4 cut(s) 33, 41, 158, 184
CviKI_1 RGCY 4 cut(s) 33, 41, 158, 184
DdeI CTNAG 1 cut(s) 66
DpnI GATC 2 cut(s) 48, 81
DpnII GATC 2 cut(s) 46, 79
EaeI YGGCCR 1 cut(s) 31
EcoRII CCWGG 2 cut(s) 33, 162
Fnu4HI GCNGC 1 cut(s) 31
FokI GGATG 1 cut(s) 188
Fsp4HI GCNGC 1 cut(s) 31
FspBI CTAG 1 cut(s) 155
GluI GCNGC 1 cut(s) 31
HaeIII GGCC 1 cut(s) 33
HgaI GACGC 2 cut(s) 17, 49
Hpy188III TCNNGA 2 cut(s) 44, 83
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 1 cut(s) 166
HpyCH4V TGCA 2 cut(s) 106, 179
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpyF3I CTNAG 1 cut(s) 66
Kzo9I GATC 2 cut(s) 46, 79
LpnPI CCDG 6 cut(s) 20, 29, 47, 125, 149, 176
LweI GCATC 2 cut(s) 80, 166
MaeI CTAG 1 cut(s) 155
MalI GATC 2 cut(s) 48, 81
MboI GATC 2 cut(s) 46, 79
MboII GAAGA 1 cut(s) 154
MflI RGATCY 1 cut(s) 46
MhlI GDGCHC 1 cut(s) 129
MnlI CCTC 2 cut(s) 31, 110
MspR9I CCNGG 2 cut(s) 35, 164
Mva1269I GAATGC 2 cut(s) 106, 125
MvaI CCWGG 2 cut(s) 35, 164
MwoI GCNNNNNNNGC 1 cut(s) 112
NdeII GATC 2 cut(s) 46, 79
PctI GAATGC 2 cut(s) 106, 125
PkrI GCNGC 1 cut(s) 32
Psp6I CCWGG 2 cut(s) 33, 162
PspGI CCWGG 2 cut(s) 33, 162
PsuI RGATCY 1 cut(s) 46
SatI GCNGC 1 cut(s) 31
Sau3AI GATC 2 cut(s) 46, 79
ScrFI CCNGG 2 cut(s) 35, 164
SduI GDGCHC 1 cut(s) 129
SetI ASST 1 cut(s) 160
SfaNI GCATC 2 cut(s) 80, 166
SsiI CCGC 2 cut(s) 23, 30
SspMI CTAG 1 cut(s) 155
StyD4I CCNGG 2 cut(s) 33, 162
TaqI TCGA 1 cut(s) 78
TauI GCSGC 1 cut(s) 33
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.