Rh7BG153600

Cox19-like CHCH family protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Reverse (-)
11377090 .. 11378361
1272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG153600.1

Sequence Viewer

Length: 204 bp
ATGGAGGAAGCTCGAGGTCAAGCGGTGTGTGGTCAGGAGGCTCTGGATCTGCTCAATTGCATCGCTCAATCTCCATACGACCAAGACAAGTGCCTCCGCCTCATGAATTCATTGCGAGAATGCGTCCTCAATAAGAAGGTGAAGAAGTTTTCGCTAGCTGATCAGCAACAGAAGGATGCAAAGCCAGCTGACAAGAAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.53

Weight (kDa)

8.4

Isoelectric Point (pI)

53.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017127)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23760
fragaria_vesca FvH4_5g03940
malus_domestica MD06G1100800.v1.1
prunus_persica Prupe.5G114300_v2.0.a1
pyrus_communis pycom06g09600
rosa_chinensis RchiOBHm_Chr7g0195561
rosa_roxburghii Rroxscaffold_3G00260360
rosa_rugosa Rorug07G0024200
rosa_samantha Rh7AG151900 Rh7BG153600 Rh7CG157100 Rh7DG152900
rosa_wichuraiana Rw7G012970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 23, 97
AclWI GGATC 1 cut(s) 54
AcsI RAATTY 1 cut(s) 106
AluBI AGCT 4 cut(s) 11, 158, 188, 200
AluI AGCT 4 cut(s) 11, 158, 188, 200
AlwI GGATC 1 cut(s) 54
Ama87I CYCGRG 1 cut(s) 12
ApoI RAATTY 1 cut(s) 106
AsuHPI GGTGA 1 cut(s) 151
AsuNHI GCTAGC 1 cut(s) 154
AvaI CYCGRG 1 cut(s) 12
BclI TGATCA 1 cut(s) 160
BfaI CTAG 1 cut(s) 155
BmeT110I CYCGRG 1 cut(s) 12
BmsI GCATC 2 cut(s) 69, 166
BmtI GCTAGC 1 cut(s) 158
Bse3DI GCAATG 1 cut(s) 110
BseGI GGATG 1 cut(s) 181
BseMI GCAATG 1 cut(s) 110
BsiHKCI CYCGRG 1 cut(s) 12
BsmI GAATGC 1 cut(s) 125
BsoBI CYCGRG 1 cut(s) 12
Bsp143I GATC 2 cut(s) 46, 160
BspACI CCGC 2 cut(s) 23, 97
BspHI TCATGA 1 cut(s) 102
BspOI GCTAGC 1 cut(s) 158
BspPI GGATC 1 cut(s) 54
BsrDI GCAATG 1 cut(s) 110
BssMI GATC 2 cut(s) 46, 160
BstC8I GCNNGC 2 cut(s) 156, 186
BstF5I GGATG 1 cut(s) 181
BstKTI GATC 2 cut(s) 49, 163
BstMBI GATC 2 cut(s) 46, 160
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
BtgZI GCGATG 1 cut(s) 46
BtsCI GGATG 1 cut(s) 181
Cac8I GCNNGC 2 cut(s) 156, 186
CciI TCATGA 1 cut(s) 102
CseI GACGC 1 cut(s) 112
CviAII CATG 1 cut(s) 103
CviJI RGCY 6 cut(s) 11, 41, 158, 184, 188, 200
CviKI_1 RGCY 6 cut(s) 11, 41, 158, 184, 188, 200
DpnI GATC 2 cut(s) 48, 162
DpnII GATC 2 cut(s) 46, 160
EciI GGCGGA 1 cut(s) 86
Eco88I CYCGRG 1 cut(s) 12
EcoRI GAATTC 1 cut(s) 106
FaeI CATG 1 cut(s) 106
FaiI YATR 2 cut(s) 76, 104
FatI CATG 1 cut(s) 102
FbaI TGATCA 1 cut(s) 160
FokI GGATG 1 cut(s) 188
FspBI CTAG 1 cut(s) 155
HgaI GACGC 1 cut(s) 112
Hin1II CATG 1 cut(s) 106
HindIII AAGCTT 1 cut(s) 198
HphI GGTGA 1 cut(s) 151
Hpy188III TCNNGA 3 cut(s) 35, 44, 103
HpyAV CCTTC 2 cut(s) 130, 166
HpyCH4V TGCA 2 cut(s) 60, 179
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
Hsp92II CATG 1 cut(s) 106
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 2 cut(s) 46, 160
LpnPI CCDG 3 cut(s) 20, 29, 198
LweI GCATC 2 cut(s) 69, 166
MaeI CTAG 1 cut(s) 155
MalI GATC 2 cut(s) 48, 162
MboI GATC 2 cut(s) 46, 160
MboII GAAGA 1 cut(s) 154
MfeI CAATTG 1 cut(s) 55
MflI RGATCY 1 cut(s) 46
MluCI AATT 2 cut(s) 55, 106
MnlI CCTC 5 cut(s) 8, 31, 104, 110, 137
MspA1I CMGCKG 1 cut(s) 188
MunI CAATTG 1 cut(s) 55
Mva1269I GAATGC 1 cut(s) 125
MwoI GCNNNNNNNGC 1 cut(s) 185
NdeII GATC 2 cut(s) 46, 160
NheI GCTAGC 1 cut(s) 154
NlaIII CATG 1 cut(s) 106
PaeR7I CTCGAG 1 cut(s) 12
PagI TCATGA 1 cut(s) 102
PctI GAATGC 1 cut(s) 125
PspXI VCTCGAGB 1 cut(s) 12
PsuI RGATCY 1 cut(s) 46
PvuII CAGCTG 1 cut(s) 188
Sau3AI GATC 2 cut(s) 46, 160
SetI ASST 6 cut(s) 13, 19, 141, 160, 190, 202
SfaNI GCATC 2 cut(s) 69, 166
Sfr274I CTCGAG 1 cut(s) 12
SlaI CTCGAG 1 cut(s) 12
SmlI CTYRAG 1 cut(s) 12
SmoI CTYRAG 1 cut(s) 12
Sse9I AATT 2 cut(s) 55, 106
SsiI CCGC 2 cut(s) 23, 97
SspMI CTAG 1 cut(s) 155
TaqI TCGA 1 cut(s) 13
TasI AATT 2 cut(s) 55, 106
TspDTI ATGAA 2 cut(s) 99, 119
XapI RAATTY 1 cut(s) 106
XhoI CTCGAG 1 cut(s) 12
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.