Prupe.5G114300_v2.0.a1

Cox19-like CHCH family protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
11747916 .. 11750216
2301 bp
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UTR
Exon/CDS
Intron
Prupe.5G114300.1

Sequence Viewer

Length: 204 bp
ATGGAGGACGGTCGTGGTAAGGCGGTGTGCGGTCAGGAGGCTCTGGATCTGCTAAACTGCGTCACCCAATCTCCTTTCGATCAAGAAAAATGCGTCCGCCTCTTGAATTCCTTGCGGGAATGCGTGCTCAACAAGAAAGTGAAGAAGTTTTCACTAGCTGACCAGGAACAGAAGGATGCAAAGCCAATTGACAAGAAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.52

Weight (kDa)

8.4

Isoelectric Point (pI)

40.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017127)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23760
fragaria_vesca FvH4_5g03940
malus_domestica MD06G1100800.v1.1
prunus_persica Prupe.5G114300_v2.0.a1
pyrus_communis pycom06g09600
rosa_chinensis RchiOBHm_Chr7g0195561
rosa_roxburghii Rroxscaffold_3G00260360
rosa_rugosa Rorug07G0024200
rosa_samantha Rh7AG151900 Rh7BG153600 Rh7CG157100 Rh7DG152900
rosa_wichuraiana Rw7G012970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 23, 30, 97, 115
AclWI GGATC 1 cut(s) 54
AcsI RAATTY 1 cut(s) 106
AgsI TTSAA 1 cut(s) 106
AjnI CCWGG 1 cut(s) 162
AluBI AGCT 2 cut(s) 158, 200
AluI AGCT 2 cut(s) 158, 200
Alw21I GWGCWC 1 cut(s) 129
AlwI GGATC 1 cut(s) 54
ApoI RAATTY 1 cut(s) 106
AsuHPI GGTGA 1 cut(s) 55
Bbv12I GWGCWC 1 cut(s) 129
BciT130I CCWGG 1 cut(s) 164
BfaI CTAG 1 cut(s) 155
Bme1390I CCNGG 1 cut(s) 164
BmrFI CCNGG 1 cut(s) 164
BmsI GCATC 1 cut(s) 166
BsaXI ACNNNNNCTCC 2 cut(s) 55, 85
BseBI CCWGG 1 cut(s) 164
BseGI GGATG 1 cut(s) 181
Bsh1285I CGRYCG 1 cut(s) 13
BsiEI CGRYCG 1 cut(s) 13
BsiHKAI GWGCWC 1 cut(s) 129
BsmI GAATGC 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 2 cut(s) 46, 79
BspACI CCGC 4 cut(s) 23, 30, 97, 115
BspPI GGATC 1 cut(s) 54
BssMI GATC 2 cut(s) 46, 79
Bst2UI CCWGG 1 cut(s) 164
Bst4CI ACNGT 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 125
BstF5I GGATG 1 cut(s) 181
BstKTI GATC 2 cut(s) 49, 82
BstMBI GATC 2 cut(s) 46, 79
BstMCI CGRYCG 1 cut(s) 13
BstNI CCWGG 1 cut(s) 164
BstSCI CCNGG 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
BtsCI GGATG 1 cut(s) 181
Cac8I GCNNGC 1 cut(s) 125
CseI GACGC 2 cut(s) 49, 82
CviJI RGCY 4 cut(s) 41, 158, 184, 200
CviKI_1 RGCY 4 cut(s) 41, 158, 184, 200
DpnI GATC 2 cut(s) 48, 81
DpnII GATC 2 cut(s) 46, 79
EciI GGCGGA 1 cut(s) 86
EcoRI GAATTC 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 162
FauI CCCGC 1 cut(s) 108
FokI GGATG 1 cut(s) 188
FspBI CTAG 1 cut(s) 155
HgaI GACGC 2 cut(s) 49, 82
HindIII AAGCTT 1 cut(s) 198
HphI GGTGA 1 cut(s) 55
Hpy188III TCNNGA 4 cut(s) 35, 44, 83, 103
HpyAV CCTTC 1 cut(s) 166
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4V TGCA 1 cut(s) 179
Kzo9I GATC 2 cut(s) 46, 79
LpnPI CCDG 4 cut(s) 20, 29, 149, 176
LweI GCATC 1 cut(s) 166
MaeI CTAG 1 cut(s) 155
MaeIII GTNAC 1 cut(s) 61
MalI GATC 2 cut(s) 48, 81
MboI GATC 2 cut(s) 46, 79
MboII GAAGA 1 cut(s) 154
MfeI CAATTG 1 cut(s) 186
MflI RGATCY 1 cut(s) 46
MhlI GDGCHC 1 cut(s) 129
MluCI AATT 2 cut(s) 106, 186
MnlI CCTC 2 cut(s) 31, 110
MspR9I CCNGG 1 cut(s) 164
MunI CAATTG 1 cut(s) 186
Mva1269I GAATGC 1 cut(s) 125
MvaI CCWGG 1 cut(s) 164
NdeII GATC 2 cut(s) 46, 79
NmuCI GTSAC 1 cut(s) 61
PctI GAATGC 1 cut(s) 125
Psp6I CCWGG 1 cut(s) 162
PspGI CCWGG 1 cut(s) 162
PsuI RGATCY 1 cut(s) 46
Sau3AI GATC 2 cut(s) 46, 79
ScrFI CCNGG 1 cut(s) 164
SduI GDGCHC 1 cut(s) 129
SetI ASST 2 cut(s) 160, 202
SfaNI GCATC 1 cut(s) 166
Sse9I AATT 2 cut(s) 106, 186
SsiI CCGC 4 cut(s) 23, 30, 97, 115
SspMI CTAG 1 cut(s) 155
StyD4I CCNGG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 11
TaqI TCGA 1 cut(s) 78
TasI AATT 2 cut(s) 106, 186
TseFI GTSAC 1 cut(s) 61
Tsp45I GTSAC 1 cut(s) 61
XapI RAATTY 1 cut(s) 106
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.