Rorug07G0024200

Cox19-like CHCH family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0017127
Physical Location & Seq
Reverse (-)
1740263 .. 1741234
972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0024200.1

Sequence Viewer

Length: 798 bp
ATGGCGCCGAGAAACTTGCTCTGGTCCTGGGAAACGGAGCCCGATGCCGTGTTTGAGAATCTCCAATGGACACGGATGAAGGTCCAACTTAAGGATTCTGATCGCGCAGAGGCCATCGCTGCCATCCAAGATGTCCTCAAAAAATTCCAGGAAGATGATAAGCCACATGTACTCTTCTCAATCGCCTACGCCATTCAAAAGGAACTCTTTAAATCTAAGGAGATAGACGTGGAGATAATAAAAAAAGTTGCAGCGTTGTACCCACGCACCGGGGAGGATGACGACGACCACCACCACGATGACAACCGGCTGACGGCGGCGGCGGGTGATTTTAAACTGTCAGCGGATGCGGAGGAGGAGGAGGAGGGGGAGGATGAGGCTGATGATGCTGATGCTGCGGATGAGGAATGGGAGGAGTATGTAAGTGAGGATGAGGATGAGGCGGTGGCGGTGGCGGATGGCGGGGATGATGATCTTAAAAAGAGAGAAGCAGCCATGAAGGAGTTTGAAGAAGCAGGCATCAAGGAATTGAAGCGACGGTGCAATATTATGGGATGCAGTCTGAAACAAGGCCAAGAGCAGGAAATCCTCAGTGTGATGATTTCATTATTTAGCACACAAAGATTCAGAGTTGATGACGAATATCAGATGAAAAGGTGCATTGAATTTTTCATGTCACGTGTCAAAGGTTATATTTCTAGGTCTTGCACCCTCGACGACTTGGAGACGGTGCGCAAAGCCGCTGAAAGTGCGAAGAAGGAGAGGGAGGCTTATGCTGTCAACTTCATCAACTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

265

Amino Acids

30.51

Weight (kDa)

4.49

Isoelectric Point (pI)

43.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017127)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23760
fragaria_vesca FvH4_5g03940
malus_domestica MD06G1100800.v1.1
prunus_persica Prupe.5G114300_v2.0.a1
pyrus_communis pycom06g09600
rosa_chinensis RchiOBHm_Chr7g0195561
rosa_roxburghii Rroxscaffold_3G00260360
rosa_rugosa Rorug07G0024200
rosa_samantha Rh7AG151900 Rh7BG153600 Rh7CG157100 Rh7DG152900
rosa_wichuraiana Rw7G012970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 734
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 105
AcsI RAATTY 2 cut(s) 143, 665
AcvI CACGTG 1 cut(s) 680
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 171, 260
AfiI CCNNNNNNNGG 4 cut(s) 91, 269, 313, 580
AflII CTTAAG 1 cut(s) 89
AflIII ACRYGT 2 cut(s) 166, 679
AgsI TTSAA 4 cut(s) 197, 509, 532, 665
AjiI CACGTC 1 cut(s) 229
AjnI CCWGG 2 cut(s) 26, 147
Alw26I GTCTC 1 cut(s) 719
AoxI GGCC 2 cut(s) 111, 571
ApeKI GCWGC 4 cut(s) 119, 251, 395, 491
ApoI RAATTY 2 cut(s) 143, 665
AspLEI GCGC 3 cut(s) 7, 107, 735
AspS9I GGNCC 2 cut(s) 24, 82
AsuC2I CCSGG 1 cut(s) 271
AsuHPI GGTGA 1 cut(s) 338
AvaII GGWCC 2 cut(s) 24, 82
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 42
BbrPI CACGTG 1 cut(s) 680
BbvI GCAGC 4 cut(s) 106, 263, 382, 503
BccI CCATC 3 cut(s) 122, 131, 452
BceAI ACGGC 2 cut(s) 32, 330
BcgI CGANNNNNNTGC 1 cut(s) 32
BciT130I CCWGG 2 cut(s) 28, 149
BcnI CCSGG 1 cut(s) 271
BcoDI GTCTC 1 cut(s) 719
BfaI CTAG 1 cut(s) 699
BfoI RGCGCY 1 cut(s) 8
BfrI CTTAAG 1 cut(s) 89
BisI GCNGC 7 cut(s) 120, 252, 318, 321, 396, 492, 741
BlsI GCNGC 7 cut(s) 121, 253, 319, 322, 397, 493, 742
Bme1390I CCNGG 3 cut(s) 28, 149, 271
Bme18I GGWCC 2 cut(s) 24, 82
BmgBI CACGTC 1 cut(s) 229
BmgT120I GGNCC 2 cut(s) 24, 82
BmiI GGNNCC 2 cut(s) 6, 39
BmrFI CCNGG 3 cut(s) 28, 149, 271
BmsI GCATC 6 cut(s) 34, 337, 376, 382, 528, 545
BpuMI CCSGG 1 cut(s) 271
BsaAI YACGTR 1 cut(s) 680
BsaBI GATNNNNATC 2 cut(s) 99, 471
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 27, 270
Bsc4I CCNNNNNNNGG 4 cut(s) 91, 269, 313, 580
Bse118I RCCGGY 1 cut(s) 306
Bse1I ACTGG 1 cut(s) 797
Bse8I GATNNNNATC 2 cut(s) 99, 471
BseBI CCWGG 2 cut(s) 28, 149
BseDI CCNNGG 2 cut(s) 27, 270
BseJI GATNNNNATC 2 cut(s) 99, 471
BseLI CCNNNNNNNGG 4 cut(s) 91, 269, 313, 580
BseMII CTCAG 1 cut(s) 604
BseNI ACTGG 1 cut(s) 797
BseRI GAGGAG 5 cut(s) 368, 371, 374, 377, 428
BseXI GCAGC 4 cut(s) 106, 263, 382, 503
Bsh1236I CGCG 1 cut(s) 105
BshFI GGCC 2 cut(s) 113, 573
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 2 cut(s) 270, 307
BslI CCNNNNNNNGG 4 cut(s) 91, 269, 313, 580
BsmAI GTCTC 1 cut(s) 719
BsmBI CGTCTC 1 cut(s) 719
BsnI GGCC 2 cut(s) 113, 573
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 2 cut(s) 100, 472
BspANI GGCC 2 cut(s) 113, 573
BspCNI CTCAG 1 cut(s) 603
BspFNI CGCG 1 cut(s) 105
BspLI GGNNCC 2 cut(s) 6, 39
BspT107I GGYRCC 1 cut(s) 4
BspTI CTTAAG 1 cut(s) 89
BsrFI RCCGGY 1 cut(s) 306
BsrI ACTGG 1 cut(s) 797
BssAI RCCGGY 1 cut(s) 306
BssECI CCNNGG 2 cut(s) 27, 270
BssMI GATC 2 cut(s) 100, 472
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 2 cut(s) 28, 149
Bst4CI ACNGT 3 cut(s) 339, 540, 730
Bst6I CTCTTC 1 cut(s) 179
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 1 cut(s) 89
BstBAI YACGTR 1 cut(s) 680
BstC8I GCNNGC 1 cut(s) 517
BstDEI CTNAG 2 cut(s) 216, 590
BstFNI CGCG 1 cut(s) 105
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 3 cut(s) 7, 107, 735
BstKTI GATC 2 cut(s) 103, 475
BstMAI GTCTC 1 cut(s) 719
BstMBI GATC 2 cut(s) 100, 472
BstMWI GCNNNNNNNGC 4 cut(s) 119, 386, 395, 749
BstNI CCWGG 2 cut(s) 28, 149
BstNSI RCATGY 1 cut(s) 170
BstSCI CCNGG 3 cut(s) 26, 147, 269
BstUI CGCG 1 cut(s) 105
BstV1I GCAGC 4 cut(s) 106, 263, 382, 503
BsuRI GGCC 2 cut(s) 113, 573
BtgZI GCGATG 1 cut(s) 100
BtrI CACGTC 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 598
Cac8I GCNNGC 1 cut(s) 517
CfoI GCGC 3 cut(s) 7, 107, 735
Cfr10I RCCGGY 1 cut(s) 306
Cfr13I GGNCC 2 cut(s) 24, 82
Csp6I GTAC 2 cut(s) 170, 259
CviAII CATG 3 cut(s) 167, 496, 673
CviJI RGCY 9 cut(s) 40, 113, 163, 310, 380, 494, 573, 740, 770
CviKI_1 RGCY 9 cut(s) 40, 113, 163, 310, 380, 494, 573, 740, 770
CviQI GTAC 2 cut(s) 170, 259
DdeI CTNAG 2 cut(s) 216, 590
DinI GGCGCC 1 cut(s) 6
DpnI GATC 2 cut(s) 102, 474
DpnII GATC 2 cut(s) 100, 472
DraI TTTAAA 2 cut(s) 211, 334
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
EciI GGCGGA 1 cut(s) 470
Eco24I GRGCYC 1 cut(s) 42
Eco47I GGWCC 2 cut(s) 24, 82
Eco72I CACGTG 1 cut(s) 680
EcoRII CCWGG 2 cut(s) 26, 147
EcoT38I GRGCYC 1 cut(s) 42
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 719
FaeI CATG 3 cut(s) 170, 499, 676
FaiI YATR 7 cut(s) 168, 420, 497, 551, 674, 693, 774
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FatI CATG 3 cut(s) 166, 495, 672
FauI CCCGC 2 cut(s) 316, 455
Fnu4HI GCNGC 7 cut(s) 120, 252, 318, 321, 396, 492, 741
FriOI GRGCYC 1 cut(s) 42
Fsp4HI GCNGC 7 cut(s) 120, 252, 318, 321, 396, 492, 741
FspBI CTAG 1 cut(s) 699
FspI TGCGCA 1 cut(s) 734
GlaI GCGC 3 cut(s) 6, 106, 734
GluI GCNGC 7 cut(s) 120, 252, 318, 321, 396, 492, 741
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 113, 573
HapII CCGG 2 cut(s) 270, 307
HhaI GCGC 3 cut(s) 7, 107, 735
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 170, 499, 676
Hin6I GCGC 3 cut(s) 5, 105, 733
HinP1I GCGC 3 cut(s) 5, 105, 733
HincII GTYRAC 1 cut(s) 781
HindII GTYRAC 1 cut(s) 781
HinfI GANTC 3 cut(s) 58, 95, 624
HpaII CCGG 2 cut(s) 270, 307
HphI GGTGA 1 cut(s) 338
Hpy166II GTNNAC 1 cut(s) 781
Hpy188I TCNGA 4 cut(s) 100, 564, 629, 648
Hpy8I GTNNAC 1 cut(s) 781
Hpy99I CGWCG 3 cut(s) 287, 540, 719
HpyAV CCTTC 3 cut(s) 73, 493, 751
HpyCH4III ACNGT 3 cut(s) 339, 540, 730
HpyCH4IV ACGT 2 cut(s) 228, 679
HpyCH4V TGCA 5 cut(s) 251, 543, 558, 660, 708
HpyF10VI GCNNNNNNNGC 4 cut(s) 119, 386, 395, 749
HpyF3I CTNAG 2 cut(s) 216, 590
HpySE526I ACGT 2 cut(s) 228, 679
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 170, 499, 676
HspAI GCGC 3 cut(s) 5, 105, 733
KasI GGCGCC 1 cut(s) 4
Kzo9I GATC 2 cut(s) 100, 472
LmnI GCTCC 1 cut(s) 37
Lsp1109I GCAGC 4 cut(s) 106, 263, 382, 503
LweI GCATC 6 cut(s) 34, 337, 376, 382, 528, 545
MaeI CTAG 1 cut(s) 699
MaeII ACGT 2 cut(s) 228, 679
MaeIII GTNAC 1 cut(s) 675
MalI GATC 2 cut(s) 102, 474
MboI GATC 2 cut(s) 100, 472
MboII GAAGA 4 cut(s) 164, 166, 521, 766
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 3 cut(s) 143, 527, 665
Mly113I GGCGCC 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 109
MseI TTAA 4 cut(s) 90, 210, 333, 477
MslI CAYNNNNRTG 1 cut(s) 297
MspA1I CMGCKG 2 cut(s) 344, 743
MspCI CTTAAG 1 cut(s) 89
MspI CCGG 2 cut(s) 270, 307
MspR9I CCNGG 3 cut(s) 28, 149, 271
MvaI CCWGG 2 cut(s) 28, 149
MvnI CGCG 1 cut(s) 105
MwoI GCNNNNNNNGC 4 cut(s) 119, 386, 395, 749
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 1 cut(s) 271
NdeII GATC 2 cut(s) 100, 472
NlaIII CATG 3 cut(s) 170, 499, 676
NlaIV GGNNCC 2 cut(s) 6, 39
NmeAIII GCCGAG 1 cut(s) 33
NmuCI GTSAC 1 cut(s) 675
NsbI TGCGCA 1 cut(s) 734
NspI RCATGY 1 cut(s) 170
PciI ACATGT 1 cut(s) 166
PfeI GAWTC 3 cut(s) 58, 95, 624
PfoI TCCNGGA 1 cut(s) 147
PkrI GCNGC 7 cut(s) 121, 253, 319, 322, 397, 493, 742
PluTI GGCGCC 1 cut(s) 8
PmaCI CACGTG 1 cut(s) 680
PmlI CACGTG 1 cut(s) 680
Ppu21I YACGTR 1 cut(s) 680
PscI ACATGT 1 cut(s) 166
Psp6I CCWGG 2 cut(s) 26, 147
PspCI CACGTG 1 cut(s) 680
PspGI CCWGG 2 cut(s) 26, 147
PspN4I GGNNCC 2 cut(s) 6, 39
PspPI GGNCC 2 cut(s) 24, 82
RsaI GTAC 2 cut(s) 171, 260
RsaNI GTAC 2 cut(s) 170, 259
RseI CAYNNNNRTG 1 cut(s) 297
SaqAI TTAA 4 cut(s) 90, 210, 333, 477
SatI GCNGC 7 cut(s) 120, 252, 318, 321, 396, 492, 741
Sau3AI GATC 2 cut(s) 100, 472
Sau96I GGNCC 2 cut(s) 24, 82
ScrFI CCNGG 3 cut(s) 28, 149, 271
SduI GDGCHC 1 cut(s) 42
SetI ASST 6 cut(s) 84, 231, 659, 682, 691, 704
SfaNI GCATC 6 cut(s) 34, 337, 376, 382, 528, 545
SfoI GGCGCC 1 cut(s) 6
SinI GGWCC 2 cut(s) 24, 82
SmiMI CAYNNNNRTG 1 cut(s) 297
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 3 cut(s) 143, 527, 665
SspDI GGCGCC 1 cut(s) 4
SspI AATATT 1 cut(s) 547
SspMI CTAG 1 cut(s) 699
StyD4I CCNGG 3 cut(s) 26, 147, 269
TaaI ACNGT 3 cut(s) 339, 540, 730
TaiI ACGT 2 cut(s) 231, 682
TaqI TCGA 1 cut(s) 714
TasI AATT 3 cut(s) 143, 527, 665
TatI WGTACW 1 cut(s) 169
TauI GCSGC 3 cut(s) 320, 323, 743
TfiI GAWTC 3 cut(s) 58, 95, 624
Tru1I TTAA 4 cut(s) 90, 210, 333, 477
Tru9I TTAA 4 cut(s) 90, 210, 333, 477
TscAI CASTG 1 cut(s) 598
TseFI GTSAC 1 cut(s) 675
TseI GCWGC 4 cut(s) 119, 251, 395, 491
Tsp45I GTSAC 1 cut(s) 675
TspDTI ATGAA 6 cut(s) 92, 512, 594, 661, 665, 775
TspGWI ACGGA 2 cut(s) 50, 88
TspRI CASTG 1 cut(s) 598
Vha464I CTTAAG 1 cut(s) 89
VpaK11BI GGWCC 2 cut(s) 24, 82
XapI RAATTY 2 cut(s) 143, 665
XceI RCATGY 1 cut(s) 170
XspI CTAG 1 cut(s) 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.