AT4G24630

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0010663
Physical Location & Seq
Forward (+)
12714624 .. 12717390
2767 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G24630.1

Sequence Viewer

Length: 1224 bp
ATGACACAACGGGTATTCCAAGTCTGGAAAGGAAGCAATAAATTCATCCTGGGTGGGAGATTGATATTTGGACCAGATGCTAGGTCACTGCCTCTTACCTTGCTATTGATCATAGTTCCGGTTGTTTTGTTCTGTGTATTTGTAGCAAGGCACCTTCGCCATGAGTTCTCTCCCTACAATGCGGGATATGCTATCATGGTGGTAGCAATTCTTTTCACTATTTATGTATTGATCCTCCTCTTCTTCACATCTGCACGAGATCCTGGTATTGTTCCTCGAAATTCGCATCCACCAGAGGAAGACCTACGTTATGAGACAACTGTATCAGCTGATGGAAGACAAACACCGAGTGTTCAAATTCCCAGGACGAAAGAAGTCATTGTTAATGGCGTTTCTGTTAGAGTGAAATACTGTGATACATGCATGCTTTACAGGCCTCCTCGCTGCTCTCATTGCTCCATATGCAACAACTGTGTTGAGCGCTTTGATCATCATTGCCCATGGGTGGGACAATGCATTGGACTGAGAAACTATAGGTATTTCTTTATGTTTGTTTCTTCGTCAACACTTCTCTGCATCTATATTTTCTCGATGTCGGCGGTATACATCAAGATTCTGATGGATCATCAACAAGCAACTGTGTGGAGGGCAATGAAAGAATCACCTTGGGCTGTTGTGTTGATGATATATTGCTTTATTGCCCTGTGGTTTGTTGGAGGGCTCACAGCGTTTCACTTGTACCTCATAAGTACAAACCAGACAACCTATGAGAAACTCCGGTACAGGTCATCACACAGCAGGAGCATTGTCTATAACCGTGGCTGTCCAAACAATTTCCTGGAAGTTTTTTGCTCAAAGGTGAAGCCCTCGAGGAACAACTTTAGAGCCTTCATCGAAGAAGAACCCCCAAGAGTTATTACTCTGCCTAGCACCACCAGGGAATCAGGGGAAGCAGAAGACGAAAATGTGACCCGGCGACAGAAAGTGGAAGACGATCTAGACATTGGAGACGATCTAATGAATCTCTCACGGCGTTGTAATGCAGAAGATGCCAACAACAATCAGCCTCATCACACATTGGACATAGACCATGAGAGAGCAGGCTCGATAAGGACAGAAGCAAGACATGAAAGCTGGGGAAGAAGAAGTGGGAGCTGGGATGTAGCAGCAACAGATGTGAGGGAAAGTCGAAGCTACGCAACAGCAAAGGATGGAAGGGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko04391 map04391
Pfam Domains
Protein Families
DHHC

Protein Analysis

407

Amino Acids

46.75

Weight (kDa)

8.71

Isoelectric Point (pI)

41.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 136 - 260 1.4e-40 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010663)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24630 AT5G50020 AT5G50020 AT5G50020
fragaria_vesca FvH4_2g13200
malus_domestica MD10G1032800.v1.1
prunus_persica Prupe.8G038400_v2.0.a1 Prupe.8G038400_v2.0.a1 Prupe.8G038400_v2.0.a1
pyrus_communis pycom10g02090
rosa_chinensis RchiOBHm_Chr6g0274491
rosa_laevigata RLG00000013537
rosa_multiflora Rmu_sc0001289.1_g000020
rosa_roxburghii Rroxscaffold_7G00194180
rosa_rugosa Rorug06G0082200
rosa_samantha Rh6AG198500 Rh6BG201800 Rh6CG202600 Rh6DG193100
rosa_wichuraiana Rw6G017260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 868
AccB1I GGYRCC 1 cut(s) 150
AccI GTMKAC 1 cut(s) 603
AciI CCGC 2 cut(s) 182, 599
AclWI GGATC 3 cut(s) 226, 254, 630
AcsI RAATTY 3 cut(s) 41, 280, 357
AdeI CACNNNGTG 1 cut(s) 350
AfaI GTAC 3 cut(s) 740, 751, 782
AfeI AGCGCT 1 cut(s) 482
AfiI CCNNNNNNNGG 2 cut(s) 505, 506
AgsI TTSAA 1 cut(s) 356
AjnI CCWGG 5 cut(s) 48, 262, 362, 837, 935
AluBI AGCT 4 cut(s) 329, 1134, 1155, 1194
AluI AGCT 4 cut(s) 329, 1134, 1155, 1194
Alw26I GTCTC 2 cut(s) 308, 1002
AlwI GGATC 3 cut(s) 226, 254, 630
Ama87I CYCGRG 1 cut(s) 868
Aor51HI AGCGCT 1 cut(s) 482
AoxI GGCC 1 cut(s) 434
ApeKI GCWGC 2 cut(s) 444, 1166
ApoI RAATTY 3 cut(s) 41, 280, 357
AspLEI GCGC 1 cut(s) 483
AspS9I GGNCC 1 cut(s) 71
AsuC2I CCSGG 1 cut(s) 973
AsuHPI GGTGA 2 cut(s) 654, 871
AvaI CYCGRG 1 cut(s) 868
AvaII GGWCC 1 cut(s) 71
BaeI ACNNNNGTAYC 2 cut(s) 306, 339
BanI GGYRCC 1 cut(s) 150
BanII GRGCYC 1 cut(s) 723
BauI CACGAG 1 cut(s) 255
BbsI GAAGAC 4 cut(s) 306, 343, 963, 996
BbvI GCAGC 2 cut(s) 431, 1178
BccI CCATC 3 cut(s) 326, 613, 1205
BceAI ACGGC 1 cut(s) 1046
BciT130I CCWGG 5 cut(s) 50, 264, 364, 839, 937
BclI TGATCA 2 cut(s) 108, 487
BcnI CCSGG 1 cut(s) 973
BcoDI GTCTC 2 cut(s) 308, 1002
BfaI CTAG 3 cut(s) 81, 927, 998
BfmI CTRYAG 1 cut(s) 532
BfoI RGCGCY 1 cut(s) 484
BisI GCNGC 2 cut(s) 445, 1167
BlsI GCNGC 2 cut(s) 446, 1168
Bme1390I CCNGG 6 cut(s) 50, 264, 364, 839, 937, 973
Bme18I GGWCC 1 cut(s) 71
BmeT110I CYCGRG 1 cut(s) 868
BmgT120I GGNCC 1 cut(s) 71
BmiI GGNNCC 1 cut(s) 152
BmrFI CCNGG 6 cut(s) 50, 264, 364, 839, 937, 973
BmsI GCATC 4 cut(s) 67, 295, 585, 1039
BpiI GAAGAC 4 cut(s) 306, 343, 963, 996
BpuMI CCSGG 1 cut(s) 973
BsaJI CCNNGG 6 cut(s) 49, 362, 500, 665, 817, 936
BsaWI WCCGGW 2 cut(s) 118, 777
Bsc4I CCNNNNNNNGG 2 cut(s) 505, 506
Bse3DI GCAATG 3 cut(s) 451, 493, 657
BseBI CCWGG 5 cut(s) 50, 264, 364, 839, 937
BseDI CCNNGG 6 cut(s) 49, 362, 500, 665, 817, 936
BseGI GGATG 4 cut(s) 45, 286, 1165, 1216
BseLI CCNNNNNNNGG 2 cut(s) 505, 506
BseMI GCAATG 3 cut(s) 451, 493, 657
BseMII CTCAG 1 cut(s) 515
BseRI GAGGAG 2 cut(s) 227, 429
BseXI GCAGC 2 cut(s) 431, 1178
BseYI CCCAGC 2 cut(s) 1134, 1155
BsgI GTGCAG 1 cut(s) 237
BshFI GGCC 1 cut(s) 436
BshNI GGYRCC 1 cut(s) 150
BsiHKCI CYCGRG 1 cut(s) 868
BsiSI CCGG 3 cut(s) 119, 778, 973
BslFI GGGAC 1 cut(s) 522
BslI CCNNNNNNNGG 2 cut(s) 505, 506
BsmAI GTCTC 2 cut(s) 308, 1002
BsmBI CGTCTC 1 cut(s) 1002
BsmFI GGGAC 1 cut(s) 522
BsnI GGCC 1 cut(s) 436
BsoBI CYCGRG 1 cut(s) 868
Bsp1286I GDGCHC 1 cut(s) 723
Bsp143I GATC 7 cut(s) 108, 231, 259, 487, 622, 994, 1012
Bsp19I CCATGG 1 cut(s) 500
BspACI CCGC 2 cut(s) 182, 599
BspANI GGCC 1 cut(s) 436
BspCNI CTCAG 1 cut(s) 516
BspLI GGNNCC 1 cut(s) 152
BspPI GGATC 3 cut(s) 226, 254, 630
BspT107I GGYRCC 1 cut(s) 150
BsrDI GCAATG 3 cut(s) 451, 493, 657
BssECI CCNNGG 6 cut(s) 49, 362, 500, 665, 817, 936
BssMI GATC 7 cut(s) 108, 231, 259, 487, 622, 994, 1012
BssNAI GTATAC 1 cut(s) 604
BssSI CACGAG 1 cut(s) 255
BssT1I CCWWGG 2 cut(s) 500, 665
Bst1107I GTATAC 1 cut(s) 604
Bst2BI CACGAG 1 cut(s) 255
Bst2UI CCWGG 5 cut(s) 50, 264, 364, 839, 937
Bst4CI ACNGT 5 cut(s) 322, 413, 473, 640, 818
Bst6I CTCTTC 1 cut(s) 245
BstAPI GCANNNNNTGC 1 cut(s) 1049
BstC8I GCNNGC 2 cut(s) 425, 1102
BstDEI CTNAG 1 cut(s) 524
BstDSI CCRYGG 2 cut(s) 500, 817
BstF5I GGATG 4 cut(s) 45, 286, 1165, 1216
BstH2I RGCGCY 1 cut(s) 484
BstHHI GCGC 1 cut(s) 483
BstKTI GATC 7 cut(s) 111, 234, 262, 490, 625, 997, 1015
BstMAI GTCTC 2 cut(s) 308, 1002
BstMBI GATC 7 cut(s) 108, 231, 259, 487, 622, 994, 1012
BstMWI GCNNNNNNNGC 5 cut(s) 188, 433, 453, 462, 1049
BstNI CCWGG 5 cut(s) 50, 264, 364, 839, 937
BstNSI RCATGY 2 cut(s) 423, 427
BstSCI CCNGG 6 cut(s) 48, 262, 362, 837, 935, 971
BstSFI CTRYAG 1 cut(s) 532
BstV1I GCAGC 2 cut(s) 431, 1178
BstV2I GAAGAC 4 cut(s) 306, 343, 963, 996
BstX2I RGATCY 1 cut(s) 259
BstYI RGATCY 1 cut(s) 259
BstZ17I GTATAC 1 cut(s) 604
BsuRI GGCC 1 cut(s) 436
BtgI CCRYGG 2 cut(s) 500, 817
BtsCI GGATG 4 cut(s) 45, 286, 1165, 1216
BtsI GCAGTG 1 cut(s) 86
BtsIMutI CAGTG 1 cut(s) 86
Cac8I GCNNGC 2 cut(s) 425, 1102
CfoI GCGC 1 cut(s) 483
Cfr13I GGNCC 1 cut(s) 71
Csp6I GTAC 3 cut(s) 739, 750, 781
CviAII CATG 7 cut(s) 161, 196, 420, 424, 501, 1091, 1127
CviQI GTAC 3 cut(s) 739, 750, 781
DdeI CTNAG 1 cut(s) 524
DpnI GATC 7 cut(s) 110, 233, 261, 489, 624, 996, 1014
DpnII GATC 7 cut(s) 108, 231, 259, 487, 622, 994, 1012
DraIII CACNNNGTG 1 cut(s) 350
Eam1104I CTCTTC 1 cut(s) 245
EarI CTCTTC 1 cut(s) 245
Eco130I CCWWGG 2 cut(s) 500, 665
Eco147I AGGCCT 1 cut(s) 436
Eco24I GRGCYC 1 cut(s) 723
Eco47I GGWCC 1 cut(s) 71
Eco47III AGCGCT 1 cut(s) 482
Eco88I CYCGRG 1 cut(s) 868
EcoRII CCWGG 5 cut(s) 48, 262, 362, 837, 935
EcoT14I CCWWGG 2 cut(s) 500, 665
EcoT22I ATGCAT 2 cut(s) 425, 518
EcoT38I GRGCYC 1 cut(s) 723
ErhI CCWWGG 2 cut(s) 500, 665
Esp3I CGTCTC 1 cut(s) 1002
FaeI CATG 7 cut(s) 164, 199, 423, 427, 504, 1094, 1130
FaqI GGGAC 1 cut(s) 522
FatI CATG 7 cut(s) 160, 195, 419, 423, 500, 1090, 1126
FauI CCCGC 1 cut(s) 175
FauNDI CATATG 1 cut(s) 461
FbaI TGATCA 2 cut(s) 108, 487
FblI GTMKAC 1 cut(s) 603
Fnu4HI GCNGC 2 cut(s) 445, 1167
FokI GGATG 3 cut(s) 32, 273, 1172
FriOI GRGCYC 1 cut(s) 723
Fsp4HI GCNGC 2 cut(s) 445, 1167
FspBI CTAG 3 cut(s) 81, 927, 998
GlaI GCGC 1 cut(s) 482
GluI GCNGC 2 cut(s) 445, 1167
GsaI CCCAGC 2 cut(s) 1138, 1159
HaeII RGCGCY 1 cut(s) 484
HaeIII GGCC 1 cut(s) 436
HapII CCGG 3 cut(s) 119, 778, 973
HhaI GCGC 1 cut(s) 483
Hin1II CATG 7 cut(s) 164, 199, 423, 427, 504, 1094, 1130
Hin6I GCGC 1 cut(s) 481
HinP1I GCGC 1 cut(s) 481
HincII GTYRAC 1 cut(s) 564
HindII GTYRAC 1 cut(s) 564
HinfI GANTC 4 cut(s) 613, 659, 941, 1021
HpaII CCGG 3 cut(s) 119, 778, 973
HphI GGTGA 2 cut(s) 654, 871
Hpy166II GTNNAC 2 cut(s) 564, 604
Hpy188I TCNGA 1 cut(s) 618
Hpy188III TCNNGA 4 cut(s) 25, 589, 610, 998
Hpy8I GTNNAC 2 cut(s) 564, 604
HpyAV CCTTC 3 cut(s) 164, 898, 1209
HpyCH4III ACNGT 5 cut(s) 322, 413, 473, 640, 818
HpyCH4IV ACGT 1 cut(s) 307
HpyCH4V TGCA 6 cut(s) 254, 423, 465, 516, 576, 1043
HpyF10VI GCNNNNNNNGC 5 cut(s) 188, 433, 453, 462, 1049
HpyF3I CTNAG 1 cut(s) 524
HpySE526I ACGT 1 cut(s) 307
Hsp92II CATG 7 cut(s) 164, 199, 423, 427, 504, 1094, 1130
HspAI GCGC 1 cut(s) 481
Ksp22I TGATCA 2 cut(s) 108, 487
Kzo9I GATC 7 cut(s) 108, 231, 259, 487, 622, 994, 1012
LmnI GCTCC 3 cut(s) 461, 801, 1152
Lsp1109I GCAGC 2 cut(s) 431, 1178
LweI GCATC 4 cut(s) 67, 295, 585, 1039
MaeI CTAG 3 cut(s) 81, 927, 998
MaeII ACGT 1 cut(s) 307
MaeIII GTNAC 2 cut(s) 84, 967
MalI GATC 7 cut(s) 110, 233, 261, 489, 624, 996, 1014
MboI GATC 7 cut(s) 108, 231, 259, 487, 622, 994, 1012
MflI RGATCY 1 cut(s) 259
MhlI GDGCHC 1 cut(s) 723
MluCI AATT 5 cut(s) 41, 207, 280, 357, 832
MmeI TCCRAC 1 cut(s) 694
Mph1103I ATGCAT 2 cut(s) 425, 518
MseI TTAA 1 cut(s) 384
MspA1I CMGCKG 1 cut(s) 329
MspI CCGG 3 cut(s) 119, 778, 973
MspR9I CCNGG 6 cut(s) 50, 264, 364, 839, 937, 973
MvaI CCWGG 5 cut(s) 50, 264, 364, 839, 937
MwoI GCNNNNNNNGC 5 cut(s) 188, 433, 453, 462, 1049
NciI CCSGG 1 cut(s) 973
NcoI CCATGG 1 cut(s) 500
NdeI CATATG 1 cut(s) 461
NdeII GATC 7 cut(s) 108, 231, 259, 487, 622, 994, 1012
NlaIII CATG 7 cut(s) 164, 199, 423, 427, 504, 1094, 1130
NlaIV GGNNCC 1 cut(s) 152
NmuCI GTSAC 2 cut(s) 84, 967
NsiI ATGCAT 2 cut(s) 425, 518
NspI RCATGY 2 cut(s) 423, 427
PaeI GCATGC 1 cut(s) 427
PaeR7I CTCGAG 1 cut(s) 868
PceI AGGCCT 1 cut(s) 436
PfeI GAWTC 4 cut(s) 613, 659, 941, 1021
PfoI TCCNGGA 1 cut(s) 837
PkrI GCNGC 2 cut(s) 446, 1168
Psp6I CCWGG 5 cut(s) 48, 262, 362, 837, 935
PspFI CCCAGC 2 cut(s) 1134, 1155
PspGI CCWGG 5 cut(s) 48, 262, 362, 837, 935
PspN4I GGNNCC 1 cut(s) 152
PspPI GGNCC 1 cut(s) 71
PspXI VCTCGAGB 1 cut(s) 868
PsuI RGATCY 1 cut(s) 259
PvuII CAGCTG 1 cut(s) 329
RsaI GTAC 3 cut(s) 740, 751, 782
RsaNI GTAC 3 cut(s) 739, 750, 781
SaqAI TTAA 1 cut(s) 384
SatI GCNGC 2 cut(s) 445, 1167
Sau3AI GATC 7 cut(s) 108, 231, 259, 487, 622, 994, 1012
Sau96I GGNCC 1 cut(s) 71
ScrFI CCNGG 6 cut(s) 50, 264, 364, 839, 937, 973
SduI GDGCHC 1 cut(s) 723
SfaNI GCATC 4 cut(s) 67, 295, 585, 1039
SfcI CTRYAG 1 cut(s) 532
Sfr274I CTCGAG 1 cut(s) 868
SinI GGWCC 1 cut(s) 71
SlaI CTCGAG 1 cut(s) 868
SmlI CTYRAG 1 cut(s) 868
SmoI CTYRAG 1 cut(s) 868
SphI GCATGC 1 cut(s) 427
Sse9I AATT 5 cut(s) 41, 207, 280, 357, 832
SseBI AGGCCT 1 cut(s) 436
SsiI CCGC 2 cut(s) 182, 599
SspMI CTAG 3 cut(s) 81, 927, 998
StuI AGGCCT 1 cut(s) 436
StyD4I CCNGG 6 cut(s) 48, 262, 362, 837, 935, 971
StyI CCWWGG 2 cut(s) 500, 665
TaaI ACNGT 5 cut(s) 322, 413, 473, 640, 818
TaiI ACGT 1 cut(s) 310
TaqI TCGA 6 cut(s) 277, 590, 869, 894, 1106, 1189
TasI AATT 5 cut(s) 41, 207, 280, 357, 832
TatI WGTACW 1 cut(s) 749
TfiI GAWTC 4 cut(s) 613, 659, 941, 1021
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TscAI CASTG 1 cut(s) 93
TseFI GTSAC 2 cut(s) 84, 967
TseI GCWGC 2 cut(s) 444, 1166
Tsp45I GTSAC 2 cut(s) 84, 967
TspDTI ATGAA 5 cut(s) 34, 668, 880, 1034, 1143
TspRI CASTG 1 cut(s) 93
VpaK11BI GGWCC 1 cut(s) 71
XapI RAATTY 3 cut(s) 41, 280, 357
XbaI TCTAGA 1 cut(s) 997
XceI RCATGY 2 cut(s) 423, 427
XhoI CTCGAG 1 cut(s) 868
XmiI GTMKAC 1 cut(s) 603
XspI CTAG 3 cut(s) 81, 927, 998
Zsp2I ATGCAT 2 cut(s) 425, 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.