Prupe.8G038400_v2.0.a1

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0010663
Physical Location & Seq
Reverse (-)
3765480 .. 3772559
7080 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G038400.3

Sequence Viewer

Length: 1350 bp
ATGGCAAAGCGCGTGTACGAAGTGTGGAAAGGAAGTAATAAGTTCATCCTCGGTGGAAGGTTGATATTTGGGCCAGATGCCAAGTCACTGCTTGTCACATTATTGTTGATCATTGCTCCGGTTGTGATCTTTTGTGTATTTGTTGCATGGCATCTCCGGCATGAGTTTTCATCATATAATGCAGGATATGCAATACTAGTGGTAGCAATTGTATTTACTATCTATGTGTTGGTGCTTCTTTTTCTTACTTCAGCACGGGACCCTGGGATTATTCCACGAAATGCACATCCACCGGAGGAAGAATTTCGTTATGACCCGTCAGTTTCTATTGATGTTGGTGGAAGACAAGTGGCTGCTAATGCTGGTGGAAGACAGACTCCAAGCCTTCAATTCCCTAGAACAAAAGAAGTGATGGTCAATGGTCTTCCTGTGAGAGTGAAGTATTGTGACACTTGTATGCTATATCGTCCACCTCGTTGCTCCCATTGTTCTATTTGCAACAATTGTGTGGAACGCTTTGATCACCACTGCCCTTGGGTGGGCCAATGCATTGGACAGTGCAATTATCGTTACTTCTTTCTCTTCGTTTCTTCTGCAACTCTTCTCTGCATCTACGTATTCTCACTATCAGCTTTATACATCAAAATTCTGATGGACGATTATCACGGGACAGTTTGGAAGGCAATGAAAGAATCTCCTGCATCTGTGATACTAATGGCCTATTGTTTCATTTCTCTTTGGTTTGTTGGTGGACTAACTGGCTTCCATTTGTACCTTATAGGTACCAACCAGACTACATATGAAAACTTCAGGTACCGAGCTGACAACAGGATCAATGTTTACAACCGGGGTTGCTTAAATAACTTTCTTGAAGTATTTTGCACAGAATTAAAACCCTCAAGGAATAACTTTCGGGCTTTCGTTGAAGAGGAGTTACAAAGGCCTCCTCCTTTGCCCACTGCACGGGAAATAGAACCAGATGAATTGGGTGGGGATCCACGTTCAAAGGTTGAGGATGACTTAGATATTGGTGAAGATCTGTTGAAGATCTCGCAGCGTCGTAACATTGAAGAAATTGATGAGGACATACGCAGTAGAGGGAGCAACGGACCTCCTCATAATACCTCAGAGGTTGACTCTGCTTTGGGTTCAGATCACCGGGCTCCCACCATTCGATCTGATGCGCGTCACTCTAGTTGGGGAAGGAGAAGTGGGAGCTGGGAAATTGCACCGGAGGTCATTGGTAACACGAATGTCACTGAAGGTTGGGAAGGAAATGCCATTGACCAGAAACTCGCAATTATGTCAAGGGGGTTGAATGTATTCCCTTCAGGTGTAAAACATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko04391 map04391
Pfam Domains
Protein Families
DHHC

Protein Analysis

450

Amino Acids

50.73

Weight (kDa)

6.86

Isoelectric Point (pI)

45.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010663)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24630 AT5G50020 AT5G50020 AT5G50020
fragaria_vesca FvH4_2g13200
malus_domestica MD10G1032800.v1.1
prunus_persica Prupe.8G038400_v2.0.a1 Prupe.8G038400_v2.0.a1 Prupe.8G038400_v2.0.a1
pyrus_communis pycom10g02090
rosa_chinensis RchiOBHm_Chr6g0274491
rosa_laevigata RLG00000013537
rosa_multiflora Rmu_sc0001289.1_g000020
rosa_roxburghii Rroxscaffold_7G00194180
rosa_rugosa Rorug06G0082200
rosa_samantha Rh6AG198500 Rh6BG201800 Rh6CG202600 Rh6DG193100
rosa_wichuraiana Rw6G017260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 782, 813
AccB1I GGYRCC 2 cut(s) 782, 813
AccII CGCG 2 cut(s) 12, 1186
AclWI GGATC 3 cut(s) 839, 989, 1002
AcsI RAATTY 2 cut(s) 302, 645
AcuI CTGAAG 4 cut(s) 234, 793, 1281, 1314
AfaI GTAC 4 cut(s) 17, 773, 784, 815
AfiI CCNNNNNNNGG 3 cut(s) 538, 539, 963
AgsI TTSAA 7 cut(s) 389, 872, 926, 1005, 1045, 1070, 1318
AhlI ACTAGT 1 cut(s) 196
AjnI CCWGG 1 cut(s) 262
AluBI AGCT 3 cut(s) 632, 821, 1218
AluI AGCT 3 cut(s) 632, 821, 1218
AlwI GGATC 3 cut(s) 839, 989, 1002
AoxI GGCC 4 cut(s) 71, 541, 717, 941
ApeKI GCWGC 2 cut(s) 353, 1054
ApoI RAATTY 2 cut(s) 302, 645
Asp700I GAANNNNTTC 2 cut(s) 303, 1322
Asp718I GGTACC 2 cut(s) 782, 813
AspLEI GCGC 2 cut(s) 12, 1186
AspS9I GGNCC 4 cut(s) 71, 259, 541, 1109
AsuC2I CCSGG 2 cut(s) 848, 1160
AsuHPI GGTGA 3 cut(s) 515, 1043, 1148
AvaII GGWCC 2 cut(s) 259, 1109
BamHI GGATCC 1 cut(s) 994
BanI GGYRCC 2 cut(s) 782, 813
BanII GRGCYC 1 cut(s) 1165
BarI GAAGNNNNNNTAC 2 cut(s) 918, 950
BbsI GAAGAC 3 cut(s) 349, 376, 416
BbvI GCAGC 2 cut(s) 340, 1066
BccI CCATC 2 cut(s) 406, 646
BciT130I CCWGG 1 cut(s) 264
BclI TGATCA 2 cut(s) 108, 520
BcnI CCSGG 2 cut(s) 848, 1160
BcuI ACTAGT 1 cut(s) 196
BfaI CTAG 3 cut(s) 197, 396, 1194
BglII AGATCT 2 cut(s) 1036, 1047
BisI GCNGC 2 cut(s) 354, 1055
BlsI GCNGC 2 cut(s) 355, 1056
Bme1390I CCNGG 3 cut(s) 264, 848, 1160
Bme18I GGWCC 2 cut(s) 259, 1109
BmgT120I GGNCC 4 cut(s) 71, 259, 541, 1109
BmiI GGNNCC 6 cut(s) 260, 261, 784, 815, 996, 1164
BmrFI CCNGG 3 cut(s) 264, 848, 1160
BmsI GCATC 5 cut(s) 67, 160, 618, 710, 1171
BpiI GAAGAC 3 cut(s) 349, 376, 416
BplI GAGNNNNNCTC 2 cut(s) 1121, 1153
BpuEI CTTGAG 1 cut(s) 883
BpuMI CCSGG 2 cut(s) 848, 1160
BsaAI YACGTR 1 cut(s) 616
BsaJI CCNNGG 5 cut(s) 49, 262, 263, 533, 847
BsaWI WCCGGW 3 cut(s) 118, 292, 1231
Bsc4I CCNNNNNNNGG 3 cut(s) 538, 539, 963
Bse1I ACTGG 1 cut(s) 763
Bse3DI GCAATG 2 cut(s) 111, 690
BseBI CCWGG 1 cut(s) 264
BseDI CCNNGG 5 cut(s) 49, 262, 263, 533, 847
BseGI GGATG 3 cut(s) 45, 286, 1021
BseLI CCNNNNNNNGG 3 cut(s) 538, 539, 963
BseMI GCAATG 2 cut(s) 111, 690
BseMII CTCAG 1 cut(s) 1140
BseNI ACTGG 1 cut(s) 763
BseRI GAGGAG 3 cut(s) 936, 944, 1104
BseXI GCAGC 2 cut(s) 340, 1066
BseYI CCCAGC 1 cut(s) 1218
BsgI GTGCAG 1 cut(s) 945
Bsh1236I CGCG 2 cut(s) 12, 1186
BshFI GGCC 4 cut(s) 73, 543, 719, 943
BshNI GGYRCC 2 cut(s) 782, 813
BsiSI CCGG 6 cut(s) 119, 157, 293, 847, 1159, 1232
BslFI GGGAC 2 cut(s) 272, 682
BslI CCNNNNNNNGG 3 cut(s) 538, 539, 963
BsmFI GGGAC 2 cut(s) 272, 682
BsnI GGCC 4 cut(s) 73, 543, 719, 943
Bsp1286I GDGCHC 1 cut(s) 1165
Bsp143I GATC 9 cut(s) 108, 126, 520, 831, 994, 1036, 1047, 1153, 1175
BspANI GGCC 4 cut(s) 73, 543, 719, 943
BspCNI CTCAG 1 cut(s) 1139
BspFNI CGCG 2 cut(s) 12, 1186
BspLI GGNNCC 6 cut(s) 260, 261, 784, 815, 996, 1164
BspPI GGATC 3 cut(s) 839, 989, 1002
BspT107I GGYRCC 2 cut(s) 782, 813
BsrDI GCAATG 2 cut(s) 111, 690
BsrI ACTGG 1 cut(s) 763
BssECI CCNNGG 5 cut(s) 49, 262, 263, 533, 847
BssMI GATC 9 cut(s) 108, 126, 520, 831, 994, 1036, 1047, 1153, 1175
BssT1I CCWWGG 1 cut(s) 533
Bst2UI CCWGG 1 cut(s) 264
Bst4CI ACNGT 2 cut(s) 558, 673
Bst6I CTCTTC 3 cut(s) 587, 606, 921
BstAPI GCANNNNNTGC 1 cut(s) 188
BstBAI YACGTR 1 cut(s) 616
BstDEI CTNAG 2 cut(s) 1021, 1126
BstF5I GGATG 3 cut(s) 45, 286, 1021
BstFNI CGCG 2 cut(s) 12, 1186
BstHHI GCGC 2 cut(s) 12, 1186
BstKTI GATC 9 cut(s) 111, 129, 523, 834, 997, 1039, 1050, 1156, 1178
BstMBI GATC 9 cut(s) 108, 126, 520, 831, 994, 1036, 1047, 1153, 1175
BstMWI GCNNNNNNNGC 3 cut(s) 157, 188, 359
BstNI CCWGG 1 cut(s) 264
BstSCI CCNGG 3 cut(s) 262, 846, 1158
BstSNI TACGTA 1 cut(s) 616
BstUI CGCG 2 cut(s) 12, 1186
BstV1I GCAGC 2 cut(s) 340, 1066
BstV2I GAAGAC 3 cut(s) 349, 376, 416
BstX2I RGATCY 3 cut(s) 994, 1036, 1047
BstXI CCANNNNNNTGG 1 cut(s) 551
BstYI RGATCY 3 cut(s) 994, 1036, 1047
BsuRI GGCC 4 cut(s) 73, 543, 719, 943
BtsCI GGATG 3 cut(s) 45, 286, 1021
BtsI GCAGTG 3 cut(s) 86, 526, 957
BtsIMutI CAGTG 5 cut(s) 86, 526, 563, 957, 1257
CfoI GCGC 2 cut(s) 12, 1186
Cfr13I GGNCC 4 cut(s) 71, 259, 541, 1109
CseI GACGC 2 cut(s) 1046, 1175
Csp6I GTAC 4 cut(s) 16, 772, 783, 814
CspCI CAANNNNNGTGG 4 cut(s) 180, 215, 515, 550
CviAII CATG 2 cut(s) 147, 161
CviQI GTAC 4 cut(s) 16, 772, 783, 814
DdeI CTNAG 2 cut(s) 1021, 1126
DpnI GATC 9 cut(s) 110, 128, 522, 833, 996, 1038, 1049, 1155, 1177
DpnII GATC 9 cut(s) 108, 126, 520, 831, 994, 1036, 1047, 1153, 1175
Eam1104I CTCTTC 3 cut(s) 587, 606, 921
EarI CTCTTC 3 cut(s) 587, 606, 921
Eco105I TACGTA 1 cut(s) 616
Eco130I CCWWGG 1 cut(s) 533
Eco147I AGGCCT 1 cut(s) 943
Eco24I GRGCYC 1 cut(s) 1165
Eco47I GGWCC 2 cut(s) 259, 1109
Eco57I CTGAAG 4 cut(s) 234, 793, 1281, 1314
EcoO109I RGGNCCY 1 cut(s) 259
EcoRII CCWGG 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 533
EcoT22I ATGCAT 1 cut(s) 551
EcoT38I GRGCYC 1 cut(s) 1165
ErhI CCWWGG 1 cut(s) 533
FaeI CATG 2 cut(s) 150, 164
FaqI GGGAC 2 cut(s) 272, 682
FatI CATG 2 cut(s) 146, 160
FauNDI CATATG 1 cut(s) 799
FbaI TGATCA 2 cut(s) 108, 520
Fnu4HI GCNGC 2 cut(s) 354, 1055
FokI GGATG 3 cut(s) 32, 273, 1028
FriOI GRGCYC 1 cut(s) 1165
Fsp4HI GCNGC 2 cut(s) 354, 1055
FspBI CTAG 3 cut(s) 197, 396, 1194
GlaI GCGC 2 cut(s) 11, 1185
GluI GCNGC 2 cut(s) 354, 1055
GsaI CCCAGC 1 cut(s) 1222
HaeIII GGCC 4 cut(s) 73, 543, 719, 943
HapII CCGG 6 cut(s) 119, 157, 293, 847, 1159, 1232
HgaI GACGC 2 cut(s) 1046, 1175
HhaI GCGC 2 cut(s) 12, 1186
Hin1II CATG 2 cut(s) 150, 164
Hin6I GCGC 2 cut(s) 10, 1184
HinP1I GCGC 2 cut(s) 10, 1184
HincII GTYRAC 1 cut(s) 1135
HindII GTYRAC 1 cut(s) 1135
HinfI GANTC 3 cut(s) 376, 692, 1136
HpaII CCGG 6 cut(s) 119, 157, 293, 847, 1159, 1232
HphI GGTGA 3 cut(s) 515, 1043, 1148
Hpy166II GTNNAC 5 cut(s) 16, 470, 752, 841, 1135
Hpy188I TCNGA 4 cut(s) 651, 1129, 1153, 1180
Hpy188III TCNNGA 1 cut(s) 869
Hpy8I GTNNAC 5 cut(s) 16, 470, 752, 841, 1135
Hpy99I CGWCG 1 cut(s) 1062
HpyAV CCTTC 7 cut(s) 51, 395, 673, 1197, 1256, 1265, 1338
HpyCH4III ACNGT 2 cut(s) 558, 673
HpyCH4IV ACGT 2 cut(s) 615, 1000
HpyF10VI GCNNNNNNNGC 3 cut(s) 157, 188, 359
HpyF3I CTNAG 2 cut(s) 1021, 1126
HpySE526I ACGT 2 cut(s) 615, 1000
Hsp92II CATG 2 cut(s) 150, 164
HspAI GCGC 2 cut(s) 10, 1184
KflI GGGWCCC 1 cut(s) 259
KpnI GGTACC 2 cut(s) 786, 817
Ksp22I TGATCA 2 cut(s) 108, 520
Kzo9I GATC 9 cut(s) 108, 126, 520, 831, 994, 1036, 1047, 1153, 1175
LmnI GCTCC 5 cut(s) 121, 485, 1101, 1168, 1215
Lsp1109I GCAGC 2 cut(s) 340, 1066
LweI GCATC 5 cut(s) 67, 160, 618, 710, 1171
MaeI CTAG 3 cut(s) 197, 396, 1194
MaeII ACGT 2 cut(s) 615, 1000
MaeIII GTNAC 9 cut(s) 84, 94, 446, 569, 933, 1061, 1187, 1244, 1255
MalI GATC 9 cut(s) 110, 128, 522, 833, 996, 1038, 1049, 1155, 1177
MboI GATC 9 cut(s) 108, 126, 520, 831, 994, 1036, 1047, 1153, 1175
MfeI CAATTG 2 cut(s) 207, 502
MflI RGATCY 3 cut(s) 994, 1036, 1047
MhlI GDGCHC 1 cut(s) 1165
MlyI GAGTC 2 cut(s) 370, 1130
Mph1103I ATGCAT 1 cut(s) 551
MroXI GAANNNNTTC 2 cut(s) 303, 1322
MseI TTAA 2 cut(s) 857, 890
MslI CAYNNNNRTG 1 cut(s) 455
MspI CCGG 6 cut(s) 119, 157, 293, 847, 1159, 1232
MspR9I CCNGG 3 cut(s) 264, 848, 1160
MunI CAATTG 2 cut(s) 207, 502
MvaI CCWGG 1 cut(s) 264
MvnI CGCG 2 cut(s) 12, 1186
MwoI GCNNNNNNNGC 3 cut(s) 157, 188, 359
NciI CCSGG 2 cut(s) 848, 1160
NdeI CATATG 1 cut(s) 799
NdeII GATC 9 cut(s) 108, 126, 520, 831, 994, 1036, 1047, 1153, 1175
NlaIII CATG 2 cut(s) 150, 164
NlaIV GGNNCC 6 cut(s) 260, 261, 784, 815, 996, 1164
NmuCI GTSAC 5 cut(s) 84, 94, 446, 1187, 1255
NsiI ATGCAT 1 cut(s) 551
PasI CCCWGGG 1 cut(s) 263
PceI AGGCCT 1 cut(s) 943
PcsI WCGNNNNNNNCGW 1 cut(s) 472
PdmI GAANNNNTTC 2 cut(s) 303, 1322
PfeI GAWTC 1 cut(s) 692
PkrI GCNGC 2 cut(s) 355, 1056
PleI GAGTC 2 cut(s) 370, 1130
PpsI GAGTC 2 cut(s) 370, 1130
Ppu21I YACGTR 1 cut(s) 616
PpuMI RGGWCCY 1 cut(s) 259
Psp5II RGGWCCY 1 cut(s) 259
Psp6I CCWGG 1 cut(s) 262
PspFI CCCAGC 1 cut(s) 1218
PspGI CCWGG 1 cut(s) 262
PspN4I GGNNCC 6 cut(s) 260, 261, 784, 815, 996, 1164
PspPI GGNCC 4 cut(s) 71, 259, 541, 1109
PspPPI RGGWCCY 1 cut(s) 259
PsuI RGATCY 3 cut(s) 994, 1036, 1047
RsaI GTAC 4 cut(s) 17, 773, 784, 815
RsaNI GTAC 4 cut(s) 16, 772, 783, 814
RseI CAYNNNNRTG 1 cut(s) 455
SaqAI TTAA 2 cut(s) 857, 890
SatI GCNGC 2 cut(s) 354, 1055
Sau3AI GATC 9 cut(s) 108, 126, 520, 831, 994, 1036, 1047, 1153, 1175
Sau96I GGNCC 4 cut(s) 71, 259, 541, 1109
SchI GAGTC 2 cut(s) 370, 1130
ScrFI CCNGG 3 cut(s) 264, 848, 1160
SduI GDGCHC 1 cut(s) 1165
SfaNI GCATC 5 cut(s) 67, 160, 618, 710, 1171
SinI GGWCC 2 cut(s) 259, 1109
SmiMI CAYNNNNRTG 1 cut(s) 455
SmlI CTYRAG 1 cut(s) 898
SmoI CTYRAG 1 cut(s) 898
SnaBI TACGTA 1 cut(s) 616
SpeI ACTAGT 1 cut(s) 196
SseBI AGGCCT 1 cut(s) 943
SspMI CTAG 3 cut(s) 197, 396, 1194
StuI AGGCCT 1 cut(s) 943
StyD4I CCNGG 3 cut(s) 262, 846, 1158
StyI CCWWGG 1 cut(s) 533
TaaI ACNGT 2 cut(s) 558, 673
TaiI ACGT 2 cut(s) 618, 1003
TaqI TCGA 1 cut(s) 1174
TfiI GAWTC 1 cut(s) 692
Tru1I TTAA 2 cut(s) 857, 890
Tru9I TTAA 2 cut(s) 857, 890
TscAI CASTG 5 cut(s) 93, 533, 563, 964, 1264
TseFI GTSAC 5 cut(s) 84, 94, 446, 1187, 1255
TseI GCWGC 2 cut(s) 353, 1054
Tsp45I GTSAC 5 cut(s) 84, 94, 446, 1187, 1255
TspDTI ATGAA 6 cut(s) 34, 159, 701, 718, 816, 996
TspGWI ACGGA 1 cut(s) 1122
TspRI CASTG 5 cut(s) 93, 533, 563, 964, 1264
VpaK11BI GGWCC 2 cut(s) 259, 1109
XapI RAATTY 2 cut(s) 302, 645
XmnI GAANNNNTTC 2 cut(s) 303, 1322
XspI CTAG 3 cut(s) 197, 396, 1194
Zsp2I ATGCAT 1 cut(s) 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.