Rmu_sc0001289.1_g000020

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001289.1
OG0010663
Physical Location & Seq
Forward (+)
107869 .. 111203
3335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001289.1_g000020.1.cds

Sequence Viewer

Length: 1071 bp
atggtttcatcagcctttgaactgccccgggaccctgggattattccacgaaattcacatccacccgaggaagatttccggtatgactcttcagtgtccattgatgttgctggaagaccagggggtggtaatgtcggtggaagacaaactccaagccttcaattccctagaactaaagaagtgatggtcaatgggattcctgtaagagtgaagtattgtgacacttgtatgctatatcggcctcctcgttgttcccattgttctatctgcaacaattgtgtggagcgctttgatcaccactgcccttgggtggggcaatgcatcggccagtgcaactatcgttacttctttatgttcgtctcttccgcaactcttctctgcacatacgtgttctcaatatccgctctatacatcaagattttgatggatgatcataatgggacagtctggaaggcaatgaaagaatctcctgtgtctgtgatactaatggcctattgtttcatttctctttggtttgttggtggactaactggcttccatctgtaccttataggtaccaatcagactacatatgaaaacttcaggtacagagcggacaacaggatcaatgtttacaaccgtggttgtgtaaataactttcttgaagttttttgcacagaagtaaaaccctcacgaaataactttcgggctttcgttgaagaggaggtgcaaaggcctccccctttgcctaccgcacgggaagcggaaccagatgattcgggtggggatccacgttcaaaggtagaggatgatttggatattggtgaagatctgttgaagatctcacagcgtcgcaatattgaagagattgacgaggacatacgcagtagagggagcaatggaccgcataatgccttggaggcagactctgttctgggttcagatcaccgcgctcccaccattcgagctgatgctcgacactcgagttggggaaggaggagtgggagctgggaaattgcaccagacgtccttcctaatgaaaatgtcactgaaagtagaagtcatgtcaatccaaacgatgcatgtcaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko04391 map04391
Pfam Domains
Protein Families
DHHC

Protein Analysis

356

Amino Acids

40.21

Weight (kDa)

5.73

Isoelectric Point (pI)

45.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010663)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24630 AT5G50020 AT5G50020 AT5G50020
fragaria_vesca FvH4_2g13200
malus_domestica MD10G1032800.v1.1
prunus_persica Prupe.8G038400_v2.0.a1 Prupe.8G038400_v2.0.a1 Prupe.8G038400_v2.0.a1
pyrus_communis pycom10g02090
rosa_chinensis RchiOBHm_Chr6g0274491
rosa_laevigata RLG00000013537
rosa_multiflora Rmu_sc0001289.1_g000020
rosa_roxburghii Rroxscaffold_7G00194180
rosa_rugosa Rorug06G0082200
rosa_samantha Rh6AG198500 Rh6BG201800 Rh6CG202600 Rh6DG193100
rosa_wichuraiana Rw6G017260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1008
Acc65I GGTACC 1 cut(s) 554
AccB1I GGYRCC 1 cut(s) 554
AccB7I CCANNNNNTGG 1 cut(s) 125
AccBSI CCGCTC 2 cut(s) 404, 593
AccII CGCG 1 cut(s) 930
AciI CCGC 7 cut(s) 366, 402, 593, 732, 743, 884, 928
AclWI GGATC 3 cut(s) 611, 761, 774
AcoI YGGCCR 1 cut(s) 325
AcsI RAATTY 1 cut(s) 52
AcuI CTGAAG 2 cut(s) 75, 565
AcyI GRCGYC 1 cut(s) 1005
AfaI GTAC 3 cut(s) 545, 556, 587
AfeI AGCGCT 1 cut(s) 287
AfiI CCNNNNNNNGG 3 cut(s) 125, 310, 311
AflIII ACRYGT 1 cut(s) 387
AgsI TTSAA 7 cut(s) 20, 161, 644, 698, 777, 817, 842
AjnI CCWGG 2 cut(s) 34, 118
AleI CACNNNNGTG 1 cut(s) 386
AluBI AGCT 2 cut(s) 947, 987
AluI AGCT 2 cut(s) 947, 987
Alw26I GTCTC 1 cut(s) 364
AlwI GGATC 3 cut(s) 611, 761, 774
AlwNI CAGNNNCTG 1 cut(s) 908
Ama87I CYCGRG 3 cut(s) 27, 65, 961
Aor51HI AGCGCT 1 cut(s) 287
AoxI GGCC 4 cut(s) 239, 325, 489, 713
ApoI RAATTY 1 cut(s) 52
Asp718I GGTACC 1 cut(s) 554
AspLEI GCGC 2 cut(s) 288, 932
AspS9I GGNCC 2 cut(s) 31, 881
AsuC2I CCSGG 2 cut(s) 28, 29
AsuHPI GGTGA 3 cut(s) 287, 815, 917
AvaI CYCGRG 3 cut(s) 27, 65, 961
AvaII GGWCC 2 cut(s) 31, 881
BamHI GGATCC 1 cut(s) 766
BanI GGYRCC 1 cut(s) 554
BbsI GAAGAC 2 cut(s) 121, 148
BccI CCATC 3 cut(s) 178, 418, 546
BciT130I CCWGG 2 cut(s) 36, 120
BclI TGATCA 2 cut(s) 292, 430
BcnI CCSGG 2 cut(s) 28, 29
BcoDI GTCTC 1 cut(s) 364
BfaI CTAG 1 cut(s) 168
BfoI RGCGCY 1 cut(s) 289
BglI GCCNNNNNGGC 1 cut(s) 899
BglII AGATCT 2 cut(s) 808, 819
Bme1390I CCNGG 4 cut(s) 28, 29, 36, 120
Bme18I GGWCC 2 cut(s) 31, 881
BmeT110I CYCGRG 3 cut(s) 27, 65, 961
BmgT120I GGNCC 2 cut(s) 31, 881
BmiI GGNNCC 5 cut(s) 32, 33, 556, 747, 768
BmrFI CCNGG 4 cut(s) 28, 29, 36, 120
BmsI GCATC 3 cut(s) 330, 940, 1048
BpiI GAAGAC 2 cut(s) 121, 148
BplI GAGNNNNNCTC 2 cut(s) 890, 922
BpuMI CCSGG 2 cut(s) 28, 29
BsaAI YACGTR 1 cut(s) 388
BsaHI GRCGYC 1 cut(s) 1005
BsaJI CCNNGG 9 cut(s) 26, 27, 34, 35, 66, 119, 305, 619, 894
BsaWI WCCGGW 1 cut(s) 78
Bsc4I CCNNNNNNNGG 3 cut(s) 125, 310, 311
Bse1I ACTGG 2 cut(s) 328, 535
Bse3DI GCAATG 3 cut(s) 323, 462, 883
BseBI CCWGG 2 cut(s) 36, 120
BseDI CCNNGG 9 cut(s) 26, 27, 34, 35, 66, 119, 305, 619, 894
BseGI GGATG 3 cut(s) 58, 433, 793
BseLI CCNNNNNNNGG 3 cut(s) 125, 310, 311
BseMI GCAATG 3 cut(s) 323, 462, 883
BseNI ACTGG 2 cut(s) 328, 535
BseRI GAGGAG 3 cut(s) 234, 716, 991
BseYI CCCAGC 1 cut(s) 987
BsgI GTGCAG 1 cut(s) 364
Bsh1236I CGCG 1 cut(s) 930
BshFI GGCC 4 cut(s) 241, 327, 491, 715
BshNI GGYRCC 1 cut(s) 554
BsiHKCI CYCGRG 3 cut(s) 27, 65, 961
BsiSI CCGG 2 cut(s) 28, 79
BslFI GGGAC 2 cut(s) 44, 454
BslI CCNNNNNNNGG 3 cut(s) 125, 310, 311
BsmAI GTCTC 1 cut(s) 364
BsmBI CGTCTC 1 cut(s) 364
BsmFI GGGAC 2 cut(s) 44, 454
BsnI GGCC 4 cut(s) 241, 327, 491, 715
BsoBI CYCGRG 3 cut(s) 27, 65, 961
Bsp143I GATC 7 cut(s) 292, 430, 603, 766, 808, 819, 922
BspACI CCGC 7 cut(s) 366, 402, 593, 732, 743, 884, 928
BspANI GGCC 4 cut(s) 241, 327, 491, 715
BspFNI CGCG 1 cut(s) 930
BspLI GGNNCC 5 cut(s) 32, 33, 556, 747, 768
BspPI GGATC 3 cut(s) 611, 761, 774
BspT107I GGYRCC 1 cut(s) 554
BsrBI CCGCTC 2 cut(s) 404, 593
BsrDI GCAATG 3 cut(s) 323, 462, 883
BsrI ACTGG 2 cut(s) 328, 535
BssECI CCNNGG 9 cut(s) 26, 27, 34, 35, 66, 119, 305, 619, 894
BssMI GATC 7 cut(s) 292, 430, 603, 766, 808, 819, 922
BssNI GRCGYC 1 cut(s) 1005
BssT1I CCWWGG 2 cut(s) 305, 894
Bst2UI CCWGG 2 cut(s) 36, 120
Bst4CI ACNGT 2 cut(s) 445, 620
Bst6I CTCTTC 5 cut(s) 94, 367, 378, 693, 837
BstACI GRCGYC 1 cut(s) 1005
BstBAI YACGTR 1 cut(s) 388
BstDSI CCRYGG 1 cut(s) 619
BstF5I GGATG 3 cut(s) 58, 433, 793
BstFNI CGCG 1 cut(s) 930
BstH2I RGCGCY 1 cut(s) 289
BstHHI GCGC 2 cut(s) 288, 932
BstKTI GATC 7 cut(s) 295, 433, 606, 769, 811, 822, 925
BstMAI GTCTC 1 cut(s) 364
BstMBI GATC 7 cut(s) 292, 430, 603, 766, 808, 819, 922
BstMWI GCNNNNNNNGC 3 cut(s) 238, 740, 899
BstNI CCWGG 2 cut(s) 36, 120
BstNSI RCATGY 1 cut(s) 1065
BstSCI CCNGG 4 cut(s) 26, 27, 34, 118
BstUI CGCG 1 cut(s) 930
BstV2I GAAGAC 2 cut(s) 121, 148
BstX2I RGATCY 3 cut(s) 766, 808, 819
BstYI RGATCY 3 cut(s) 766, 808, 819
BsuRI GGCC 4 cut(s) 241, 327, 491, 715
BtgI CCRYGG 1 cut(s) 619
BtsCI GGATG 3 cut(s) 58, 433, 793
BtsI GCAGTG 1 cut(s) 298
BtsIMutI CAGTG 4 cut(s) 99, 298, 335, 1026
CaiI CAGNNNCTG 1 cut(s) 908
CfoI GCGC 2 cut(s) 288, 932
Cfr13I GGNCC 2 cut(s) 31, 881
Cfr9I CCCGGG 1 cut(s) 27
CseI GACGC 1 cut(s) 818
Csp6I GTAC 3 cut(s) 544, 555, 586
CspCI CAANNNNNGTGG 2 cut(s) 287, 322
CviAII CATG 2 cut(s) 1043, 1062
CviQI GTAC 3 cut(s) 544, 555, 586
DpnI GATC 7 cut(s) 294, 432, 605, 768, 810, 821, 924
DpnII GATC 7 cut(s) 292, 430, 603, 766, 808, 819, 922
EaeI YGGCCR 1 cut(s) 325
Eam1104I CTCTTC 5 cut(s) 94, 367, 378, 693, 837
EarI CTCTTC 5 cut(s) 94, 367, 378, 693, 837
Eco130I CCWWGG 2 cut(s) 305, 894
Eco147I AGGCCT 1 cut(s) 715
Eco47I GGWCC 2 cut(s) 31, 881
Eco47III AGCGCT 1 cut(s) 287
Eco57I CTGAAG 2 cut(s) 75, 565
Eco88I CYCGRG 3 cut(s) 27, 65, 961
EcoO109I RGGNCCY 1 cut(s) 31
EcoRII CCWGG 2 cut(s) 34, 118
EcoT14I CCWWGG 2 cut(s) 305, 894
EcoT22I ATGCAT 2 cut(s) 323, 1063
ErhI CCWWGG 2 cut(s) 305, 894
Esp3I CGTCTC 1 cut(s) 364
FaeI CATG 2 cut(s) 1046, 1065
FaqI GGGAC 2 cut(s) 44, 454
FatI CATG 2 cut(s) 1042, 1061
FauNDI CATATG 1 cut(s) 571
FbaI TGATCA 2 cut(s) 292, 430
FokI GGATG 3 cut(s) 45, 440, 800
FspBI CTAG 1 cut(s) 168
GlaI GCGC 2 cut(s) 287, 931
GsaI CCCAGC 1 cut(s) 991
HaeII RGCGCY 1 cut(s) 289
HaeIII GGCC 4 cut(s) 241, 327, 491, 715
HapII CCGG 2 cut(s) 28, 79
HgaI GACGC 1 cut(s) 818
HhaI GCGC 2 cut(s) 288, 932
Hin1I GRCGYC 1 cut(s) 1005
Hin1II CATG 2 cut(s) 1046, 1065
Hin6I GCGC 2 cut(s) 286, 930
HinP1I GCGC 2 cut(s) 286, 930
HinfI GANTC 5 cut(s) 86, 196, 464, 755, 905
HpaII CCGG 2 cut(s) 28, 79
HphI GGTGA 3 cut(s) 287, 815, 917
Hpy166II GTNNAC 2 cut(s) 524, 613
Hpy188I TCNGA 2 cut(s) 564, 922
Hpy188III TCNNGA 4 cut(s) 415, 448, 641, 672
Hpy8I GTNNAC 2 cut(s) 524, 613
Hpy99I CGWCG 1 cut(s) 834
HpyAV CCTTC 4 cut(s) 167, 445, 966, 1019
HpyCH4III ACNGT 2 cut(s) 445, 620
HpyCH4IV ACGT 3 cut(s) 387, 772, 1005
HpyCH4V TGCA 8 cut(s) 270, 321, 333, 381, 654, 709, 998, 1061
HpyF10VI GCNNNNNNNGC 3 cut(s) 238, 740, 899
HpySE526I ACGT 3 cut(s) 387, 772, 1005
Hsp92I GRCGYC 1 cut(s) 1005
Hsp92II CATG 2 cut(s) 1046, 1065
HspAI GCGC 2 cut(s) 286, 930
KflI GGGWCCC 1 cut(s) 31
KpnI GGTACC 1 cut(s) 558
Ksp22I TGATCA 2 cut(s) 292, 430
Kzo9I GATC 7 cut(s) 292, 430, 603, 766, 808, 819, 922
LmnI GCTCC 4 cut(s) 283, 873, 937, 984
LweI GCATC 3 cut(s) 330, 940, 1048
MaeI CTAG 1 cut(s) 168
MaeII ACGT 3 cut(s) 387, 772, 1005
MaeIII GTNAC 3 cut(s) 218, 341, 1024
MalI GATC 7 cut(s) 294, 432, 605, 768, 810, 821, 924
MbiI CCGCTC 2 cut(s) 404, 593
MboI GATC 7 cut(s) 292, 430, 603, 766, 808, 819, 922
MfeI CAATTG 1 cut(s) 274
MflI RGATCY 3 cut(s) 766, 808, 819
MluCI AATT 4 cut(s) 52, 161, 274, 993
MlyI GAGTC 2 cut(s) 80, 899
Mph1103I ATGCAT 2 cut(s) 323, 1063
MslI CAYNNNNRTG 3 cut(s) 227, 386, 1066
MspI CCGG 2 cut(s) 28, 79
MspR9I CCNGG 4 cut(s) 28, 29, 36, 120
MunI CAATTG 1 cut(s) 274
MvaI CCWGG 2 cut(s) 36, 120
MvnI CGCG 1 cut(s) 930
MwoI GCNNNNNNNGC 3 cut(s) 238, 740, 899
NciI CCSGG 2 cut(s) 28, 29
NdeI CATATG 1 cut(s) 571
NdeII GATC 7 cut(s) 292, 430, 603, 766, 808, 819, 922
NlaIII CATG 2 cut(s) 1046, 1065
NlaIV GGNNCC 5 cut(s) 32, 33, 556, 747, 768
NmuCI GTSAC 2 cut(s) 218, 1024
NsiI ATGCAT 2 cut(s) 323, 1063
NspI RCATGY 1 cut(s) 1065
OliI CACNNNNGTG 1 cut(s) 386
PaeR7I CTCGAG 1 cut(s) 961
PasI CCCWGGG 1 cut(s) 35
PceI AGGCCT 1 cut(s) 715
PcsI WCGNNNNNNNCGW 1 cut(s) 244
PfeI GAWTC 3 cut(s) 196, 464, 755
PflMI CCANNNNNTGG 1 cut(s) 125
PleI GAGTC 2 cut(s) 80, 899
PpsI GAGTC 2 cut(s) 80, 899
Ppu21I YACGTR 1 cut(s) 388
PpuMI RGGWCCY 1 cut(s) 31
Psp5II RGGWCCY 1 cut(s) 31
Psp6I CCWGG 2 cut(s) 34, 118
PspFI CCCAGC 1 cut(s) 987
PspGI CCWGG 2 cut(s) 34, 118
PspN4I GGNNCC 5 cut(s) 32, 33, 556, 747, 768
PspPI GGNCC 2 cut(s) 31, 881
PspPPI RGGWCCY 1 cut(s) 31
PspXI VCTCGAGB 1 cut(s) 961
PstNI CAGNNNCTG 1 cut(s) 908
PsuI RGATCY 3 cut(s) 766, 808, 819
RsaI GTAC 3 cut(s) 545, 556, 587
RsaNI GTAC 3 cut(s) 544, 555, 586
RseI CAYNNNNRTG 3 cut(s) 227, 386, 1066
Sau3AI GATC 7 cut(s) 292, 430, 603, 766, 808, 819, 922
Sau96I GGNCC 2 cut(s) 31, 881
SchI GAGTC 2 cut(s) 80, 899
ScrFI CCNGG 4 cut(s) 28, 29, 36, 120
SfaNI GCATC 3 cut(s) 330, 940, 1048
Sfr274I CTCGAG 1 cut(s) 961
SinI GGWCC 2 cut(s) 31, 881
SlaI CTCGAG 1 cut(s) 961
SmaI CCCGGG 1 cut(s) 29
SmiMI CAYNNNNRTG 3 cut(s) 227, 386, 1066
SmlI CTYRAG 1 cut(s) 961
SmoI CTYRAG 1 cut(s) 961
Sse9I AATT 4 cut(s) 52, 161, 274, 993
SseBI AGGCCT 1 cut(s) 715
SsiI CCGC 7 cut(s) 366, 402, 593, 732, 743, 884, 928
SspI AATATT 1 cut(s) 838
SspMI CTAG 1 cut(s) 168
StuI AGGCCT 1 cut(s) 715
StyD4I CCNGG 4 cut(s) 26, 27, 34, 118
StyI CCWWGG 2 cut(s) 305, 894
TaaI ACNGT 2 cut(s) 445, 620
TaiI ACGT 3 cut(s) 390, 775, 1008
TaqI TCGA 3 cut(s) 943, 955, 962
TasI AATT 4 cut(s) 52, 161, 274, 993
TfiI GAWTC 3 cut(s) 196, 464, 755
TscAI CASTG 4 cut(s) 99, 305, 335, 1033
TseFI GTSAC 2 cut(s) 218, 1024
Tsp45I GTSAC 2 cut(s) 218, 1024
TspDTI ATGAA 4 cut(s) 473, 490, 588, 1032
TspMI CCCGGG 1 cut(s) 27
TspRI CASTG 4 cut(s) 99, 305, 335, 1033
Van91I CCANNNNNTGG 1 cut(s) 125
VpaK11BI GGWCC 2 cut(s) 31, 881
XapI RAATTY 1 cut(s) 52
XceI RCATGY 1 cut(s) 1065
XhoI CTCGAG 1 cut(s) 961
XmaI CCCGGG 1 cut(s) 27
XspI CTAG 1 cut(s) 168
ZraI GACGTC 1 cut(s) 1006
Zsp2I ATGCAT 2 cut(s) 323, 1063
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.