FvH4_2g13200

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0010663
Physical Location & Seq
Forward (+)
11547188 .. 11554613
7426 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g13200.t1

Sequence Viewer

Length: 1296 bp
ATGGCAAAGCGCGTCTACCAAGTCTGGAAAGGAAGTAATAAGTTCATTCTTGGTGGAAGATTGATATTTGGGCCTGATGCCAGGTCACTGCTTGTCACATTGCTGTTGATCATTGCTCCAGTTATCGTCTTTTGCGTGTTTGTCGCGTGGCACCTTCGTCATGAATTTCCATCGTATAATGCAGGATACACCATTCTGGTGGTGGCGATTGTATTTACTATATATGTGTTGGTGCTTCTTTTTCTTACTTCAGCACGGGACCCTGGTATTATTCCACGAAACTCACATCCACCTGAGGAAGAGTTCCGATATGATTCTTCAGTGTCTGTTGATGTTAGTGGAAGACCAGGGAGTGGTAATGTTGGTGGAAGACAAACTCCAAGCCTTCAATTCCCAAGAACAAAAGAAGTGATGGTCAATGGGCTTCCTGTAAGAGTGAAGTATTGTGACACTTGTATGCTATATCGCCCTCCTCGTTGTTCTCATTGTTCCATCTGCAACAATTGCGTGGAGCGCTTTGATCACCACTGCCCTTGGGTGGGGCAATGCATTGGCCAGTGCAACTATCGGTACTTCTTTATGTTCGTCTCTTCGGCAACTCTTCTCTGCATTTACGTGTTCTCAATATCCGCTTTGTACATTAAGATTTTGATGGATGATCATCGAGGGACGGTTTGGAAGGCAATGAAAGAATCTCCTGTGTCAGTGATACTAATGGCCTATTGTTTCATTTCTCTTTGGTTTGTTGGTGGACTAACTGGCTTCCATATGTACCTTATAGGTACCAATCAGACTACATATGAGAACTTCAGGTACAGAGCGGACAACAGGATAAATGTTTACAACCGTGGCTGTGTAAATAACTTTCTAGAAGTATTTTGCTCAGAAGTAAAACCCTCACGGAATAACTTTCGCGCTTTTGTTGAAGAGGAAGTGCAAAGGCCTCCCCCTTTGCCCACTGCACGGGAAGCAGAACCTGATGATTCGGGTGGGGATCCACGGTCAAAGGTAGAGGACGATTTGGATATTGGTGAAGATCTGTTGAAGATCTCACAGCGTCGTAATATTGAAGAGATTGACGAAGACATACGCAGTAGAGGGAGCAATGGACCGCATAATGCCTCAGAGGCAGACTCTGTTCTTGGTTCAGATCACCGCGCTCCAATCATTCGAGCTGATGCCCGACACTCGAGTTGGGGAAGGAGTGGGAGCTGGGAAATTGCACCAGATGTCCTTGCCAACGAAAATGTCACTGAAAGTAGAAGTCATGTCACTGCGCAGGATGCATGTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko04391 map04391
Pfam Domains
Protein Families
DHHC

Protein Analysis

432

Amino Acids

48.7

Weight (kDa)

6.64

Isoelectric Point (pI)

42.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 147 - 271 3.6e-38 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010663)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24630 AT5G50020 AT5G50020 AT5G50020
fragaria_vesca FvH4_2g13200
malus_domestica MD10G1032800.v1.1
prunus_persica Prupe.8G038400_v2.0.a1 Prupe.8G038400_v2.0.a1 Prupe.8G038400_v2.0.a1
pyrus_communis pycom10g02090
rosa_chinensis RchiOBHm_Chr6g0274491
rosa_laevigata RLG00000013537
rosa_multiflora Rmu_sc0001289.1_g000020
rosa_roxburghii Rroxscaffold_7G00194180
rosa_rugosa Rorug06G0082200
rosa_samantha Rh6AG198500 Rh6BG201800 Rh6CG202600 Rh6DG193100
rosa_wichuraiana Rw6G017260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1278
Acc65I GGTACC 1 cut(s) 782
AccB1I GGYRCC 2 cut(s) 150, 782
AccB7I CCANNNNNTGG 1 cut(s) 353
AccBSI CCGCTC 1 cut(s) 821
AccI GTMKAC 1 cut(s) 15
AccII CGCG 4 cut(s) 12, 146, 915, 1158
AciI CCGC 4 cut(s) 630, 821, 1112, 1156
AclWI GGATC 2 cut(s) 989, 1002
AcoI YGGCCR 1 cut(s) 553
AcsI RAATTY 1 cut(s) 164
AcuI CTGAAG 3 cut(s) 234, 303, 793
AfaI GTAC 5 cut(s) 572, 638, 773, 784, 815
AfeI AGCGCT 1 cut(s) 515
AfiI CCNNNNNNNGG 4 cut(s) 353, 538, 539, 963
AflIII ACRYGT 1 cut(s) 615
AgsI TTSAA 4 cut(s) 389, 926, 1045, 1070
AjnI CCWGG 3 cut(s) 80, 262, 346
AluBI AGCT 2 cut(s) 1175, 1212
AluI AGCT 2 cut(s) 1175, 1212
Alw26I GTCTC 1 cut(s) 592
AlwI GGATC 2 cut(s) 989, 1002
AlwNI CAGNNNCTG 3 cut(s) 326, 977, 1136
Ama87I CYCGRG 1 cut(s) 1189
Aor51HI AGCGCT 1 cut(s) 515
AoxI GGCC 4 cut(s) 71, 553, 717, 941
ApoI RAATTY 1 cut(s) 164
Asp718I GGTACC 1 cut(s) 782
AspLEI GCGC 5 cut(s) 12, 516, 917, 1160, 1279
AspS9I GGNCC 3 cut(s) 71, 259, 1109
AsuHPI GGTGA 3 cut(s) 515, 1043, 1145
AvaI CYCGRG 1 cut(s) 1189
AvaII GGWCC 2 cut(s) 259, 1109
AxyI CCTNAGG 1 cut(s) 294
BalI TGGCCA 1 cut(s) 555
BamHI GGATCC 1 cut(s) 994
BanI GGYRCC 2 cut(s) 150, 782
BbsI GAAGAC 3 cut(s) 349, 376, 1089
BccI CCATC 4 cut(s) 178, 406, 500, 646
BciT130I CCWGG 3 cut(s) 82, 264, 348
BciVI GTATCC 1 cut(s) 179
BclI TGATCA 3 cut(s) 108, 520, 658
BcoDI GTCTC 1 cut(s) 592
BfaI CTAG 1 cut(s) 869
BfoI RGCGCY 1 cut(s) 517
BfuI GTATCC 1 cut(s) 179
BglI GCCNNNNNGGC 1 cut(s) 1127
BglII AGATCT 2 cut(s) 1036, 1047
Bme1390I CCNGG 3 cut(s) 82, 264, 348
Bme18I GGWCC 2 cut(s) 259, 1109
BmeT110I CYCGRG 1 cut(s) 1189
BmgT120I GGNCC 3 cut(s) 71, 259, 1109
BmiI GGNNCC 5 cut(s) 152, 260, 261, 784, 996
BmrFI CCNGG 3 cut(s) 82, 264, 348
BmsI GCATC 3 cut(s) 67, 1168, 1273
BpiI GAAGAC 3 cut(s) 349, 376, 1089
BplI GAGNNNNNCTC 2 cut(s) 1118, 1150
BpmI CTGGAG 1 cut(s) 102
BsaAI YACGTR 1 cut(s) 616
BsaBI GATNNNNATC 1 cut(s) 660
BsaJI CCNNGG 5 cut(s) 262, 347, 533, 847, 998
Bsc4I CCNNNNNNNGG 4 cut(s) 353, 538, 539, 963
Bse1I ACTGG 3 cut(s) 119, 556, 763
Bse21I CCTNAGG 1 cut(s) 294
Bse3DI GCAATG 5 cut(s) 98, 111, 551, 690, 1111
Bse8I GATNNNNATC 1 cut(s) 660
BseBI CCWGG 3 cut(s) 82, 264, 348
BseDI CCNNGG 5 cut(s) 262, 347, 533, 847, 998
BseGI GGATG 3 cut(s) 286, 661, 1288
BseJI GATNNNNATC 1 cut(s) 660
BseLI CCNNNNNNNGG 4 cut(s) 353, 538, 539, 963
BseMI GCAATG 5 cut(s) 98, 111, 551, 690, 1111
BseMII CTCAG 3 cut(s) 285, 897, 1137
BseNI ACTGG 3 cut(s) 119, 556, 763
BseRI GAGGAG 1 cut(s) 462
BseYI CCCAGC 1 cut(s) 1212
BsgI GTGCAG 1 cut(s) 945
Bsh1236I CGCG 4 cut(s) 12, 146, 915, 1158
BshFI GGCC 4 cut(s) 73, 555, 719, 943
BshNI GGYRCC 2 cut(s) 150, 782
BsiHKCI CYCGRG 1 cut(s) 1189
BslFI GGGAC 2 cut(s) 272, 682
BslI CCNNNNNNNGG 4 cut(s) 353, 538, 539, 963
BsmAI GTCTC 1 cut(s) 592
BsmBI CGTCTC 1 cut(s) 592
BsmFI GGGAC 2 cut(s) 272, 682
BsnI GGCC 4 cut(s) 73, 555, 719, 943
BsoBI CYCGRG 1 cut(s) 1189
Bsp1407I TGTACA 1 cut(s) 636
Bsp143I GATC 7 cut(s) 108, 520, 658, 994, 1036, 1047, 1150
BspACI CCGC 4 cut(s) 630, 821, 1112, 1156
BspANI GGCC 4 cut(s) 73, 555, 719, 943
BspCNI CTCAG 3 cut(s) 286, 896, 1136
BspFNI CGCG 4 cut(s) 12, 146, 915, 1158
BspHI TCATGA 1 cut(s) 160
BspLI GGNNCC 5 cut(s) 152, 260, 261, 784, 996
BspPI GGATC 2 cut(s) 989, 1002
BspT107I GGYRCC 2 cut(s) 150, 782
BsrBI CCGCTC 1 cut(s) 821
BsrDI GCAATG 5 cut(s) 98, 111, 551, 690, 1111
BsrGI TGTACA 1 cut(s) 636
BsrI ACTGG 3 cut(s) 119, 556, 763
BssECI CCNNGG 5 cut(s) 262, 347, 533, 847, 998
BssMI GATC 7 cut(s) 108, 520, 658, 994, 1036, 1047, 1150
BssT1I CCWWGG 1 cut(s) 533
Bst2UI CCWGG 3 cut(s) 82, 264, 348
Bst4CI ACNGT 3 cut(s) 673, 848, 1002
Bst6I CTCTTC 5 cut(s) 294, 595, 606, 921, 1065
BstAPI GCANNNNNTGC 1 cut(s) 504
BstAUI TGTACA 1 cut(s) 636
BstBAI YACGTR 1 cut(s) 616
BstDEI CTNAG 3 cut(s) 294, 883, 1123
BstDSI CCRYGG 2 cut(s) 847, 998
BstF5I GGATG 3 cut(s) 286, 661, 1288
BstFNI CGCG 4 cut(s) 12, 146, 915, 1158
BstH2I RGCGCY 1 cut(s) 517
BstHHI GCGC 5 cut(s) 12, 516, 917, 1160, 1279
BstKTI GATC 7 cut(s) 111, 523, 661, 997, 1039, 1050, 1153
BstMAI GTCTC 1 cut(s) 592
BstMBI GATC 7 cut(s) 108, 520, 658, 994, 1036, 1047, 1150
BstMWI GCNNNNNNNGC 5 cut(s) 504, 513, 968, 1127, 1283
BstNI CCWGG 3 cut(s) 82, 264, 348
BstNSI RCATGY 1 cut(s) 1290
BstSCI CCNGG 3 cut(s) 80, 262, 346
BstUI CGCG 4 cut(s) 12, 146, 915, 1158
BstV2I GAAGAC 3 cut(s) 349, 376, 1089
BstX2I RGATCY 3 cut(s) 994, 1036, 1047
BstXI CCANNNNNNTGG 1 cut(s) 199
BstYI RGATCY 3 cut(s) 994, 1036, 1047
Bsu36I CCTNAGG 1 cut(s) 294
BsuI GTATCC 1 cut(s) 179
BsuRI GGCC 4 cut(s) 73, 555, 719, 943
BtgI CCRYGG 2 cut(s) 847, 998
BtsCI GGATG 3 cut(s) 286, 661, 1288
BtsI GCAGTG 4 cut(s) 86, 526, 957, 1272
BtsIMutI CAGTG 8 cut(s) 86, 327, 526, 563, 711, 957, 1251, 1272
CaiI CAGNNNCTG 3 cut(s) 326, 977, 1136
CciI TCATGA 1 cut(s) 160
CfoI GCGC 5 cut(s) 12, 516, 917, 1160, 1279
Cfr13I GGNCC 3 cut(s) 71, 259, 1109
CseI GACGC 1 cut(s) 1046
Csp6I GTAC 5 cut(s) 571, 637, 772, 783, 814
CspCI CAANNNNNGTGG 2 cut(s) 515, 550
CviAII CATG 3 cut(s) 161, 1268, 1287
CviQI GTAC 5 cut(s) 571, 637, 772, 783, 814
DdeI CTNAG 3 cut(s) 294, 883, 1123
DpnI GATC 7 cut(s) 110, 522, 660, 996, 1038, 1049, 1152
DpnII GATC 7 cut(s) 108, 520, 658, 994, 1036, 1047, 1150
EaeI YGGCCR 1 cut(s) 553
Eam1104I CTCTTC 5 cut(s) 294, 595, 606, 921, 1065
EarI CTCTTC 5 cut(s) 294, 595, 606, 921, 1065
Eco130I CCWWGG 1 cut(s) 533
Eco147I AGGCCT 1 cut(s) 943
Eco47I GGWCC 2 cut(s) 259, 1109
Eco47III AGCGCT 1 cut(s) 515
Eco57I CTGAAG 3 cut(s) 234, 303, 793
Eco81I CCTNAGG 1 cut(s) 294
Eco88I CYCGRG 1 cut(s) 1189
EcoO109I RGGNCCY 1 cut(s) 259
EcoRII CCWGG 3 cut(s) 80, 262, 346
EcoT14I CCWWGG 1 cut(s) 533
EcoT22I ATGCAT 2 cut(s) 551, 1288
ErhI CCWWGG 1 cut(s) 533
Esp3I CGTCTC 1 cut(s) 592
FaeI CATG 3 cut(s) 164, 1271, 1290
FaqI GGGAC 2 cut(s) 272, 682
FatI CATG 3 cut(s) 160, 1267, 1286
FauNDI CATATG 2 cut(s) 768, 799
FbaI TGATCA 3 cut(s) 108, 520, 658
FblI GTMKAC 1 cut(s) 15
FokI GGATG 2 cut(s) 273, 668
FspBI CTAG 1 cut(s) 869
FspI TGCGCA 1 cut(s) 1278
GlaI GCGC 5 cut(s) 11, 515, 916, 1159, 1278
GsaI CCCAGC 1 cut(s) 1216
GsuI CTGGAG 1 cut(s) 102
HaeII RGCGCY 1 cut(s) 517
HaeIII GGCC 4 cut(s) 73, 555, 719, 943
HgaI GACGC 1 cut(s) 1046
HhaI GCGC 5 cut(s) 12, 516, 917, 1160, 1279
Hin1II CATG 3 cut(s) 164, 1271, 1290
Hin6I GCGC 5 cut(s) 10, 514, 915, 1158, 1277
HinP1I GCGC 5 cut(s) 10, 514, 915, 1158, 1277
HinfI GANTC 4 cut(s) 314, 692, 983, 1133
HphI GGTGA 3 cut(s) 515, 1043, 1145
Hpy166II GTNNAC 3 cut(s) 16, 752, 841
Hpy188I TCNGA 5 cut(s) 308, 792, 886, 1126, 1150
Hpy188III TCNNGA 3 cut(s) 25, 161, 869
Hpy8I GTNNAC 3 cut(s) 16, 752, 841
Hpy99I CGWCG 1 cut(s) 1062
HpyAV CCTTC 4 cut(s) 164, 395, 673, 1194
HpyCH4III ACNGT 3 cut(s) 673, 848, 1002
HpyCH4IV ACGT 1 cut(s) 615
HpyCH4V TGCA 9 cut(s) 182, 498, 549, 561, 609, 937, 962, 1223, 1286
HpyF10VI GCNNNNNNNGC 5 cut(s) 504, 513, 968, 1127, 1283
HpyF3I CTNAG 3 cut(s) 294, 883, 1123
HpySE526I ACGT 1 cut(s) 615
Hsp92II CATG 3 cut(s) 164, 1271, 1290
HspAI GCGC 5 cut(s) 10, 514, 915, 1158, 1277
KflI GGGWCCC 1 cut(s) 259
KpnI GGTACC 1 cut(s) 786
Ksp22I TGATCA 3 cut(s) 108, 520, 658
Kzo9I GATC 7 cut(s) 108, 520, 658, 994, 1036, 1047, 1150
LmnI GCTCC 5 cut(s) 121, 511, 1101, 1165, 1209
LweI GCATC 3 cut(s) 67, 1168, 1273
MaeI CTAG 1 cut(s) 869
MaeII ACGT 1 cut(s) 615
MaeIII GTNAC 5 cut(s) 84, 94, 446, 1249, 1270
MalI GATC 7 cut(s) 110, 522, 660, 996, 1038, 1049, 1152
MbiI CCGCTC 1 cut(s) 821
MboI GATC 7 cut(s) 108, 520, 658, 994, 1036, 1047, 1150
MfeI CAATTG 1 cut(s) 502
MflI RGATCY 3 cut(s) 994, 1036, 1047
MlsI TGGCCA 1 cut(s) 555
MluCI AATT 4 cut(s) 164, 389, 502, 1218
MluNI TGGCCA 1 cut(s) 555
MlyI GAGTC 1 cut(s) 1127
Mox20I TGGCCA 1 cut(s) 555
Mph1103I ATGCAT 2 cut(s) 551, 1288
MscI TGGCCA 1 cut(s) 555
MseI TTAA 1 cut(s) 642
MslI CAYNNNNRTG 4 cut(s) 197, 455, 614, 1291
Msp20I TGGCCA 1 cut(s) 555
MspR9I CCNGG 3 cut(s) 82, 264, 348
MunI CAATTG 1 cut(s) 502
MvaI CCWGG 3 cut(s) 82, 264, 348
MvnI CGCG 4 cut(s) 12, 146, 915, 1158
MwoI GCNNNNNNNGC 5 cut(s) 504, 513, 968, 1127, 1283
NdeI CATATG 2 cut(s) 768, 799
NdeII GATC 7 cut(s) 108, 520, 658, 994, 1036, 1047, 1150
NlaIII CATG 3 cut(s) 164, 1271, 1290
NlaIV GGNNCC 5 cut(s) 152, 260, 261, 784, 996
NmuCI GTSAC 5 cut(s) 84, 94, 446, 1249, 1270
NsbI TGCGCA 1 cut(s) 1278
NsiI ATGCAT 2 cut(s) 551, 1288
NspI RCATGY 1 cut(s) 1290
PaeR7I CTCGAG 1 cut(s) 1189
PagI TCATGA 1 cut(s) 160
PceI AGGCCT 1 cut(s) 943
PcsI WCGNNNNNNNCGW 2 cut(s) 132, 472
PfeI GAWTC 3 cut(s) 314, 692, 983
PflMI CCANNNNNTGG 1 cut(s) 353
PleI GAGTC 1 cut(s) 1127
PpsI GAGTC 1 cut(s) 1127
Ppu21I YACGTR 1 cut(s) 616
PpuMI RGGWCCY 1 cut(s) 259
Psp5II RGGWCCY 1 cut(s) 259
Psp6I CCWGG 3 cut(s) 80, 262, 346
PspFI CCCAGC 1 cut(s) 1212
PspGI CCWGG 3 cut(s) 80, 262, 346
PspN4I GGNNCC 5 cut(s) 152, 260, 261, 784, 996
PspPI GGNCC 3 cut(s) 71, 259, 1109
PspPPI RGGWCCY 1 cut(s) 259
PspXI VCTCGAGB 1 cut(s) 1189
PsrI GAACNNNNNNTAC 2 cut(s) 797, 829
PstNI CAGNNNCTG 3 cut(s) 326, 977, 1136
PsuI RGATCY 3 cut(s) 994, 1036, 1047
RsaI GTAC 5 cut(s) 572, 638, 773, 784, 815
RsaNI GTAC 5 cut(s) 571, 637, 772, 783, 814
RseI CAYNNNNRTG 4 cut(s) 197, 455, 614, 1291
SaqAI TTAA 1 cut(s) 642
Sau3AI GATC 7 cut(s) 108, 520, 658, 994, 1036, 1047, 1150
Sau96I GGNCC 3 cut(s) 71, 259, 1109
SchI GAGTC 1 cut(s) 1127
ScrFI CCNGG 3 cut(s) 82, 264, 348
SfaNI GCATC 3 cut(s) 67, 1168, 1273
Sfr274I CTCGAG 1 cut(s) 1189
SinI GGWCC 2 cut(s) 259, 1109
SlaI CTCGAG 1 cut(s) 1189
SmiMI CAYNNNNRTG 4 cut(s) 197, 455, 614, 1291
SmlI CTYRAG 1 cut(s) 1189
SmoI CTYRAG 1 cut(s) 1189
Sse9I AATT 4 cut(s) 164, 389, 502, 1218
SseBI AGGCCT 1 cut(s) 943
SsiI CCGC 4 cut(s) 630, 821, 1112, 1156
SspI AATATT 1 cut(s) 1066
SspMI CTAG 1 cut(s) 869
StuI AGGCCT 1 cut(s) 943
StyD4I CCNGG 3 cut(s) 80, 262, 346
StyI CCWWGG 1 cut(s) 533
TaaI ACNGT 3 cut(s) 673, 848, 1002
TaiI ACGT 1 cut(s) 618
TaqI TCGA 3 cut(s) 664, 1171, 1190
TasI AATT 4 cut(s) 164, 389, 502, 1218
TatI WGTACW 1 cut(s) 636
TfiI GAWTC 3 cut(s) 314, 692, 983
Tru1I TTAA 1 cut(s) 642
Tru9I TTAA 1 cut(s) 642
TscAI CASTG 8 cut(s) 93, 327, 533, 563, 711, 964, 1258, 1279
TseFI GTSAC 5 cut(s) 84, 94, 446, 1249, 1270
Tsp45I GTSAC 5 cut(s) 84, 94, 446, 1249, 1270
TspDTI ATGAA 4 cut(s) 34, 177, 701, 718
TspGWI ACGGA 1 cut(s) 916
TspRI CASTG 8 cut(s) 93, 327, 533, 563, 711, 964, 1258, 1279
Van91I CCANNNNNTGG 1 cut(s) 353
VpaK11BI GGWCC 2 cut(s) 259, 1109
XapI RAATTY 1 cut(s) 164
XbaI TCTAGA 1 cut(s) 868
XceI RCATGY 1 cut(s) 1290
XcmI CCANNNNNNNNNTGG 1 cut(s) 199
XhoI CTCGAG 1 cut(s) 1189
XmiI GTMKAC 1 cut(s) 15
XspI CTAG 1 cut(s) 869
Zsp2I ATGCAT 2 cut(s) 551, 1288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.