AT4G24700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015127
Physical Location & Seq
Reverse (-)
12744570 .. 12745352
783 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G24700.1

Sequence Viewer

Length: 432 bp
ATGAGGAAGAAACGAGAGGCTAAAGATGAAAATGAAGAAGAAGAAGAGGAGAAGAAGAAGAGACTAGAGTTGATGAAGGCAGCTGCGCAGGCTTGGCTCAGCCACTCCCAAACCTCAAAACATACTGTTTTAGAGTTCGATGCGCAGAGAAAGCATGCTTTTGTCAAAGGGAAGGCATCACGTTTCAAAACGGAAGCCTTGTCCGCAAAGCATCATCCGTCGTTTTTGGATTGGGAATTCGGACAGTCGCTGTGGGATCCCTACGAGATTCTTTCGGTCTCTAAGAAACTGGAACGCGAACTCACTTTAGAAGAACAAACCTTCTCTTCTTCAGATAATGATGGCCTCAAGAAGATGAAGAAGAAGAAAACTAGAGACAGCAGAAACAGCCTTAGGAGTTTGTTCACTCGTTCGTCTTCAAAGAGATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

16.86

Weight (kDa)

9.72

Isoelectric Point (pI)

60.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015127)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24700
fragaria_vesca FvH4_5g06310
malus_domestica MD06G1165700.v1.1 MD14G1171300.v1.1
prunus_persica Prupe.5G165400_v2.0.a1
pyrus_communis pycom06g14820
rosa_chinensis RchiOBHm_Chr7g0192551
rosa_laevigata RLG00000004353
rosa_multiflora Rmu_sc0003108.1_g000040
rosa_roxburghii Rroxscaffold_3G00262940
rosa_rugosa Rorug07G0002100
rosa_samantha Rh7AG126600 Rh7BG128800 Rh7CG130600 Rh7DG130100
rosa_wichuraiana Rw7G010880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 87, 144
AccII CGCG 1 cut(s) 297
AciI CCGC 1 cut(s) 204
AclWI GGATC 2 cut(s) 251, 264
AcsI RAATTY 1 cut(s) 236
AcuI CTGAAG 1 cut(s) 315
AgsI TTSAA 2 cut(s) 187, 420
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
Alw26I GTCTC 3 cut(s) 55, 283, 369
AlwI GGATC 2 cut(s) 251, 264
AlwNI CAGNNNCTG 1 cut(s) 250
AoxI GGCC 1 cut(s) 343
ApeKI GCWGC 2 cut(s) 80, 83
ApoI RAATTY 1 cut(s) 236
AspLEI GCGC 2 cut(s) 88, 145
AxyI CCTNAGG 1 cut(s) 392
BamHI GGATCC 1 cut(s) 256
BbsI GAAGAC 1 cut(s) 408
BbvI GCAGC 2 cut(s) 70, 92
BccI CCATC 1 cut(s) 335
BcoDI GTCTC 3 cut(s) 55, 283, 369
BfaI CTAG 2 cut(s) 65, 372
BisI GCNGC 2 cut(s) 81, 84
BlpI GCTNAGC 1 cut(s) 98
BlsI GCNGC 2 cut(s) 82, 85
BmiI GGNNCC 1 cut(s) 258
BmsI GCATC 3 cut(s) 130, 185, 220
BpiI GAAGAC 1 cut(s) 408
Bpu1102I GCTNAGC 1 cut(s) 98
BpuEI CTTGAG 1 cut(s) 332
BsaI GGTCTC 1 cut(s) 283
Bse1I ACTGG 1 cut(s) 294
Bse21I CCTNAGG 1 cut(s) 392
BseGI GGATG 1 cut(s) 214
BseMII CTCAG 1 cut(s) 112
BseNI ACTGG 1 cut(s) 294
BseRI GAGGAG 1 cut(s) 62
BseXI GCAGC 2 cut(s) 70, 92
Bsh1236I CGCG 1 cut(s) 297
BshFI GGCC 1 cut(s) 345
BsmAI GTCTC 3 cut(s) 55, 283, 369
BsnI GGCC 1 cut(s) 345
Bso31I GGTCTC 1 cut(s) 283
Bsp143I GATC 1 cut(s) 256
Bsp1720I GCTNAGC 1 cut(s) 98
BspACI CCGC 1 cut(s) 204
BspANI GGCC 1 cut(s) 345
BspCNI CTCAG 1 cut(s) 111
BspFNI CGCG 1 cut(s) 297
BspLI GGNNCC 1 cut(s) 258
BspPI GGATC 2 cut(s) 251, 264
BspTNI GGTCTC 1 cut(s) 283
BsrI ACTGG 1 cut(s) 294
BssMI GATC 1 cut(s) 256
Bst4CI ACNGT 2 cut(s) 127, 246
Bst6I CTCTTC 3 cut(s) 39, 53, 331
BstC8I GCNNGC 2 cut(s) 90, 156
BstDEI CTNAG 3 cut(s) 98, 282, 392
BstF5I GGATG 1 cut(s) 214
BstFNI CGCG 1 cut(s) 297
BstHHI GCGC 2 cut(s) 88, 145
BstKTI GATC 1 cut(s) 259
BstMAI GTCTC 3 cut(s) 55, 283, 369
BstMBI GATC 1 cut(s) 256
BstMWI GCNNNNNNNGC 5 cut(s) 89, 94, 151, 203, 387
BstNSI RCATGY 1 cut(s) 158
BstUI CGCG 1 cut(s) 297
BstV1I GCAGC 2 cut(s) 70, 92
BstV2I GAAGAC 1 cut(s) 408
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
Bsu36I CCTNAGG 1 cut(s) 392
BsuRI GGCC 1 cut(s) 345
BtsCI GGATG 1 cut(s) 214
Cac8I GCNNGC 2 cut(s) 90, 156
CaiI CAGNNNCTG 1 cut(s) 250
CfoI GCGC 2 cut(s) 88, 145
CviAII CATG 1 cut(s) 155
CviJI RGCY 8 cut(s) 20, 83, 92, 97, 102, 197, 345, 390
CviKI_1 RGCY 8 cut(s) 20, 83, 92, 97, 102, 197, 345, 390
DdeI CTNAG 3 cut(s) 98, 282, 392
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
Eam1104I CTCTTC 3 cut(s) 39, 53, 331
EarI CTCTTC 3 cut(s) 39, 53, 331
Eco31I GGTCTC 1 cut(s) 283
Eco57I CTGAAG 1 cut(s) 315
Eco81I CCTNAGG 1 cut(s) 392
EcoRI GAATTC 1 cut(s) 236
FaeI CATG 1 cut(s) 158
FaiI YATR 2 cut(s) 123, 156
FatI CATG 1 cut(s) 154
Fnu4HI GCNGC 2 cut(s) 81, 84
FokI GGATG 1 cut(s) 201
Fsp4HI GCNGC 2 cut(s) 81, 84
FspBI CTAG 2 cut(s) 65, 372
FspI TGCGCA 2 cut(s) 87, 144
GlaI GCGC 2 cut(s) 87, 144
GluI GCNGC 2 cut(s) 81, 84
HaeIII GGCC 1 cut(s) 345
HhaI GCGC 2 cut(s) 88, 145
Hin1II CATG 1 cut(s) 158
Hin6I GCGC 2 cut(s) 86, 143
HinP1I GCGC 2 cut(s) 86, 143
HinfI GANTC 2 cut(s) 268, 426
Hpy166II GTNNAC 1 cut(s) 405
Hpy188I TCNGA 2 cut(s) 242, 334
Hpy188III TCNNGA 1 cut(s) 349
Hpy8I GTNNAC 1 cut(s) 405
Hpy99I CGWCG 1 cut(s) 223
HpyAV CCTTC 3 cut(s) 70, 166, 331
HpyCH4III ACNGT 2 cut(s) 127, 246
HpyCH4IV ACGT 1 cut(s) 181
HpyF10VI GCNNNNNNNGC 5 cut(s) 89, 94, 151, 203, 387
HpyF3I CTNAG 3 cut(s) 98, 282, 392
HpySE526I ACGT 1 cut(s) 181
Hsp92II CATG 1 cut(s) 158
HspAI GCGC 2 cut(s) 86, 143
Kzo9I GATC 1 cut(s) 256
LpnPI CCDG 2 cut(s) 74, 275
Lsp1109I GCAGC 2 cut(s) 70, 92
LweI GCATC 3 cut(s) 130, 185, 220
MaeI CTAG 2 cut(s) 65, 372
MaeII ACGT 1 cut(s) 181
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MflI RGATCY 1 cut(s) 256
MluCI AATT 1 cut(s) 236
MnlI CCTC 4 cut(s) 10, 40, 124, 356
MspA1I CMGCKG 1 cut(s) 83
MvnI CGCG 1 cut(s) 297
MwoI GCNNNNNNNGC 5 cut(s) 89, 94, 151, 203, 387
NdeII GATC 1 cut(s) 256
NlaIII CATG 1 cut(s) 158
NlaIV GGNNCC 1 cut(s) 258
NsbI TGCGCA 2 cut(s) 87, 144
NspI RCATGY 1 cut(s) 158
PaeI GCATGC 1 cut(s) 158
PfeI GAWTC 2 cut(s) 268, 426
PkrI GCNGC 2 cut(s) 82, 85
PspN4I GGNNCC 1 cut(s) 258
PstNI CAGNNNCTG 1 cut(s) 250
PsuI RGATCY 1 cut(s) 256
PvuII CAGCTG 1 cut(s) 83
SatI GCNGC 2 cut(s) 81, 84
Sau3AI GATC 1 cut(s) 256
SetI ASST 4 cut(s) 85, 116, 184, 323
SfaNI GCATC 3 cut(s) 130, 185, 220
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
SphI GCATGC 1 cut(s) 158
Sse9I AATT 1 cut(s) 236
SsiI CCGC 1 cut(s) 204
SspMI CTAG 2 cut(s) 65, 372
TaaI ACNGT 2 cut(s) 127, 246
TaiI ACGT 1 cut(s) 184
TaqI TCGA 1 cut(s) 138
TaqII GACCGA 1 cut(s) 265
TasI AATT 1 cut(s) 236
TfiI GAWTC 2 cut(s) 268, 426
TseI GCWGC 2 cut(s) 80, 83
TspDTI ATGAA 4 cut(s) 42, 48, 89, 371
TspGWI ACGGA 2 cut(s) 206, 207
XapI RAATTY 1 cut(s) 236
XceI RCATGY 1 cut(s) 158
XspI CTAG 2 cut(s) 65, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.