MD06G1165700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0015127
Physical Location & Seq
Forward (+)
30573043 .. 30573450
408 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1165700.v1.1.491

Sequence Viewer

Length: 408 bp
ATGAAGCAAAAGTTACAGCTTAAAGATGACAGAGAACTTGAAATCCTCAAGGCTGTGGCACAAGCTTGGTACAGCCACTCCGGCCGCTCTCAGCTCATGTCCGAATTTGACACCCGCCCGAGAAATTACAACGGCAAATCGCCATCCCGGTTCAAGCTTGAAGCAATGAGAAAATCATCATCAGCTGGTGATACAAAATGGGATTTCGGGCAGTCACTATGGGATGCTTATGAGATTGTGGCCGTTTCGAAAAGGTTAGAGACAGGGCTAGTCCTTGATGAGTTGGAGAGTGTGGCACGAGTCCGTCAGAGGCGTAGGGAGAGCAAGCACAGCCTTAGAAGTTTATTCAATAAAATATCTTCAAGAAGATTGGATGAGGCTAATGTTCCCCCAGATAACGATCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.67

Weight (kDa)

9.73

Isoelectric Point (pI)

63.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015127)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24700
fragaria_vesca FvH4_5g06310
malus_domestica MD06G1165700.v1.1 MD14G1171300.v1.1
prunus_persica Prupe.5G165400_v2.0.a1
pyrus_communis pycom06g14820
rosa_chinensis RchiOBHm_Chr7g0192551
rosa_laevigata RLG00000004353
rosa_multiflora Rmu_sc0003108.1_g000040
rosa_roxburghii Rroxscaffold_3G00262940
rosa_rugosa Rorug07G0002100
rosa_samantha Rh7AG126600 Rh7BG128800 Rh7CG130600 Rh7DG130100
rosa_wichuraiana Rw7G010880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 87
AciI CCGC 2 cut(s) 85, 115
AclWI GGATC 1 cut(s) 395
AcoI YGGCCR 2 cut(s) 82, 240
AcsI RAATTY 1 cut(s) 104
AfaI GTAC 1 cut(s) 71
AgsI TTSAA 5 cut(s) 41, 154, 161, 349, 363
AloI GAACNNNNNNTCC 2 cut(s) 27, 59
AluBI AGCT 5 cut(s) 19, 65, 94, 157, 185
AluI AGCT 5 cut(s) 19, 65, 94, 157, 185
Alw26I GTCTC 1 cut(s) 254
AlwI GGATC 1 cut(s) 395
Ama87I CYCGRG 1 cut(s) 118
AoxI GGCC 2 cut(s) 82, 240
ApoI RAATTY 1 cut(s) 104
AsuC2I CCSGG 1 cut(s) 148
AsuHPI GGTGA 1 cut(s) 200
AsuII TTCGAA 1 cut(s) 248
AvaI CYCGRG 1 cut(s) 118
BauI CACGAG 1 cut(s) 297
BccI CCATC 1 cut(s) 151
BceAI ACGGC 2 cut(s) 148, 227
BcnI CCSGG 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 254
BfaI CTAG 1 cut(s) 269
BglI GCCNNNNNGGC 1 cut(s) 81
BisI GCNGC 1 cut(s) 85
BlsI GCNGC 1 cut(s) 86
Bme1390I CCNGG 1 cut(s) 148
BmeT110I CYCGRG 1 cut(s) 118
BmrFI CCNGG 1 cut(s) 148
BmsI GCATC 1 cut(s) 214
Bpu14I TTCGAA 1 cut(s) 248
BpuEI CTTGAG 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 148
BsaBI GATNNNNATC 1 cut(s) 399
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bse3DI GCAATG 1 cut(s) 171
Bse8I GATNNNNATC 1 cut(s) 399
BseGI GGATG 3 cut(s) 143, 229, 379
BseJI GATNNNNATC 1 cut(s) 399
BseMI GCAATG 1 cut(s) 171
BseMII CTCAG 1 cut(s) 104
BseX3I CGGCCG 1 cut(s) 82
Bsh1285I CGRYCG 1 cut(s) 85
BshFI GGCC 2 cut(s) 84, 242
BsiEI CGRYCG 1 cut(s) 85
BsiHKCI CYCGRG 1 cut(s) 118
BsiSI CCGG 2 cut(s) 81, 148
BsmAI GTCTC 1 cut(s) 254
BsnI GGCC 2 cut(s) 84, 242
BsoBI CYCGRG 1 cut(s) 118
Bsp119I TTCGAA 1 cut(s) 248
Bsp143I GATC 1 cut(s) 400
BspACI CCGC 2 cut(s) 85, 115
BspANI GGCC 2 cut(s) 84, 242
BspCNI CTCAG 1 cut(s) 103
BspPI GGATC 1 cut(s) 395
BspT104I TTCGAA 1 cut(s) 248
BsrBI CCGCTC 1 cut(s) 87
BsrDI GCAATG 1 cut(s) 171
BssMI GATC 1 cut(s) 400
BssSI CACGAG 1 cut(s) 297
Bst2BI CACGAG 1 cut(s) 297
BstBI TTCGAA 1 cut(s) 248
BstC8I GCNNGC 1 cut(s) 326
BstDEI CTNAG 2 cut(s) 90, 335
BstF5I GGATG 3 cut(s) 143, 229, 379
BstKTI GATC 1 cut(s) 403
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 1 cut(s) 400
BstMCI CGRYCG 1 cut(s) 85
BstMWI GCNNNNNNNGC 2 cut(s) 81, 330
BstSCI CCNGG 1 cut(s) 146
BstZI CGGCCG 1 cut(s) 82
BsuRI GGCC 2 cut(s) 84, 242
BtsCI GGATG 3 cut(s) 143, 229, 379
Cac8I GCNNGC 1 cut(s) 326
Csp6I GTAC 1 cut(s) 70
CviAII CATG 1 cut(s) 97
CviQI GTAC 1 cut(s) 70
DdeI CTNAG 2 cut(s) 90, 335
DpnI GATC 1 cut(s) 402
DpnII GATC 1 cut(s) 400
EaeI YGGCCR 2 cut(s) 82, 240
EagI CGGCCG 1 cut(s) 82
EclXI CGGCCG 1 cut(s) 82
Eco52I CGGCCG 1 cut(s) 82
Eco88I CYCGRG 1 cut(s) 118
FaeI CATG 1 cut(s) 100
FaiI YATR 4 cut(s) 98, 220, 231, 406
FatI CATG 1 cut(s) 96
FauI CCCGC 1 cut(s) 122
Fnu4HI GCNGC 1 cut(s) 85
FokI GGATG 3 cut(s) 130, 236, 386
Fsp4HI GCNGC 1 cut(s) 85
FspBI CTAG 1 cut(s) 269
GluI GCNGC 1 cut(s) 85
HaeIII GGCC 2 cut(s) 84, 242
HapII CCGG 2 cut(s) 81, 148
Hin1II CATG 1 cut(s) 100
HindIII AAGCTT 2 cut(s) 63, 155
HinfI GANTC 1 cut(s) 300
HpaII CCGG 2 cut(s) 81, 148
HphI GGTGA 1 cut(s) 200
Hpy188I TCNGA 2 cut(s) 103, 309
Hpy188III TCNNGA 1 cut(s) 363
HpyF10VI GCNNNNNNNGC 2 cut(s) 81, 330
HpyF3I CTNAG 2 cut(s) 90, 335
Hsp92II CATG 1 cut(s) 100
Kzo9I GATC 1 cut(s) 400
LpnPI CCDG 4 cut(s) 94, 161, 171, 249
LweI GCATC 1 cut(s) 214
MaeI CTAG 1 cut(s) 269
MaeIII GTNAC 2 cut(s) 12, 213
MalI GATC 1 cut(s) 402
MbiI CCGCTC 1 cut(s) 87
MboI GATC 1 cut(s) 400
MboII GAAGA 2 cut(s) 351, 378
MluCI AATT 2 cut(s) 104, 124
MlyI GAGTC 1 cut(s) 309
MmeI TCCRAC 1 cut(s) 264
MnlI CCTC 3 cut(s) 56, 303, 370
MseI TTAA 1 cut(s) 21
MspA1I CMGCKG 1 cut(s) 185
MspI CCGG 2 cut(s) 81, 148
MspR9I CCNGG 1 cut(s) 148
MwoI GCNNNNNNNGC 2 cut(s) 81, 330
NciI CCSGG 1 cut(s) 148
NdeII GATC 1 cut(s) 400
NlaIII CATG 1 cut(s) 100
NmuCI GTSAC 1 cut(s) 213
NspV TTCGAA 1 cut(s) 248
PkrI GCNGC 1 cut(s) 86
PleI GAGTC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 308
PvuII CAGCTG 1 cut(s) 185
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 1 cut(s) 85
Sau3AI GATC 1 cut(s) 400
SchI GAGTC 1 cut(s) 309
ScrFI CCNGG 1 cut(s) 148
SetI ASST 6 cut(s) 21, 67, 96, 159, 187, 257
SfaNI GCATC 1 cut(s) 214
SfuI TTCGAA 1 cut(s) 248
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 2 cut(s) 104, 124
SsiI CCGC 2 cut(s) 85, 115
SspMI CTAG 1 cut(s) 269
StyD4I CCNGG 1 cut(s) 146
TaqI TCGA 1 cut(s) 248
TasI AATT 2 cut(s) 104, 124
TauI GCSGC 1 cut(s) 87
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TseFI GTSAC 1 cut(s) 213
Tsp45I GTSAC 1 cut(s) 213
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 293
XapI RAATTY 1 cut(s) 104
XspI CTAG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.