Prupe.5G165400_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
14370857 .. 14371935
1079 bp
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UTR
Exon/CDS
Intron
Prupe.5G165400.1

Sequence Viewer

Length: 438 bp
ATGAAGAAAAAGTTACAGCCTGAGGATGACAGAGAACTTGAAATTCTCAAGGCTGTGGCACAAGCTTGGTACAGCCACTCCAGCGGCTCTAGGCCCACGTCCGAATTTGATGCTCACCGGAGAAATTTCACAGGCAGATTACCGTCTCGGTTCAAGCTCGAAGCGATGAGAAAGTCTACATCAGCTAGTAATCAGGCTAGTGGTTATGCAGCATGGGACTTTGGGCAGTCACTATGGGATGCTTATGAGATTGTGGCTGTGTCCAAAAGGTTAGAGACTGGGTTATTCGTTGATGAAAATCCATTCAATAAGCTGGATAGTCCGACCCGAGTCATTAGGAGGCGTAGGGAGAGCAAGCACAGCCTCAGAAGTTTGTTTGATAAAATGTCTTCAAGGAGATTTAATGAGGCTGATGTTCCACCTGATAATGATACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.75

Weight (kDa)

9.64

Isoelectric Point (pI)

69.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015127)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24700
fragaria_vesca FvH4_5g06310
malus_domestica MD06G1165700.v1.1 MD14G1171300.v1.1
prunus_persica Prupe.5G165400_v2.0.a1
pyrus_communis pycom06g14820
rosa_chinensis RchiOBHm_Chr7g0192551
rosa_laevigata RLG00000004353
rosa_multiflora Rmu_sc0003108.1_g000040
rosa_roxburghii Rroxscaffold_3G00262940
rosa_rugosa Rorug07G0002100
rosa_samantha Rh7AG126600 Rh7BG128800 Rh7CG130600 Rh7DG130100
rosa_wichuraiana Rw7G010880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 176
AciI CCGC 1 cut(s) 84
AcsI RAATTY 3 cut(s) 42, 104, 124
AfaI GTAC 1 cut(s) 71
AgsI TTSAA 4 cut(s) 41, 154, 307, 393
AjiI CACGTC 1 cut(s) 99
AluBI AGCT 4 cut(s) 65, 157, 185, 313
AluI AGCT 4 cut(s) 65, 157, 185, 313
Alw26I GTCTC 2 cut(s) 150, 269
Ama87I CYCGRG 1 cut(s) 327
AoxI GGCC 1 cut(s) 92
ApeKI GCWGC 1 cut(s) 209
ApoI RAATTY 3 cut(s) 42, 104, 124
AspS9I GGNCC 1 cut(s) 93
AsuHPI GGTGA 1 cut(s) 107
AvaI CYCGRG 1 cut(s) 327
AxyI CCTNAGG 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 381
BbvI GCAGC 1 cut(s) 221
BcgI CGANNNNNNTGC 2 cut(s) 92, 126
BcoDI GTCTC 2 cut(s) 150, 269
BfaI CTAG 3 cut(s) 90, 186, 198
BisI GCNGC 2 cut(s) 85, 210
BlsI GCNGC 2 cut(s) 86, 211
BmeT110I CYCGRG 1 cut(s) 327
BmgBI CACGTC 1 cut(s) 99
BmgT120I GGNCC 1 cut(s) 93
BmrI ACTGGG 1 cut(s) 288
BmsI GCATC 2 cut(s) 100, 229
BmuI ACTGGG 1 cut(s) 288
BoxI GACNNNNGTC 1 cut(s) 329
BpiI GAAGAC 1 cut(s) 381
BpmI CTGGAG 1 cut(s) 64
BpuEI CTTGAG 1 cut(s) 32
BsaBI GATNNNNATC 1 cut(s) 297
BsaWI WCCGGW 1 cut(s) 117
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bse1I ACTGG 1 cut(s) 283
Bse21I CCTNAGG 1 cut(s) 21
Bse8I GATNNNNATC 1 cut(s) 297
BseGI GGATG 2 cut(s) 31, 244
BseJI GATNNNNATC 1 cut(s) 297
BseMII CTCAG 2 cut(s) 12, 379
BseNI ACTGG 1 cut(s) 283
BseXI GCAGC 1 cut(s) 221
BshFI GGCC 1 cut(s) 94
BsiHKCI CYCGRG 1 cut(s) 327
BsiSI CCGG 1 cut(s) 118
BslFI GGGAC 1 cut(s) 230
BsmAI GTCTC 2 cut(s) 150, 269
BsmBI CGTCTC 1 cut(s) 150
BsmFI GGGAC 1 cut(s) 230
BsnI GGCC 1 cut(s) 94
BsoBI CYCGRG 1 cut(s) 327
BspACI CCGC 1 cut(s) 84
BspANI GGCC 1 cut(s) 94
BspCNI CTCAG 2 cut(s) 13, 378
BsrI ACTGG 1 cut(s) 283
Bst4CI ACNGT 1 cut(s) 144
BstC8I GCNNGC 1 cut(s) 356
BstDEI CTNAG 2 cut(s) 21, 365
BstF5I GGATG 2 cut(s) 31, 244
BstMAI GTCTC 2 cut(s) 150, 269
BstMWI GCNNNNNNNGC 2 cut(s) 81, 360
BstPAI GACNNNNGTC 1 cut(s) 329
BstV1I GCAGC 1 cut(s) 221
BstV2I GAAGAC 1 cut(s) 381
Bsu36I CCTNAGG 1 cut(s) 21
BsuRI GGCC 1 cut(s) 94
BtgZI GCGATG 1 cut(s) 179
BtrI CACGTC 1 cut(s) 99
BtsCI GGATG 2 cut(s) 31, 244
Cac8I GCNNGC 1 cut(s) 356
Cfr13I GGNCC 1 cut(s) 93
Csp6I GTAC 1 cut(s) 70
CviAII CATG 1 cut(s) 213
CviQI GTAC 1 cut(s) 70
DdeI CTNAG 2 cut(s) 21, 365
Eco81I CCTNAGG 1 cut(s) 21
Eco88I CYCGRG 1 cut(s) 327
Esp3I CGTCTC 1 cut(s) 150
FaeI CATG 1 cut(s) 216
FaiI YATR 4 cut(s) 207, 214, 235, 246
FaqI GGGAC 1 cut(s) 230
FatI CATG 1 cut(s) 212
FblI GTMKAC 1 cut(s) 176
Fnu4HI GCNGC 2 cut(s) 85, 210
FokI GGATG 2 cut(s) 38, 251
Fsp4HI GCNGC 2 cut(s) 85, 210
FspBI CTAG 3 cut(s) 90, 186, 198
GluI GCNGC 2 cut(s) 85, 210
GsuI CTGGAG 1 cut(s) 64
HaeIII GGCC 1 cut(s) 94
HapII CCGG 1 cut(s) 118
Hin1II CATG 1 cut(s) 216
HindIII AAGCTT 1 cut(s) 63
HinfI GANTC 1 cut(s) 330
HpaII CCGG 1 cut(s) 118
HphI GGTGA 1 cut(s) 107
Hpy166II GTNNAC 1 cut(s) 177
Hpy188I TCNGA 3 cut(s) 103, 324, 368
Hpy8I GTNNAC 1 cut(s) 177
HpyCH4III ACNGT 1 cut(s) 144
HpyCH4IV ACGT 1 cut(s) 98
HpyCH4V TGCA 1 cut(s) 209
HpyF10VI GCNNNNNNNGC 2 cut(s) 81, 360
HpyF3I CTNAG 2 cut(s) 21, 365
HpySE526I ACGT 1 cut(s) 98
Hsp92II CATG 1 cut(s) 216
LpnPI CCDG 7 cut(s) 33, 94, 117, 131, 179, 264, 299
Lsp1109I GCAGC 1 cut(s) 221
LweI GCATC 2 cut(s) 100, 229
MaeI CTAG 3 cut(s) 90, 186, 198
MaeII ACGT 1 cut(s) 98
MaeIII GTNAC 2 cut(s) 12, 228
MboII GAAGA 2 cut(s) 16, 381
MluCI AATT 3 cut(s) 42, 104, 124
MlyI GAGTC 1 cut(s) 339
MmeI TCCRAC 1 cut(s) 347
MnlI CCTC 4 cut(s) 16, 333, 374, 400
MseI TTAA 2 cut(s) 402, 436
MspA1I CMGCKG 1 cut(s) 84
MspI CCGG 1 cut(s) 118
MwoI GCNNNNNNNGC 2 cut(s) 81, 360
NlaIII CATG 1 cut(s) 216
NmuCI GTSAC 1 cut(s) 228
PkrI GCNGC 2 cut(s) 86, 211
PleI GAGTC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 338
PshAI GACNNNNGTC 1 cut(s) 329
PspPI GGNCC 1 cut(s) 93
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
SaqAI TTAA 2 cut(s) 402, 436
SatI GCNGC 2 cut(s) 85, 210
Sau96I GGNCC 1 cut(s) 93
SchI GAGTC 1 cut(s) 339
SetI ASST 7 cut(s) 67, 101, 159, 187, 272, 315, 424
SfaNI GCATC 2 cut(s) 100, 229
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 3 cut(s) 42, 104, 124
SsiI CCGC 1 cut(s) 84
SspMI CTAG 3 cut(s) 90, 186, 198
TaaI ACNGT 1 cut(s) 144
TaiI ACGT 1 cut(s) 101
TaqI TCGA 1 cut(s) 159
TasI AATT 3 cut(s) 42, 104, 124
TauI GCSGC 1 cut(s) 87
Tru1I TTAA 2 cut(s) 402, 436
Tru9I TTAA 2 cut(s) 402, 436
TseFI GTSAC 1 cut(s) 228
TseI GCWGC 1 cut(s) 209
Tsp45I GTSAC 1 cut(s) 228
TspDTI ATGAA 2 cut(s) 17, 309
XapI RAATTY 3 cut(s) 42, 104, 124
XmiI GTMKAC 1 cut(s) 176
XspI CTAG 3 cut(s) 90, 186, 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.