Rmu_sc0003108.1_g000040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003108.1
OG0015127
Physical Location & Seq
Forward (+)
153407 .. 153835
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003108.1_g000040.1.cds

Sequence Viewer

Length: 429 bp
atgaagaaaaagttacagaatgaccatgaacaagaacttgaaatcctcaaggctgtggcacaagcctggcagagccactccggcagctctaggcccatgacggagtttgacgcgcgccggagaaactacaagggcaggttaccgtctcggttcaagctcgaagcaatgagaaaagcagcatcatctagtgagagtggtactaatgcaaaatgggactttggacagtcactgtgggatgcttatgagattgtggcagtgtccaaaaggttagaatcagggttagtacttgatggtgagctagatggttcttcgggtagggtccatcggaggcgtagagagagtaagaacagccttaggaatttgttcgataaaaggtcttcaaggagatatactgaggctgctataccacacactgatgatgatacttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

16.31

Weight (kDa)

9.86

Isoelectric Point (pI)

74.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015127)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24700
fragaria_vesca FvH4_5g06310
malus_domestica MD06G1165700.v1.1 MD14G1171300.v1.1
prunus_persica Prupe.5G165400_v2.0.a1
pyrus_communis pycom06g14820
rosa_chinensis RchiOBHm_Chr7g0192551
rosa_laevigata RLG00000004353
rosa_multiflora Rmu_sc0003108.1_g000040
rosa_roxburghii Rroxscaffold_3G00262940
rosa_rugosa Rorug07G0002100
rosa_samantha Rh7AG126600 Rh7BG128800 Rh7CG130600 Rh7DG130100
rosa_wichuraiana Rw7G010880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 126
AccII CGCG 2 cut(s) 113, 115
AcsI RAATTY 1 cut(s) 358
AfaI GTAC 2 cut(s) 199, 285
AgsI TTSAA 3 cut(s) 41, 154, 381
AjnI CCWGG 1 cut(s) 65
AloI GAACNNNNNNTCC 2 cut(s) 27, 59
AluBI AGCT 3 cut(s) 87, 157, 298
AluI AGCT 3 cut(s) 87, 157, 298
Alw26I GTCTC 1 cut(s) 150
AlwNI CAGNNNCTG 1 cut(s) 229
AoxI GGCC 1 cut(s) 92
ApeKI GCWGC 3 cut(s) 84, 176, 398
ApoI RAATTY 1 cut(s) 358
Asp700I GAANNNNTTC 1 cut(s) 362
AspLEI GCGC 2 cut(s) 115, 117
AspS9I GGNCC 2 cut(s) 93, 319
AsuHPI GGTGA 1 cut(s) 305
AvaII GGWCC 1 cut(s) 319
AxyI CCTNAGG 1 cut(s) 353
BbsI GAAGAC 1 cut(s) 369
BbvI GCAGC 3 cut(s) 96, 188, 385
BccI CCATC 3 cut(s) 284, 296, 330
BciT130I CCWGG 1 cut(s) 67
BcoDI GTCTC 1 cut(s) 150
BfaI CTAG 3 cut(s) 90, 186, 299
BfuAI ACCTGC 1 cut(s) 126
BglI GCCNNNNNGGC 1 cut(s) 81
BisI GCNGC 3 cut(s) 85, 177, 399
BlsI GCNGC 3 cut(s) 86, 178, 400
BmcAI AGTACT 1 cut(s) 285
Bme1390I CCNGG 1 cut(s) 67
Bme18I GGWCC 1 cut(s) 319
BmgT120I GGNCC 2 cut(s) 93, 319
BmiI GGNNCC 1 cut(s) 320
BmrFI CCNGG 1 cut(s) 67
BmsI GCATC 2 cut(s) 188, 226
BpiI GAAGAC 1 cut(s) 369
BpuEI CTTGAG 1 cut(s) 32
Bse21I CCTNAGG 1 cut(s) 353
Bse3DI GCAATG 1 cut(s) 171
BseBI CCWGG 1 cut(s) 67
BseGI GGATG 1 cut(s) 241
BseMI GCAATG 1 cut(s) 171
BseMII CTCAG 1 cut(s) 384
BsePI GCGCGC 1 cut(s) 113
BseXI GCAGC 3 cut(s) 96, 188, 385
Bsh1236I CGCG 2 cut(s) 113, 115
BshFI GGCC 1 cut(s) 94
BsiSI CCGG 2 cut(s) 81, 118
BslFI GGGAC 1 cut(s) 227
BsmAI GTCTC 1 cut(s) 150
BsmBI CGTCTC 1 cut(s) 150
BsmFI GGGAC 1 cut(s) 227
BsnI GGCC 1 cut(s) 94
BspANI GGCC 1 cut(s) 94
BspCNI CTCAG 1 cut(s) 385
BspFNI CGCG 2 cut(s) 113, 115
BspLI GGNNCC 1 cut(s) 320
BspMI ACCTGC 1 cut(s) 126
BsrDI GCAATG 1 cut(s) 171
BssHII GCGCGC 1 cut(s) 113
Bst2UI CCWGG 1 cut(s) 67
Bst4CI ACNGT 3 cut(s) 144, 225, 231
BstC8I GCNNGC 1 cut(s) 115
BstDEI CTNAG 2 cut(s) 353, 393
BstEII GGTNACC 1 cut(s) 138
BstF5I GGATG 1 cut(s) 241
BstFNI CGCG 2 cut(s) 113, 115
BstHHI GCGC 2 cut(s) 115, 117
BstMAI GTCTC 1 cut(s) 150
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstNI CCWGG 1 cut(s) 67
BstPI GGTNACC 1 cut(s) 138
BstSCI CCNGG 1 cut(s) 65
BstUI CGCG 2 cut(s) 113, 115
BstV1I GCAGC 3 cut(s) 96, 188, 385
BstV2I GAAGAC 1 cut(s) 369
Bsu36I CCTNAGG 1 cut(s) 353
BsuRI GGCC 1 cut(s) 94
BtsCI GGATG 1 cut(s) 241
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 3 cut(s) 227, 261, 411
BveI ACCTGC 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 115
CaiI CAGNNNCTG 1 cut(s) 229
CfoI GCGC 2 cut(s) 115, 117
Cfr13I GGNCC 2 cut(s) 93, 319
CseI GACGC 1 cut(s) 119
Csp6I GTAC 2 cut(s) 198, 284
CviAII CATG 2 cut(s) 26, 97
CviJI RGCY 9 cut(s) 53, 65, 75, 87, 94, 157, 298, 351, 398
CviKI_1 RGCY 9 cut(s) 53, 65, 75, 87, 94, 157, 298, 351, 398
CviQI GTAC 2 cut(s) 198, 284
DdeI CTNAG 2 cut(s) 353, 393
Eco47I GGWCC 1 cut(s) 319
Eco81I CCTNAGG 1 cut(s) 353
Eco91I GGTNACC 1 cut(s) 138
EcoO65I GGTNACC 1 cut(s) 138
EcoRII CCWGG 1 cut(s) 65
Esp3I CGTCTC 1 cut(s) 150
FaeI CATG 2 cut(s) 29, 100
FaiI YATR 5 cut(s) 27, 98, 243, 390, 404
FaqI GGGAC 1 cut(s) 227
FatI CATG 2 cut(s) 25, 96
Fnu4HI GCNGC 3 cut(s) 85, 177, 399
FokI GGATG 1 cut(s) 248
Fsp4HI GCNGC 3 cut(s) 85, 177, 399
FspBI CTAG 3 cut(s) 90, 186, 299
GlaI GCGC 2 cut(s) 114, 116
GluI GCNGC 3 cut(s) 85, 177, 399
HaeIII GGCC 1 cut(s) 94
HapII CCGG 2 cut(s) 81, 118
HgaI GACGC 1 cut(s) 119
HhaI GCGC 2 cut(s) 115, 117
Hin1II CATG 2 cut(s) 29, 100
Hin6I GCGC 2 cut(s) 113, 115
HinP1I GCGC 2 cut(s) 113, 115
HinfI GANTC 1 cut(s) 272
HpaII CCGG 2 cut(s) 81, 118
HphI GGTGA 1 cut(s) 305
Hpy188I TCNGA 1 cut(s) 327
HpyCH4III ACNGT 3 cut(s) 144, 225, 231
HpyCH4V TGCA 1 cut(s) 206
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
HpyF3I CTNAG 2 cut(s) 353, 393
Hsp92II CATG 2 cut(s) 29, 100
HspAI GCGC 2 cut(s) 113, 115
LpnPI CCDG 6 cut(s) 52, 79, 94, 121, 131, 261
Lsp1109I GCAGC 3 cut(s) 96, 188, 385
LweI GCATC 2 cut(s) 188, 226
MaeI CTAG 3 cut(s) 90, 186, 299
MaeIII GTNAC 3 cut(s) 12, 138, 225
MboII GAAGA 3 cut(s) 16, 300, 369
MluCI AATT 1 cut(s) 358
MnlI CCTC 3 cut(s) 56, 321, 388
MroXI GAANNNNTTC 1 cut(s) 362
MseI TTAA 1 cut(s) 427
MslI CAYNNNNRTG 1 cut(s) 414
MspI CCGG 2 cut(s) 81, 118
MspR9I CCNGG 1 cut(s) 67
MvaI CCWGG 1 cut(s) 67
MvnI CGCG 2 cut(s) 113, 115
MwoI GCNNNNNNNGC 1 cut(s) 81
NlaIII CATG 2 cut(s) 29, 100
NlaIV GGNNCC 1 cut(s) 320
NmuCI GTSAC 1 cut(s) 225
PauI GCGCGC 1 cut(s) 113
PdmI GAANNNNTTC 1 cut(s) 362
PfeI GAWTC 1 cut(s) 272
PkrI GCNGC 3 cut(s) 86, 178, 400
Psp6I CCWGG 1 cut(s) 65
PspEI GGTNACC 1 cut(s) 138
PspGI CCWGG 1 cut(s) 65
PspN4I GGNNCC 1 cut(s) 320
PspPI GGNCC 2 cut(s) 93, 319
PstNI CAGNNNCTG 1 cut(s) 229
PteI GCGCGC 1 cut(s) 113
RsaI GTAC 2 cut(s) 199, 285
RsaNI GTAC 2 cut(s) 198, 284
RseI CAYNNNNRTG 1 cut(s) 414
SaqAI TTAA 1 cut(s) 427
SatI GCNGC 3 cut(s) 85, 177, 399
Sau96I GGNCC 2 cut(s) 93, 319
ScaI AGTACT 1 cut(s) 285
ScrFI CCNGG 1 cut(s) 67
SetI ASST 6 cut(s) 89, 140, 159, 269, 300, 377
SfaNI GCATC 2 cut(s) 188, 226
SinI GGWCC 1 cut(s) 319
SmiMI CAYNNNNRTG 1 cut(s) 414
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 1 cut(s) 358
SspMI CTAG 3 cut(s) 90, 186, 299
StyD4I CCNGG 1 cut(s) 65
TaaI ACNGT 3 cut(s) 144, 225, 231
TaqI TCGA 2 cut(s) 159, 366
TasI AATT 1 cut(s) 358
TatI WGTACW 1 cut(s) 283
TfiI GAWTC 1 cut(s) 272
Tru1I TTAA 1 cut(s) 427
Tru9I TTAA 1 cut(s) 427
TscAI CASTG 3 cut(s) 234, 261, 418
TseFI GTSAC 1 cut(s) 225
TseI GCWGC 3 cut(s) 84, 176, 398
Tsp45I GTSAC 1 cut(s) 225
TspDTI ATGAA 2 cut(s) 17, 42
TspGWI ACGGA 1 cut(s) 116
TspRI CASTG 3 cut(s) 234, 261, 418
VpaK11BI GGWCC 1 cut(s) 319
XapI RAATTY 1 cut(s) 358
XmnI GAANNNNTTC 1 cut(s) 362
XspI CTAG 3 cut(s) 90, 186, 299
ZrmI AGTACT 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.