FvH4_5g06310

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0015127
Physical Location & Seq
Reverse (-)
3709937 .. 3710473
537 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g06310.t1

Sequence Viewer

Length: 432 bp
ATGAAGAAAAAGTTACAGCATGACCATGAACAAGAACTTGAAATCCTCAAGGCTGTGGCACAAGCCTGGCAGAGCCACTCCGGCAGCACTAGGCCCATGTCCGAATTTGATGCCCGTCGGAGGAACTACAAGAGCAGGTTACCGTCCCGGTTCAAGCTTGAAGCAATGAGAGAAGCAGCATCATCTTCAGCTAGTGACAGGGGTACCAATGCAAAATGGGACTTTGGGCAGTCACTGTGGGATGCTTATGAGATTGTTGCAGTGTCCAAAAGGTTAGAGTCAGGGTTAGTAATTGATGGTGAGCTAGATGGTTCTTCGGGTAGAGTCCATCGGAGGCGTAGAGAGAGTAAAAACAGCCTCAGGAGCTTGTTTGATAAAATGTCTTCAAGGAGATATACTGAGGCTGATATACCACACACTGATGCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

16.41

Weight (kDa)

9.78

Isoelectric Point (pI)

75.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015127)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24700
fragaria_vesca FvH4_5g06310
malus_domestica MD06G1165700.v1.1 MD14G1171300.v1.1
prunus_persica Prupe.5G165400_v2.0.a1
pyrus_communis pycom06g14820
rosa_chinensis RchiOBHm_Chr7g0192551
rosa_laevigata RLG00000004353
rosa_multiflora Rmu_sc0003108.1_g000040
rosa_roxburghii Rroxscaffold_3G00262940
rosa_rugosa Rorug07G0002100
rosa_samantha Rh7AG126600 Rh7BG128800 Rh7CG130600 Rh7DG130100
rosa_wichuraiana Rw7G010880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 126
Acc65I GGTACC 1 cut(s) 203
AccB1I GGYRCC 1 cut(s) 203
AcsI RAATTY 1 cut(s) 104
AcuI CTGAAG 1 cut(s) 171
AfaI GTAC 1 cut(s) 205
AfiI CCNNNNNNNGG 1 cut(s) 120
AgsI TTSAA 4 cut(s) 41, 154, 161, 387
AjnI CCWGG 1 cut(s) 65
AloI GAACNNNNNNTCC 2 cut(s) 27, 59
AluBI AGCT 4 cut(s) 157, 191, 304, 366
AluI AGCT 4 cut(s) 157, 191, 304, 366
AlwNI CAGNNNCTG 1 cut(s) 235
AoxI GGCC 1 cut(s) 92
ApeKI GCWGC 2 cut(s) 84, 176
ApoI RAATTY 1 cut(s) 104
Asp718I GGTACC 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 93
AsuC2I CCSGG 1 cut(s) 148
AsuHPI GGTGA 1 cut(s) 311
AxyI CCTNAGG 1 cut(s) 359
BaeI ACNNNNGTAYC 2 cut(s) 187, 220
BanI GGYRCC 1 cut(s) 203
BbsI GAAGAC 1 cut(s) 375
BbvI GCAGC 2 cut(s) 96, 188
BccI CCATC 3 cut(s) 290, 302, 336
BcgI CGANNNNNNTGC 2 cut(s) 92, 126
BciT130I CCWGG 1 cut(s) 67
BcnI CCSGG 1 cut(s) 148
BfaI CTAG 3 cut(s) 90, 192, 305
BfuAI ACCTGC 1 cut(s) 126
BglI GCCNNNNNGGC 1 cut(s) 81
BisI GCNGC 2 cut(s) 85, 177
BlsI GCNGC 2 cut(s) 86, 178
Bme1390I CCNGG 2 cut(s) 67, 148
BmgT120I GGNCC 1 cut(s) 93
BmiI GGNNCC 1 cut(s) 205
BmrFI CCNGG 2 cut(s) 67, 148
BmsI GCATC 4 cut(s) 100, 188, 232, 412
BpiI GAAGAC 1 cut(s) 375
BpuEI CTTGAG 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 148
Bsc4I CCNNNNNNNGG 1 cut(s) 120
Bse21I CCTNAGG 1 cut(s) 359
Bse3DI GCAATG 1 cut(s) 171
BseBI CCWGG 1 cut(s) 67
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 1 cut(s) 120
BseMI GCAATG 1 cut(s) 171
BseMII CTCAG 2 cut(s) 373, 390
BseXI GCAGC 2 cut(s) 96, 188
BshFI GGCC 1 cut(s) 94
BshNI GGYRCC 1 cut(s) 203
BsiSI CCGG 2 cut(s) 81, 148
BslFI GGGAC 2 cut(s) 130, 233
BslI CCNNNNNNNGG 1 cut(s) 120
BsmFI GGGAC 2 cut(s) 130, 233
BsnI GGCC 1 cut(s) 94
BspANI GGCC 1 cut(s) 94
BspCNI CTCAG 2 cut(s) 372, 391
BspLI GGNNCC 1 cut(s) 205
BspMI ACCTGC 1 cut(s) 126
BspT107I GGYRCC 1 cut(s) 203
BsrDI GCAATG 1 cut(s) 171
Bst2UI CCWGG 1 cut(s) 67
Bst4CI ACNGT 2 cut(s) 144, 237
BstDEI CTNAG 2 cut(s) 359, 399
BstEII GGTNACC 1 cut(s) 138
BstF5I GGATG 1 cut(s) 247
BstMWI GCNNNNNNNGC 2 cut(s) 81, 363
BstNI CCWGG 1 cut(s) 67
BstPI GGTNACC 1 cut(s) 138
BstSCI CCNGG 2 cut(s) 65, 146
BstV1I GCAGC 2 cut(s) 96, 188
BstV2I GAAGAC 1 cut(s) 375
Bsu36I CCTNAGG 1 cut(s) 359
BsuRI GGCC 1 cut(s) 94
BtsCI GGATG 1 cut(s) 247
BtsI GCAGTG 1 cut(s) 267
BtsIMutI CAGTG 3 cut(s) 233, 267, 417
BveI ACCTGC 1 cut(s) 126
CaiI CAGNNNCTG 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 93
Csp6I GTAC 1 cut(s) 204
CviAII CATG 3 cut(s) 20, 26, 97
CviQI GTAC 1 cut(s) 204
DdeI CTNAG 2 cut(s) 359, 399
Eco57I CTGAAG 1 cut(s) 171
Eco81I CCTNAGG 1 cut(s) 359
Eco91I GGTNACC 1 cut(s) 138
EcoO65I GGTNACC 1 cut(s) 138
EcoRII CCWGG 1 cut(s) 65
FaeI CATG 3 cut(s) 23, 29, 100
FaiI YATR 6 cut(s) 21, 27, 98, 249, 396, 410
FaqI GGGAC 2 cut(s) 130, 233
FatI CATG 3 cut(s) 19, 25, 96
Fnu4HI GCNGC 2 cut(s) 85, 177
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 2 cut(s) 85, 177
FspBI CTAG 3 cut(s) 90, 192, 305
GluI GCNGC 2 cut(s) 85, 177
HaeIII GGCC 1 cut(s) 94
HapII CCGG 2 cut(s) 81, 148
Hin1II CATG 3 cut(s) 23, 29, 100
HindIII AAGCTT 1 cut(s) 155
HinfI GANTC 2 cut(s) 278, 324
HpaII CCGG 2 cut(s) 81, 148
HphI GGTGA 1 cut(s) 311
Hpy188I TCNGA 3 cut(s) 103, 120, 333
Hpy188III TCNNGA 1 cut(s) 361
Hpy99I CGWCG 1 cut(s) 120
HpyCH4III ACNGT 2 cut(s) 144, 237
HpyCH4V TGCA 2 cut(s) 212, 260
HpyF10VI GCNNNNNNNGC 2 cut(s) 81, 363
HpyF3I CTNAG 2 cut(s) 359, 399
Hsp92II CATG 3 cut(s) 23, 29, 100
KpnI GGTACC 1 cut(s) 207
LmnI GCTCC 1 cut(s) 363
LpnPI CCDG 8 cut(s) 52, 79, 94, 121, 161, 184, 267, 346
Lsp1109I GCAGC 2 cut(s) 96, 188
LweI GCATC 4 cut(s) 100, 188, 232, 412
MaeI CTAG 3 cut(s) 90, 192, 305
MaeIII GTNAC 4 cut(s) 12, 138, 194, 231
MboII GAAGA 4 cut(s) 16, 177, 306, 375
MluCI AATT 2 cut(s) 104, 291
MlyI GAGTC 2 cut(s) 287, 333
MmeI TCCRAC 1 cut(s) 98
MnlI CCTC 5 cut(s) 56, 114, 327, 368, 394
MseI TTAA 1 cut(s) 430
MslI CAYNNNNRTG 2 cut(s) 24, 420
MspI CCGG 2 cut(s) 81, 148
MspR9I CCNGG 2 cut(s) 67, 148
MvaI CCWGG 1 cut(s) 67
MwoI GCNNNNNNNGC 2 cut(s) 81, 363
NciI CCSGG 1 cut(s) 148
NlaIII CATG 3 cut(s) 23, 29, 100
NlaIV GGNNCC 1 cut(s) 205
NmuCI GTSAC 2 cut(s) 194, 231
PkrI GCNGC 2 cut(s) 86, 178
PleI GAGTC 2 cut(s) 286, 332
PpsI GAGTC 2 cut(s) 286, 332
Psp6I CCWGG 1 cut(s) 65
PspEI GGTNACC 1 cut(s) 138
PspGI CCWGG 1 cut(s) 65
PspN4I GGNNCC 1 cut(s) 205
PspPI GGNCC 1 cut(s) 93
PstNI CAGNNNCTG 1 cut(s) 235
RsaI GTAC 1 cut(s) 205
RsaNI GTAC 1 cut(s) 204
RseI CAYNNNNRTG 2 cut(s) 24, 420
SaqAI TTAA 1 cut(s) 430
SatI GCNGC 2 cut(s) 85, 177
Sau96I GGNCC 1 cut(s) 93
SchI GAGTC 2 cut(s) 287, 333
ScrFI CCNGG 2 cut(s) 67, 148
SetI ASST 6 cut(s) 140, 159, 193, 275, 306, 368
SfaNI GCATC 4 cut(s) 100, 188, 232, 412
SmiMI CAYNNNNRTG 2 cut(s) 24, 420
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 2 cut(s) 104, 291
SspMI CTAG 3 cut(s) 90, 192, 305
StyD4I CCNGG 2 cut(s) 65, 146
TaaI ACNGT 2 cut(s) 144, 237
TasI AATT 2 cut(s) 104, 291
Tru1I TTAA 1 cut(s) 430
Tru9I TTAA 1 cut(s) 430
TscAI CASTG 3 cut(s) 240, 267, 424
TseFI GTSAC 2 cut(s) 194, 231
TseI GCWGC 2 cut(s) 84, 176
Tsp45I GTSAC 2 cut(s) 194, 231
TspDTI ATGAA 2 cut(s) 17, 42
TspRI CASTG 3 cut(s) 240, 267, 424
XapI RAATTY 1 cut(s) 104
XspI CTAG 3 cut(s) 90, 192, 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.