Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016645

Physical Location & Seq

Genomic Coordinates Reverse (-)

12821178 .. 12822497

Gene Structure 1320 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G24930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAGTTTGGTCGCCAGTTTGCAACTCATCCTCCCGCCACGGCCGAGAAGCACCAAGTTGTTGTGCTCATTGCAAAGCCCAAAACAAGAACAAGAACTCTCTTCTACTTCTCCTCCAATCTCTCTTTTACCAAAACTAATCTCTTTTGCTCTTGCTATCTCTCTAACTTCCTTTTCCCCTGCCTTAGCCATTCCTTCTCTCTCCTCTTCTCAGCCACTCACCACTCCTTTCACCCAATCCAAGTTCGTCCAGACCGGTCTTCTCAATGGCAAAATTAGGCCTTGCCCTTCCACGAACCCAGGATGTGTATCGACGAATCCAACCTCATCTTCCTTCTCTTTTCCATTGACGATCCCAGAAACCGATACACAGGATCCCATTGAGAAACTGAAAGAAGCAATAATGAGCACCCAGAAGAACCCCAAGTTTGTGGTTCTTGAAGATACTCCCTATGGGAGGTATGTGGAGGCAGAGGTAGAAGGAGGAGGATTTAGCAGAGATGTGATGGAGTTTTTGGTGAAGCAAGATGTGGTTGCTTACAGGTGTATGGCCACTAAGGTTACCTTTGTGTATCCTTTCACCACTGCTTTTGGAGACTCCAAGGGACAAGAAGAGAGGTTGAAGAAGCTCATCGATCAGCTTGGTTGGTATGCTCCTACCTTTGAATCTATGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0009579 GO:0031977 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044436 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

225

Amino Acids

24.7

Weight (kDa)

6.39

Isoelectric Point (pI)

55.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24930
fragaria_vesca	FvH4_5g08420
malus_domestica	MD06G1140800.v1.1
prunus_persica	Prupe.5G150000_v2.0.a1
pyrus_communis	pycom06g13070
rosa_chinensis	RchiOBHm_Chr7g0190021
rosa_laevigata	RLG00000004571
rosa_roxburghii	Rroxscaffold_3G00264950
rosa_rugosa	Rorug06G0501700
rosa_samantha	Rh7AG107200 Rh7BG109500 Rh7CG111800 Rh7DG110200
rosa_wichuraiana	Rw7G009250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	35
AclWI	GGATC	3 cut(s)	346, 368, 381
AcoI	YGGCCR	2 cut(s)	41, 549
AfiI	CCNNNNNNNGG	1 cut(s)	456
AgeI	ACCGGT	1 cut(s)	254
AgsI	TTSAA	3 cut(s)	440, 622, 665
AjnI	CCWGG	1 cut(s)	298
AjuI	GAANNNNNNNTTGG	2 cut(s)	313, 345
AluBI	AGCT	2 cut(s)	628, 640
AluI	AGCT	2 cut(s)	628, 640
Alw21I	GWGCWC	2 cut(s)	68, 410
Alw26I	GTCTC	1 cut(s)	588
AlwI	GGATC	3 cut(s)	346, 368, 381
AoxI	GGCC	3 cut(s)	41, 278, 549
AsiGI	ACCGGT	1 cut(s)	254
AsuHPI	GGTGA	4 cut(s)	211, 223, 529, 571
BalI	TGGCCA	1 cut(s)	551
BamHI	GGATCC	1 cut(s)	373
BbsI	GAAGAC	1 cut(s)	251
Bbv12I	GWGCWC	2 cut(s)	68, 410
BccI	CCATC	1 cut(s)	499
BceAI	ACGGC	1 cut(s)	56
BciT130I	CCWGG	1 cut(s)	300
BciVI	GTATCC	1 cut(s)	582
BcoDI	GTCTC	1 cut(s)	588
BfuI	GTATCC	1 cut(s)	582
Bme1390I	CCNGG	1 cut(s)	300
BmiI	GGNNCC	1 cut(s)	375
BmrFI	CCNGG	1 cut(s)	300
BpiI	GAAGAC	1 cut(s)	251
Bpu10I	CCTNAGC	1 cut(s)	184
Bsa29I	ATCGAT	1 cut(s)	633
BsaBI	GATNNNNATC	1 cut(s)	307
BsaJI	CCNNGG	3 cut(s)	38, 298, 600
BsaWI	WCCGGW	1 cut(s)	254
BsaXI	ACNNNNNCTCC	4 cut(s)	15, 45, 97, 127
Bsc4I	CCNNNNNNNGG	1 cut(s)	456
Bse118I	RCCGGY	1 cut(s)	254
Bse1I	ACTGG	1 cut(s)	15
Bse3DI	GCAATG	1 cut(s)	68
Bse8I	GATNNNNATC	1 cut(s)	307
BseBI	CCWGG	1 cut(s)	300
BseCI	ATCGAT	1 cut(s)	633
BseDI	CCNNGG	3 cut(s)	38, 298, 600
BseGI	GGATG	2 cut(s)	27, 308
BseJI	GATNNNNATC	1 cut(s)	307
BseLI	CCNNNNNNNGG	1 cut(s)	456
BseMI	GCAATG	1 cut(s)	68
BseMII	CTCAG	1 cut(s)	224
BseNI	ACTGG	1 cut(s)	15
BseRI	GAGGAG	3 cut(s)	102, 193, 498
BseX3I	CGGCCG	1 cut(s)	41
Bsh1285I	CGRYCG	1 cut(s)	44
BshFI	GGCC	3 cut(s)	43, 280, 551
BshTI	ACCGGT	1 cut(s)	254
BshVI	ATCGAT	1 cut(s)	633
BsiEI	CGRYCG	1 cut(s)	44
BsiHKAI	GWGCWC	2 cut(s)	68, 410
BsiSI	CCGG	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	618
BslI	CCNNNNNNNGG	1 cut(s)	456
BsmAI	GTCTC	1 cut(s)	588
BsmFI	GGGAC	1 cut(s)	618
BsnI	GGCC	3 cut(s)	43, 280, 551
Bsp1286I	GDGCHC	2 cut(s)	68, 410
Bsp143I	GATC	3 cut(s)	351, 373, 634
BspACI	CCGC	1 cut(s)	35
BspANI	GGCC	3 cut(s)	43, 280, 551
BspCNI	CTCAG	1 cut(s)	223
BspDI	ATCGAT	1 cut(s)	633
BspLI	GGNNCC	1 cut(s)	375
BspPI	GGATC	3 cut(s)	346, 368, 381
BsrDI	GCAATG	1 cut(s)	68
BsrFI	RCCGGY	1 cut(s)	254
BsrI	ACTGG	1 cut(s)	15
BssAI	RCCGGY	1 cut(s)	254
BssECI	CCNNGG	3 cut(s)	38, 298, 600
BssMI	GATC	3 cut(s)	351, 373, 634
BssT1I	CCWWGG	1 cut(s)	600
Bst2UI	CCWGG	1 cut(s)	300
Bst6I	CTCTTC	3 cut(s)	106, 211, 606
BstDEI	CTNAG	3 cut(s)	184, 210, 555
BstDSI	CCRYGG	1 cut(s)	38
BstEII	GGTNACC	1 cut(s)	559
BstENI	CCTNNNNNAGG	1 cut(s)	454
BstF5I	GGATG	2 cut(s)	27, 308
BstKTI	GATC	3 cut(s)	354, 376, 637
BstMAI	GTCTC	1 cut(s)	588
BstMBI	GATC	3 cut(s)	351, 373, 634
BstMCI	CGRYCG	1 cut(s)	44
BstNI	CCWGG	1 cut(s)	300
BstPI	GGTNACC	1 cut(s)	559
BstSCI	CCNGG	1 cut(s)	298
BstV2I	GAAGAC	1 cut(s)	251
BstX2I	RGATCY	1 cut(s)	373
BstXI	CCANNNNNNTGG	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	373
BstZI	CGGCCG	1 cut(s)	41
Bsu15I	ATCGAT	1 cut(s)	633
BsuI	GTATCC	1 cut(s)	582
BsuRI	GGCC	3 cut(s)	43, 280, 551
BsuTUI	ATCGAT	1 cut(s)	633
BtgI	CCRYGG	1 cut(s)	38
BtsCI	GGATG	2 cut(s)	27, 308
BtsI	GCAGTG	1 cut(s)	582
BtsIMutI	CAGTG	1 cut(s)	582
Cfr10I	RCCGGY	1 cut(s)	254
ClaI	ATCGAT	1 cut(s)	633
CspAI	ACCGGT	1 cut(s)	254
CspCI	CAANNNNNGTGG	2 cut(s)	571, 606
CviJI	RGCY	8 cut(s)	43, 78, 188, 214, 280, 551, 628, 640
CviKI_1	RGCY	8 cut(s)	43, 78, 188, 214, 280, 551, 628, 640
DdeI	CTNAG	3 cut(s)	184, 210, 555
DpnI	GATC	3 cut(s)	353, 375, 636
DpnII	GATC	3 cut(s)	351, 373, 634
EaeI	YGGCCR	2 cut(s)	41, 549
EagI	CGGCCG	1 cut(s)	41
Eam1104I	CTCTTC	3 cut(s)	106, 211, 606
EarI	CTCTTC	3 cut(s)	106, 211, 606
EclXI	CGGCCG	1 cut(s)	41
Eco130I	CCWWGG	1 cut(s)	600
Eco147I	AGGCCT	1 cut(s)	280
Eco52I	CGGCCG	1 cut(s)	41
Eco91I	GGTNACC	1 cut(s)	559
EcoNI	CCTNNNNNAGG	1 cut(s)	454
EcoO65I	GGTNACC	1 cut(s)	559
EcoRII	CCWGG	1 cut(s)	298
EcoT14I	CCWWGG	1 cut(s)	600
ErhI	CCWWGG	1 cut(s)	600
FaiI	YATR	5 cut(s)	453, 462, 548, 651, 671
FalI	AAGNNNNNCTT	2 cut(s)	548, 580
FaqI	GGGAC	1 cut(s)	618
FauI	CCCGC	1 cut(s)	42
FokI	GGATG	2 cut(s)	14, 315
HaeIII	GGCC	3 cut(s)	43, 280, 551
HapII	CCGG	1 cut(s)	255
HinfI	GANTC	3 cut(s)	316, 596, 665
HpaII	CCGG	1 cut(s)	255
HphI	GGTGA	4 cut(s)	211, 223, 529, 571
Hpy188III	TCNNGA	2 cut(s)	250, 437
Hpy99I	CGWCG	1 cut(s)	316
HpyAV	CCTTC	4 cut(s)	204, 297, 343, 473
HpyCH4V	TGCA	2 cut(s)	22, 73
HpyF3I	CTNAG	3 cut(s)	184, 210, 555
Kzo9I	GATC	3 cut(s)	351, 373, 634
LmnI	GCTCC	1 cut(s)	658
MaeIII	GTNAC	1 cut(s)	559
MalI	GATC	3 cut(s)	353, 375, 636
MboI	GATC	3 cut(s)	351, 373, 634
MboII	GAAGA	8 cut(s)	93, 198, 251, 321, 427, 452, 623, 634
MflI	RGATCY	1 cut(s)	373
MhlI	GDGCHC	2 cut(s)	68, 410
MlsI	TGGCCA	1 cut(s)	551
MluCI	AATT	1 cut(s)	273
MluNI	TGGCCA	1 cut(s)	551
MlyI	GAGTC	1 cut(s)	590
MmeI	TCCRAC	1 cut(s)	344
Mox20I	TGGCCA	1 cut(s)	551
MscI	TGGCCA	1 cut(s)	551
Msp20I	TGGCCA	1 cut(s)	551
MspI	CCGG	1 cut(s)	255
MspR9I	CCNGG	1 cut(s)	300
MvaI	CCWGG	1 cut(s)	300
NdeII	GATC	3 cut(s)	351, 373, 634
NlaIV	GGNNCC	1 cut(s)	375
NmeAIII	GCCGAG	1 cut(s)	69
PceI	AGGCCT	1 cut(s)	280
PfeI	GAWTC	2 cut(s)	316, 665
PinAI	ACCGGT	1 cut(s)	254
PleI	GAGTC	1 cut(s)	590
PpsI	GAGTC	1 cut(s)	590
Psp6I	CCWGG	1 cut(s)	298
PspEI	GGTNACC	1 cut(s)	559
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	1 cut(s)	375
PsuI	RGATCY	1 cut(s)	373
Sau3AI	GATC	3 cut(s)	351, 373, 634
SchI	GAGTC	1 cut(s)	590
ScrFI	CCNGG	1 cut(s)	300
SduI	GDGCHC	2 cut(s)	68, 410
Sse9I	AATT	1 cut(s)	273
SseBI	AGGCCT	1 cut(s)	280
SsiI	CCGC	1 cut(s)	35
StuI	AGGCCT	1 cut(s)	280
StyD4I	CCNGG	1 cut(s)	298
StyI	CCWWGG	1 cut(s)	600
TaqI	TCGA	2 cut(s)	311, 633
TasI	AATT	1 cut(s)	273
TfiI	GAWTC	2 cut(s)	316, 665
TscAI	CASTG	1 cut(s)	589
TspRI	CASTG	1 cut(s)	589
XagI	CCTNNNNNAGG	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.