Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0016645

Physical Location & Seq

Genomic Coordinates Forward (+)

8722342 .. 8723975

Gene Structure 1634 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G009250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGAGTTTGATGGGTCATCTTCTACCTCCAACTTCCAAGCCCTCGTTCACCGTAACCTCTCATTTCCTTCAAAACCCACAACCCACTCTGCAAAATTCAACCCATAAACCCATAATTGTACCCGCTCTCCTTTCCTTGGCTCTCGGTGTAACACTCACCTCTCCTTTACCTGCTTTAGCAATCCCTTCTCTCAATTCACAGACCAATCTAGCCCCTCCCACCACTCCATTCTCTCAATCCAAGACTCTCCAGACTGGGCTCGAAAATGGAAAAATAAGACCTTGTCCATCAATTAATCCGGCATGTATATCAACAAATCCGAGATCATCATCGTTTGCGTTTCCATTGACGATTCCTGAAAAATCTTCCGGCAATGCAATTCAGAAGTTGCAAGAAGCAATCTTGGAAACTCAAAAGAATCCGAAAATTAAGATTTTGGAAGACACCCCAGATGGCCAATATTTACAAGCTGAGGTTGATGGAGGGTTTGGCAGAGATGTGCTGGAGTTTCTGGTGAAAGGAGACTTGGTTTCTTACAGGTGTATGGCCACAAAAGTAACCTATTTGTATCCTTTCACTACTGCTCTAGGGAACTCAAAGGGTCAAGAAGAAAGAATGAAGAAAATTACTGACCAGTTGGGGTGGTATGCTCCAAGTTTTGAAGCTGAAGCAATCGATGAGAATGAAGCCATGGACATGTCCCGGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0009579 GO:0031977 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044436 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

236

Amino Acids

25.69

Weight (kDa)

6.31

Isoelectric Point (pI)

48.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0016645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24930
fragaria_vesca	FvH4_5g08420
malus_domestica	MD06G1140800.v1.1
prunus_persica	Prupe.5G150000_v2.0.a1
pyrus_communis	pycom06g13070
rosa_chinensis	RchiOBHm_Chr7g0190021
rosa_laevigata	RLG00000004571
rosa_roxburghii	Rroxscaffold_3G00264950
rosa_rugosa	Rorug06G0501700
rosa_samantha	Rh7AG107200 Rh7BG109500 Rh7CG111800 Rh7DG110200
rosa_wichuraiana	Rw7G009250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	178
AccBSI	CCGCTC	1 cut(s)	125
AciI	CCGC	1 cut(s)	123
AcoI	YGGCCR	2 cut(s)	454, 546
AcsI	RAATTY	1 cut(s)	94
AcuI	CTGAAG	1 cut(s)	687
AfaI	GTAC	1 cut(s)	120
AfiI	CCNNNNNNNGG	1 cut(s)	136
AflIII	ACRYGT	1 cut(s)	696
AgsI	TTSAA	3 cut(s)	71, 99, 662
AjuI	GAANNNNNNNTTGG	4 cut(s)	29, 61, 509, 541
AluBI	AGCT	2 cut(s)	470, 665
AluI	AGCT	2 cut(s)	470, 665
Alw26I	GTCTC	1 cut(s)	516
AoxI	GGCC	2 cut(s)	454, 546
ApoI	RAATTY	1 cut(s)	94
AseI	ATTAAT	1 cut(s)	294
AsuC2I	CCSGG	1 cut(s)	703
AsuHPI	GGTGA	3 cut(s)	40, 148, 526
BalI	TGGCCA	2 cut(s)	456, 548
BanII	GRGCYC	1 cut(s)	261
BbsI	GAAGAC	1 cut(s)	447
BbvCI	CCTCAGC	1 cut(s)	471
BccI	CCATC	4 cut(s)	4, 295, 446, 473
BciVI	GTATCC	1 cut(s)	579
BcnI	CCSGG	1 cut(s)	703
BcoDI	GTCTC	1 cut(s)	516
BfaI	CTAG	2 cut(s)	209, 587
BfuAI	ACCTGC	1 cut(s)	178
BfuI	GTATCC	1 cut(s)	579
Bme1390I	CCNGG	1 cut(s)	703
BmrFI	CCNGG	1 cut(s)	703
BmrI	ACTGGG	1 cut(s)	264
BmuI	ACTGGG	1 cut(s)	264
BpiI	GAAGAC	1 cut(s)	447
BpmI	CTGGAG	2 cut(s)	233, 524
Bpu10I	CCTNAGC	1 cut(s)	471
BpuMI	CCSGG	1 cut(s)	703
Bsa29I	ATCGAT	1 cut(s)	675
BsaBI	GATNNNNATC	1 cut(s)	328
BsaJI	CCNNGG	2 cut(s)	135, 690
BsaXI	ACNNNNNCTCC	4 cut(s)	111, 141, 513, 543
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse1I	ACTGG	2 cut(s)	259, 634
Bse3DI	GCAATG	1 cut(s)	379
Bse8I	GATNNNNATC	1 cut(s)	328
BseCI	ATCGAT	1 cut(s)	675
BseDI	CCNNGG	2 cut(s)	135, 690
BseJI	GATNNNNATC	1 cut(s)	328
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMI	GCAATG	1 cut(s)	379
BseMII	CTCAG	1 cut(s)	462
BseNI	ACTGG	2 cut(s)	259, 634
BshFI	GGCC	2 cut(s)	456, 548
BshVI	ATCGAT	1 cut(s)	675
BsiSI	CCGG	3 cut(s)	299, 369, 703
BslFI	GGGAC	1 cut(s)	685
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmAI	GTCTC	1 cut(s)	516
BsmFI	GGGAC	1 cut(s)	685
BsnI	GGCC	2 cut(s)	456, 548
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp143I	GATC	1 cut(s)	323
Bsp19I	CCATGG	1 cut(s)	690
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	2 cut(s)	456, 548
BspCNI	CTCAG	1 cut(s)	463
BspDI	ATCGAT	1 cut(s)	675
BspMI	ACCTGC	1 cut(s)	178
BsrBI	CCGCTC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	379
BsrI	ACTGG	2 cut(s)	259, 634
BssECI	CCNNGG	2 cut(s)	135, 690
BssMI	GATC	1 cut(s)	323
BssT1I	CCWWGG	2 cut(s)	135, 690
Bst4CI	ACNGT	1 cut(s)	52
BstDEI	CTNAG	1 cut(s)	471
BstDSI	CCRYGG	1 cut(s)	690
BstKTI	GATC	1 cut(s)	326
BstMAI	GTCTC	1 cut(s)	516
BstMBI	GATC	1 cut(s)	323
BstNSI	RCATGY	2 cut(s)	306, 700
BstSCI	CCNGG	1 cut(s)	701
BstV2I	GAAGAC	1 cut(s)	447
Bsu15I	ATCGAT	1 cut(s)	675
BsuI	GTATCC	1 cut(s)	579
BsuRI	GGCC	2 cut(s)	456, 548
BsuTUI	ATCGAT	1 cut(s)	675
BtgI	CCRYGG	1 cut(s)	690
BveI	ACCTGC	1 cut(s)	178
ClaI	ATCGAT	1 cut(s)	675
Csp6I	GTAC	1 cut(s)	119
CviAII	CATG	3 cut(s)	303, 691, 697
CviJI	RGCY	9 cut(s)	40, 140, 212, 259, 456, 470, 548, 665, 689
CviKI_1	RGCY	9 cut(s)	40, 140, 212, 259, 456, 470, 548, 665, 689
CviQI	GTAC	1 cut(s)	119
DdeI	CTNAG	1 cut(s)	471
DpnI	GATC	1 cut(s)	325
DpnII	GATC	1 cut(s)	323
EaeI	YGGCCR	2 cut(s)	454, 546
Eco130I	CCWWGG	2 cut(s)	135, 690
Eco24I	GRGCYC	1 cut(s)	261
Eco57I	CTGAAG	1 cut(s)	687
EcoT14I	CCWWGG	2 cut(s)	135, 690
EcoT38I	GRGCYC	1 cut(s)	261
ErhI	CCWWGG	2 cut(s)	135, 690
FaeI	CATG	3 cut(s)	306, 694, 700
FaiI	YATR	8 cut(s)	105, 113, 304, 308, 545, 648, 692, 698
FaqI	GGGAC	1 cut(s)	685
FatI	CATG	3 cut(s)	302, 690, 696
FauI	CCCGC	1 cut(s)	130
FriOI	GRGCYC	1 cut(s)	261
FspBI	CTAG	2 cut(s)	209, 587
GsuI	CTGGAG	2 cut(s)	233, 524
HaeIII	GGCC	2 cut(s)	456, 548
HapII	CCGG	3 cut(s)	299, 369, 703
Hin1II	CATG	3 cut(s)	306, 694, 700
HinfI	GANTC	3 cut(s)	244, 352, 418
HpaII	CCGG	3 cut(s)	299, 369, 703
HphI	GGTGA	3 cut(s)	40, 148, 526
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	3 cut(s)	321, 384, 423
Hpy188III	TCNNGA	3 cut(s)	250, 356, 605
Hpy8I	GTNNAC	1 cut(s)	48
HpyAV	CCTTC	2 cut(s)	77, 195
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4V	TGCA	3 cut(s)	91, 377, 391
HpyF3I	CTNAG	1 cut(s)	471
Hsp92II	CATG	3 cut(s)	306, 694, 700
Kzo9I	GATC	1 cut(s)	323
LmnI	GCTCC	1 cut(s)	655
MaeI	CTAG	2 cut(s)	209, 587
MaeIII	GTNAC	3 cut(s)	52, 148, 556
MalI	GATC	1 cut(s)	325
MbiI	CCGCTC	1 cut(s)	125
MboI	GATC	1 cut(s)	323
MboII	GAAGA	5 cut(s)	11, 357, 452, 620, 631
MhlI	GDGCHC	1 cut(s)	261
MlsI	TGGCCA	2 cut(s)	456, 548
MluCI	AATT	8 cut(s)	94, 114, 193, 291, 378, 426, 624, 706
MluNI	TGGCCA	2 cut(s)	456, 548
MlyI	GAGTC	1 cut(s)	238
MmeI	TCCRAC	1 cut(s)	53
MnlI	CCTC	7 cut(s)	36, 52, 67, 169, 225, 466, 476
Mox20I	TGGCCA	2 cut(s)	456, 548
MscI	TGGCCA	2 cut(s)	456, 548
MseI	TTAA	2 cut(s)	294, 429
MslI	CAYNNNNRTG	1 cut(s)	695
Msp20I	TGGCCA	2 cut(s)	456, 548
MspI	CCGG	3 cut(s)	299, 369, 703
MspR9I	CCNGG	1 cut(s)	703
NciI	CCSGG	1 cut(s)	703
NcoI	CCATGG	1 cut(s)	690
NdeII	GATC	1 cut(s)	323
NlaIII	CATG	3 cut(s)	306, 694, 700
NspI	RCATGY	2 cut(s)	306, 700
PciI	ACATGT	1 cut(s)	696
PfeI	GAWTC	2 cut(s)	352, 418
PflFI	GACNNNGTC	1 cut(s)	282
PfoI	TCCNGGA	1 cut(s)	701
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
PscI	ACATGT	1 cut(s)	696
PshBI	ATTAAT	1 cut(s)	294
PsyI	GACNNNGTC	1 cut(s)	282
RsaI	GTAC	1 cut(s)	120
RsaNI	GTAC	1 cut(s)	119
RseI	CAYNNNNRTG	1 cut(s)	695
SaqAI	TTAA	2 cut(s)	294, 429
Sau3AI	GATC	1 cut(s)	323
SchI	GAGTC	1 cut(s)	238
ScrFI	CCNGG	1 cut(s)	703
SduI	GDGCHC	1 cut(s)	261
SmiMI	CAYNNNNRTG	1 cut(s)	695
Sse9I	AATT	8 cut(s)	94, 114, 193, 291, 378, 426, 624, 706
SsiI	CCGC	1 cut(s)	123
SspI	AATATT	1 cut(s)	461
SspMI	CTAG	2 cut(s)	209, 587
StyD4I	CCNGG	1 cut(s)	701
StyI	CCWWGG	2 cut(s)	135, 690
TaaI	ACNGT	1 cut(s)	52
TaqI	TCGA	2 cut(s)	261, 675
TasI	AATT	8 cut(s)	94, 114, 193, 291, 378, 426, 624, 706
TfiI	GAWTC	2 cut(s)	352, 418
Tru1I	TTAA	2 cut(s)	294, 429
Tru9I	TTAA	2 cut(s)	294, 429
TspDTI	ATGAA	2 cut(s)	632, 699
Tth111I	GACNNNGTC	1 cut(s)	282
VspI	ATTAAT	1 cut(s)	294
XapI	RAATTY	1 cut(s)	94
XceI	RCATGY	2 cut(s)	306, 700
XspI	CTAG	2 cut(s)	209, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.