FvH4_5g08420

Thylakoid lumenal 17.9 kDa protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
4885740 .. 4888248
2509 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g08420.t1

Sequence Viewer

Length: 867 bp
ATGTCGTTTAATCAAATTTGCATATATGTGGCTGTTATACAATTTTCAATTTTGGAGGCAAAACACTGCGTTTTAATCCGAGGGAAAAAGAAGCAGGAGAGAAACAGAGCGCATGGAAGTGAAAGGTTGAGACTTGAGACAAGGATAAACCAAAACATGAGCTTGATGGGTCATCTTCTACCTCCAACTTCCAAGCCCTCATTCTCTGTATCCTCTCATTTGCTTAAAAACCCACAACCCACTCTGCACAATTTAACCCCTAGACCCATAATTGTACCAGCTCTACTTTCCTTTGCGCTCAGTGTTACACTCACCTCTCCTTTACCTGTTTTGGCTATCCCTTCTCTCAATTCCCAGACCAATCTAGCCCCTCCCACCACCCCATTCTCTCAGTCCAAGACTCTGCAGGTTGGCCTCGAAAATGGAAAAATCAGACCTTGTCCTTCAATTAATCCGGGATGCATATCAACAAATCCGAGATCATCATCGTTTGCGTTTCCGTTGACGATTCCTGAAAAATCTACAGACAATGCTATTCAGAAGTTGCAAGAAGCAATCTTGGAAACTCAAAAGAATCCGAAAATTAAGATCTTGAAGGACACCCCAGATGGCCAATATTTACAAGCTGAGGTTGATGGAGGGTTTGGCCGAGATGTGCTGGAGTTTCTGGTGAAAGGAGACTTGGTTTCTTACAGGTGTATGGCCACAAAAGTATTCTATTTGTATCCTTTCACTACTGCTTTAGGGAATTCAAATGGACAAGAAGAAAGACTGAAAAAAATTACTGACCAGTTGGGTTGGTATGCTCCAAGTTTTGAAGCTGAAGCGATCGACGAGAATGAAGCCATGGACATGTCCCAGAATTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

289

Amino Acids

31.91

Weight (kDa)

8.9

Isoelectric Point (pI)

41.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016645)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24930
fragaria_vesca FvH4_5g08420
malus_domestica MD06G1140800.v1.1
prunus_persica Prupe.5G150000_v2.0.a1
pyrus_communis pycom06g13070
rosa_chinensis RchiOBHm_Chr7g0190021
rosa_laevigata RLG00000004571
rosa_roxburghii Rroxscaffold_3G00264950
rosa_rugosa Rorug06G0501700
rosa_samantha Rh7AG107200 Rh7BG109500 Rh7CG111800 Rh7DG110200
rosa_wichuraiana Rw7G009250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 397
AcoI YGGCCR 3 cut(s) 610, 646, 702
AcsI RAATTY 2 cut(s) 15, 748
AcuI CTGAAG 1 cut(s) 843
AfaI GTAC 1 cut(s) 276
AflIII ACRYGT 1 cut(s) 852
AgsI TTSAA 5 cut(s) 48, 447, 595, 753, 818
AjuI GAANNNNNNNTTGG 4 cut(s) 185, 217, 665, 697
AluBI AGCT 4 cut(s) 162, 281, 626, 821
AluI AGCT 4 cut(s) 162, 281, 626, 821
Alw26I GTCTC 3 cut(s) 124, 131, 672
AoxI GGCC 4 cut(s) 412, 610, 646, 702
ApoI RAATTY 2 cut(s) 15, 748
AseI ATTAAT 1 cut(s) 450
AspLEI GCGC 2 cut(s) 112, 298
AsuC2I CCSGG 1 cut(s) 456
AsuHPI GGTGA 2 cut(s) 304, 682
BalI TGGCCA 2 cut(s) 612, 704
BbvCI CCTCAGC 1 cut(s) 627
BccI CCATC 3 cut(s) 160, 602, 629
BciVI GTATCC 2 cut(s) 220, 735
BcnI CCSGG 1 cut(s) 456
BcoDI GTCTC 3 cut(s) 124, 131, 672
BfaI CTAG 2 cut(s) 261, 365
BfmI CTRYAG 2 cut(s) 404, 522
BfuAI ACCTGC 1 cut(s) 397
BfuI GTATCC 2 cut(s) 220, 735
BglII AGATCT 1 cut(s) 588
Bme1390I CCNGG 1 cut(s) 456
BmrFI CCNGG 1 cut(s) 456
BmsI GCATC 1 cut(s) 449
BpmI CTGGAG 1 cut(s) 680
Bpu10I CCTNAGC 1 cut(s) 627
BpuEI CTTGAG 1 cut(s) 155
BpuMI CCSGG 1 cut(s) 456
BsaBI GATNNNNATC 2 cut(s) 463, 484
BsaJI CCNNGG 2 cut(s) 79, 846
BsaXI ACNNNNNCTCC 2 cut(s) 669, 699
Bse1I ACTGG 1 cut(s) 790
Bse8I GATNNNNATC 2 cut(s) 463, 484
BseDI CCNNGG 2 cut(s) 79, 846
BseGI GGATG 1 cut(s) 464
BseJI GATNNNNATC 2 cut(s) 463, 484
BseMII CTCAG 3 cut(s) 313, 404, 618
BseNI ACTGG 1 cut(s) 790
BsgI GTGCAG 1 cut(s) 230
Bsh1285I CGRYCG 1 cut(s) 831
BshFI GGCC 4 cut(s) 414, 612, 648, 704
BsiEI CGRYCG 1 cut(s) 831
BsiSI CCGG 1 cut(s) 455
BslFI GGGAC 1 cut(s) 841
BsmAI GTCTC 3 cut(s) 124, 131, 672
BsmFI GGGAC 1 cut(s) 841
BsnI GGCC 4 cut(s) 414, 612, 648, 704
Bsp143I GATC 3 cut(s) 479, 588, 828
Bsp19I CCATGG 1 cut(s) 846
BspANI GGCC 4 cut(s) 414, 612, 648, 704
BspCNI CTCAG 3 cut(s) 312, 403, 619
BspMAI CTGCAG 1 cut(s) 408
BspMI ACCTGC 1 cut(s) 397
BsrI ACTGG 1 cut(s) 790
BssECI CCNNGG 2 cut(s) 79, 846
BssMI GATC 3 cut(s) 479, 588, 828
BssT1I CCWWGG 1 cut(s) 846
BstDEI CTNAG 3 cut(s) 299, 390, 627
BstDSI CCRYGG 1 cut(s) 846
BstF5I GGATG 1 cut(s) 464
BstHHI GCGC 2 cut(s) 112, 298
BstKTI GATC 3 cut(s) 482, 591, 831
BstMAI GTCTC 3 cut(s) 124, 131, 672
BstMBI GATC 3 cut(s) 479, 588, 828
BstMCI CGRYCG 1 cut(s) 831
BstNSI RCATGY 1 cut(s) 856
BstSCI CCNGG 1 cut(s) 454
BstSFI CTRYAG 2 cut(s) 404, 522
BstX2I RGATCY 1 cut(s) 588
BstYI RGATCY 1 cut(s) 588
BsuI GTATCC 2 cut(s) 220, 735
BsuRI GGCC 4 cut(s) 414, 612, 648, 704
BtgI CCRYGG 1 cut(s) 846
BtsCI GGATG 1 cut(s) 464
BtsI GCAGTG 1 cut(s) 64
BtsIMutI CAGTG 2 cut(s) 64, 307
BveI ACCTGC 1 cut(s) 397
CfoI GCGC 2 cut(s) 112, 298
Csp6I GTAC 1 cut(s) 275
CviAII CATG 4 cut(s) 113, 157, 847, 853
CviQI GTAC 1 cut(s) 275
DdeI CTNAG 3 cut(s) 299, 390, 627
DpnI GATC 3 cut(s) 481, 590, 830
DpnII GATC 3 cut(s) 479, 588, 828
EaeI YGGCCR 3 cut(s) 610, 646, 702
Eco130I CCWWGG 1 cut(s) 846
Eco57I CTGAAG 1 cut(s) 843
EcoRI GAATTC 1 cut(s) 748
EcoT14I CCWWGG 1 cut(s) 846
EcoT22I ATGCAT 1 cut(s) 464
ErhI CCWWGG 1 cut(s) 846
FaeI CATG 4 cut(s) 116, 160, 850, 856
FaqI GGGAC 1 cut(s) 841
FatI CATG 4 cut(s) 112, 156, 846, 852
FokI GGATG 1 cut(s) 471
FspBI CTAG 2 cut(s) 261, 365
GlaI GCGC 2 cut(s) 111, 297
GsuI CTGGAG 1 cut(s) 680
HaeIII GGCC 4 cut(s) 414, 612, 648, 704
HapII CCGG 1 cut(s) 455
HhaI GCGC 2 cut(s) 112, 298
Hin1II CATG 4 cut(s) 116, 160, 850, 856
Hin6I GCGC 2 cut(s) 110, 296
HinP1I GCGC 2 cut(s) 110, 296
HincII GTYRAC 1 cut(s) 504
HindII GTYRAC 1 cut(s) 504
HinfI GANTC 3 cut(s) 400, 508, 574
HpaII CCGG 1 cut(s) 455
HphI GGTGA 2 cut(s) 304, 682
Hpy166II GTNNAC 1 cut(s) 504
Hpy188I TCNGA 5 cut(s) 80, 434, 477, 540, 579
Hpy188III TCNNGA 2 cut(s) 512, 592
Hpy8I GTNNAC 1 cut(s) 504
Hpy99I CGWCG 1 cut(s) 836
HpyAV CCTTC 3 cut(s) 351, 453, 589
HpyCH4V TGCA 5 cut(s) 21, 247, 406, 462, 547
HpyF3I CTNAG 3 cut(s) 299, 390, 627
Hsp92II CATG 4 cut(s) 116, 160, 850, 856
HspAI GCGC 2 cut(s) 110, 296
Kzo9I GATC 3 cut(s) 479, 588, 828
LmnI GCTCC 1 cut(s) 811
LweI GCATC 1 cut(s) 449
MaeI CTAG 2 cut(s) 261, 365
MaeIII GTNAC 1 cut(s) 304
MalI GATC 3 cut(s) 481, 590, 830
MboI GATC 3 cut(s) 479, 588, 828
MboII GAAGA 2 cut(s) 167, 776
MflI RGATCY 1 cut(s) 588
MlsI TGGCCA 2 cut(s) 612, 704
MluNI TGGCCA 2 cut(s) 612, 704
MlyI GAGTC 1 cut(s) 394
MmeI TCCRAC 1 cut(s) 209
Mox20I TGGCCA 2 cut(s) 612, 704
Mph1103I ATGCAT 1 cut(s) 464
MscI TGGCCA 2 cut(s) 612, 704
MseI TTAA 6 cut(s) 9, 74, 225, 254, 450, 585
MslI CAYNNNNRTG 3 cut(s) 26, 117, 851
Msp20I TGGCCA 2 cut(s) 612, 704
MspI CCGG 1 cut(s) 455
MspR9I CCNGG 1 cut(s) 456
NciI CCSGG 1 cut(s) 456
NcoI CCATGG 1 cut(s) 846
NdeII GATC 3 cut(s) 479, 588, 828
NlaIII CATG 4 cut(s) 116, 160, 850, 856
NmeAIII GCCGAG 1 cut(s) 674
NsiI ATGCAT 1 cut(s) 464
NspI RCATGY 1 cut(s) 856
PciI ACATGT 1 cut(s) 852
PfeI GAWTC 2 cut(s) 508, 574
PflFI GACNNNGTC 1 cut(s) 438
PfoI TCCNGGA 1 cut(s) 454
Ple19I CGATCG 1 cut(s) 831
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
PscI ACATGT 1 cut(s) 852
PshBI ATTAAT 1 cut(s) 450
PstI CTGCAG 1 cut(s) 408
PsuI RGATCY 1 cut(s) 588
PsyI GACNNNGTC 1 cut(s) 438
PvuI CGATCG 1 cut(s) 831
RsaI GTAC 1 cut(s) 276
RsaNI GTAC 1 cut(s) 275
RseI CAYNNNNRTG 3 cut(s) 26, 117, 851
SaqAI TTAA 6 cut(s) 9, 74, 225, 254, 450, 585
Sau3AI GATC 3 cut(s) 479, 588, 828
SchI GAGTC 1 cut(s) 394
ScrFI CCNGG 1 cut(s) 456
SfaNI GCATC 1 cut(s) 449
SfcI CTRYAG 2 cut(s) 404, 522
SmiMI CAYNNNNRTG 3 cut(s) 26, 117, 851
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
SspI AATATT 1 cut(s) 617
SspMI CTAG 2 cut(s) 261, 365
StyD4I CCNGG 1 cut(s) 454
StyI CCWWGG 1 cut(s) 846
TaqI TCGA 2 cut(s) 417, 831
TfiI GAWTC 2 cut(s) 508, 574
Tru1I TTAA 6 cut(s) 9, 74, 225, 254, 450, 585
Tru9I TTAA 6 cut(s) 9, 74, 225, 254, 450, 585
TscAI CASTG 2 cut(s) 71, 307
TspDTI ATGAA 1 cut(s) 855
TspGWI ACGGA 1 cut(s) 489
TspRI CASTG 2 cut(s) 71, 307
Tth111I GACNNNGTC 1 cut(s) 438
VspI ATTAAT 1 cut(s) 450
XapI RAATTY 2 cut(s) 15, 748
XceI RCATGY 1 cut(s) 856
XspI CTAG 2 cut(s) 261, 365
Zsp2I ATGCAT 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.