pycom06g13070

Thylakoid lumenal 17.9 kDa protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
18145697 .. 18147187
1491 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g13070.2

Sequence Viewer

Length: 699 bp
ATGACCAACATGAGCTTCAATTTGATGGGTCATCATCTTCTTCCTCCAACTTCCAATCACTCAATCCCCACAACCTCTCCTTGCCTCCAAAACCCGAAATCCAGTTTGCAGAACTCGACCCGAAAGCCGATAATCCTCCCTAGTCTCCTCTCTCTAGCTCTCACTGTCACACTTGGCTCACCTTTACCTGTTTTGGCAATCCCTTCTCTCAACTCTCAGTCCAATTTAGCCCCTCCTCCTCCCACCACTCCATTCTCTCAGGCCAAGAATTTGAAGACTGGCCTTGAATTCGGGAAAATTAGACCTTGCCCATCGATAAATCCTGGCTGTGTGTCGACAAATCCAAGATCGTCATCGTTTGCATTTCCATTGGAGATTCCTGCAAATTCTTTAGACAATGCAATTCAGAGGTTGAAAGAAGCAATCTTAGAAACCCAAAAGAACCCAAAAATTCAGATCGTGGAAGATACCCCTGATGGGCAATATTTACAAGCCGAGTTCGATGGAGGTTTTGGCAGAGATGTGGTGGAGTTTCTGGTGAAAGGAGACTTGGCTTCGTACAGGTGCATGGCCACAAAAGTAACATATTTGTACCCTTTCACAACAGCTCTAGGAAATTCACAGGGACAAGAAGAGCGGATGAAGAAAATTACTGACCAGTTGGGTTGGTATGCTCCAAGTTTTGAAGCCATGGACTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

25.27

Weight (kDa)

7.66

Isoelectric Point (pI)

45.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016645)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24930
fragaria_vesca FvH4_5g08420
malus_domestica MD06G1140800.v1.1
prunus_persica Prupe.5G150000_v2.0.a1
pyrus_communis pycom06g13070
rosa_chinensis RchiOBHm_Chr7g0190021
rosa_laevigata RLG00000004571
rosa_roxburghii Rroxscaffold_3G00264950
rosa_rugosa Rorug06G0501700
rosa_samantha Rh7AG107200 Rh7BG109500 Rh7CG111800 Rh7DG110200
rosa_wichuraiana Rw7G009250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 637
AccI GTMKAC 1 cut(s) 335
AciI CCGC 1 cut(s) 637
AcoI YGGCCR 1 cut(s) 570
AcsI RAATTY 5 cut(s) 268, 287, 385, 450, 616
AfaI GTAC 2 cut(s) 560, 593
AfiI CCNNNNNNNGG 1 cut(s) 477
AgsI TTSAA 5 cut(s) 19, 274, 287, 415, 686
AjnI CCWGG 1 cut(s) 322
AjuI GAANNNNNNNTTGG 3 cut(s) 31, 533, 565
AluBI AGCT 3 cut(s) 15, 158, 608
AluI AGCT 3 cut(s) 15, 158, 608
Alw26I GTCTC 2 cut(s) 149, 540
AoxI GGCC 3 cut(s) 261, 280, 570
ApoI RAATTY 5 cut(s) 268, 287, 385, 450, 616
AsuHPI GGTGA 2 cut(s) 171, 550
BalI TGGCCA 1 cut(s) 572
BbsI GAAGAC 1 cut(s) 281
BccI CCATC 4 cut(s) 19, 319, 470, 497
BciT130I CCWGG 1 cut(s) 324
BcoDI GTCTC 2 cut(s) 149, 540
BfaI CTAG 3 cut(s) 141, 155, 611
Bme1390I CCNGG 1 cut(s) 324
BmrFI CCNGG 1 cut(s) 324
BpiI GAAGAC 1 cut(s) 281
Bsa29I ATCGAT 1 cut(s) 314
BsaBI GATNNNNATC 1 cut(s) 352
BsaJI CCNNGG 1 cut(s) 690
BsaXI ACNNNNNCTCC 2 cut(s) 61, 91
Bsc4I CCNNNNNNNGG 1 cut(s) 477
Bse1I ACTGG 3 cut(s) 102, 283, 658
Bse8I GATNNNNATC 1 cut(s) 352
BseBI CCWGG 1 cut(s) 324
BseCI ATCGAT 1 cut(s) 314
BseDI CCNNGG 1 cut(s) 690
BseGI GGATG 1 cut(s) 645
BseJI GATNNNNATC 1 cut(s) 352
BseLI CCNNNNNNNGG 1 cut(s) 477
BseMII CTCAG 2 cut(s) 230, 272
BseNI ACTGG 3 cut(s) 102, 283, 658
BseRI GAGGAG 3 cut(s) 137, 225, 228
BshFI GGCC 3 cut(s) 263, 282, 572
BshVI ATCGAT 1 cut(s) 314
BslFI GGGAC 1 cut(s) 639
BslI CCNNNNNNNGG 1 cut(s) 477
BsmAI GTCTC 2 cut(s) 149, 540
BsmFI GGGAC 1 cut(s) 639
BsnI GGCC 3 cut(s) 263, 282, 572
Bsp143I GATC 2 cut(s) 347, 456
Bsp19I CCATGG 1 cut(s) 690
BspACI CCGC 1 cut(s) 637
BspANI GGCC 3 cut(s) 263, 282, 572
BspCNI CTCAG 2 cut(s) 229, 271
BspDI ATCGAT 1 cut(s) 314
BspQI GCTCTTC 1 cut(s) 627
BsrBI CCGCTC 1 cut(s) 637
BsrI ACTGG 3 cut(s) 102, 283, 658
BssECI CCNNGG 1 cut(s) 690
BssMI GATC 2 cut(s) 347, 456
BssT1I CCWWGG 1 cut(s) 690
Bst2UI CCWGG 1 cut(s) 324
Bst4CI ACNGT 1 cut(s) 166
Bst6I CTCTTC 1 cut(s) 627
BstDEI CTNAG 3 cut(s) 216, 258, 427
BstDSI CCRYGG 1 cut(s) 690
BstF5I GGATG 1 cut(s) 645
BstKTI GATC 2 cut(s) 350, 459
BstMAI GTCTC 2 cut(s) 149, 540
BstMBI GATC 2 cut(s) 347, 456
BstNI CCWGG 1 cut(s) 324
BstSCI CCNGG 1 cut(s) 322
BstV2I GAAGAC 1 cut(s) 281
Bsu15I ATCGAT 1 cut(s) 314
BsuRI GGCC 3 cut(s) 263, 282, 572
BsuTUI ATCGAT 1 cut(s) 314
BtgI CCRYGG 1 cut(s) 690
BtsCI GGATG 1 cut(s) 645
BtsIMutI CAGTG 1 cut(s) 162
ClaI ATCGAT 1 cut(s) 314
Csp6I GTAC 2 cut(s) 559, 592
CviAII CATG 3 cut(s) 10, 568, 691
CviQI GTAC 2 cut(s) 559, 592
DdeI CTNAG 3 cut(s) 216, 258, 427
DpnI GATC 2 cut(s) 349, 458
DpnII GATC 2 cut(s) 347, 456
EaeI YGGCCR 1 cut(s) 570
Eam1104I CTCTTC 1 cut(s) 627
EarI CTCTTC 1 cut(s) 627
Eco130I CCWWGG 1 cut(s) 690
EcoRI GAATTC 1 cut(s) 287
EcoRII CCWGG 1 cut(s) 322
EcoT14I CCWWGG 1 cut(s) 690
ErhI CCWWGG 1 cut(s) 690
FaeI CATG 3 cut(s) 13, 571, 694
FaiI YATR 5 cut(s) 11, 569, 586, 672, 692
FaqI GGGAC 1 cut(s) 639
FatI CATG 3 cut(s) 9, 567, 690
FblI GTMKAC 1 cut(s) 335
FokI GGATG 1 cut(s) 652
FspBI CTAG 3 cut(s) 141, 155, 611
HaeIII GGCC 3 cut(s) 263, 282, 572
Hin1II CATG 3 cut(s) 13, 571, 694
HincII GTYRAC 1 cut(s) 336
HindII GTYRAC 1 cut(s) 336
HinfI GANTC 1 cut(s) 376
HphI GGTGA 2 cut(s) 171, 550
Hpy166II GTNNAC 1 cut(s) 336
Hpy188I TCNGA 2 cut(s) 408, 456
Hpy188III TCNNGA 1 cut(s) 292
Hpy8I GTNNAC 1 cut(s) 336
HpyAV CCTTC 1 cut(s) 213
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4V TGCA 5 cut(s) 109, 362, 383, 401, 567
HpyF3I CTNAG 3 cut(s) 216, 258, 427
Hsp92II CATG 3 cut(s) 13, 571, 694
Kzo9I GATC 2 cut(s) 347, 456
LguI GCTCTTC 1 cut(s) 627
LmnI GCTCC 1 cut(s) 679
MaeI CTAG 3 cut(s) 141, 155, 611
MaeIII GTNAC 2 cut(s) 166, 580
MalI GATC 2 cut(s) 349, 458
MbiI CCGCTC 1 cut(s) 637
MboI GATC 2 cut(s) 347, 456
MboII GAAGA 6 cut(s) 29, 32, 286, 476, 644, 655
MlsI TGGCCA 1 cut(s) 572
MluNI TGGCCA 1 cut(s) 572
MmeI TCCRAC 1 cut(s) 71
Mox20I TGGCCA 1 cut(s) 572
MscI TGGCCA 1 cut(s) 572
Msp20I TGGCCA 1 cut(s) 572
MspR9I CCNGG 1 cut(s) 324
MvaI CCWGG 1 cut(s) 324
NcoI CCATGG 1 cut(s) 690
NdeII GATC 2 cut(s) 347, 456
NlaIII CATG 3 cut(s) 13, 571, 694
NmeAIII GCCGAG 1 cut(s) 520
NmuCI GTSAC 1 cut(s) 166
PciSI GCTCTTC 1 cut(s) 627
PfeI GAWTC 1 cut(s) 376
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
RsaI GTAC 2 cut(s) 560, 593
RsaNI GTAC 2 cut(s) 559, 592
SalI GTCGAC 1 cut(s) 334
SapI GCTCTTC 1 cut(s) 627
Sau3AI GATC 2 cut(s) 347, 456
ScrFI CCNGG 1 cut(s) 324
SsiI CCGC 1 cut(s) 637
SspI AATATT 1 cut(s) 485
SspMI CTAG 3 cut(s) 141, 155, 611
StyD4I CCNGG 1 cut(s) 322
StyI CCWWGG 1 cut(s) 690
TaaI ACNGT 1 cut(s) 166
TaqI TCGA 4 cut(s) 116, 314, 335, 501
TfiI GAWTC 1 cut(s) 376
TscAI CASTG 1 cut(s) 169
TseFI GTSAC 1 cut(s) 166
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 1 cut(s) 656
TspRI CASTG 1 cut(s) 169
XapI RAATTY 5 cut(s) 268, 287, 385, 450, 616
XmiI GTMKAC 1 cut(s) 335
XspI CTAG 3 cut(s) 141, 155, 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.