Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012748

Physical Location & Seq

Genomic Coordinates Forward (+)

12870006 .. 12871564

Gene Structure 1559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G25050.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCTTCCTTATCAACCACTTCCCTAAGCTTCAAAGCTCCGTCCACCACAATTTCACAGGTTTTAAGGAAAGCCTCAAGTTCTCAGTCTGTGACCTTTGGTCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCCGCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAATTGGCTTTAGCTGCTGATGTTCCGCTCACTGCTGAATCCAAGTTCTCTGCTCTTGGTGCCGATTCTCTCGACACCGTGGAGATAGTGATGGCGTTGGAGGAAAAGTTTAACATAAGTGTGGAGGAATCTGATGCTCAAAACATTACGACCATCCAAGAGGCGGCTGATTTGATAGAGGACCTTGTTCAAAAGAAACCCGCGGCGGAAACTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0032501 GO:0032502 GO:0032787 GO:0033218 GO:0036094 GO:0042335 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044620 GO:0045087 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0048856 GO:0050896 GO:0051192 GO:0051704 GO:0051707 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0098542 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP-binding

Protein Analysis

137

Amino Acids

14.54

Weight (kDa)

4.74

Isoelectric Point (pI)

51.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25050 AT4G25050
fragaria_vesca	FvH4_5g09190
malus_domestica	MD06G1132700.v1.1
prunus_persica	Prupe.5G143700_v2.0.a1 Prupe.5G144100_v2.0.a1
pyrus_communis	pycom06g12430 pycom14g12390
rosa_chinensis	RchiOBHm_Chr7g0188991
rosa_laevigata	RLG00000004645
rosa_multiflora	Rmu_ssc0000113.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265890
rosa_rugosa	Rorug06G0495300
rosa_samantha	Rh7AG099900 Rh7BG102100 Rh7CG103400 Rh7DG101900
rosa_wichuraiana	Rw7G008620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	254
AccBSI	CCGCTC	1 cut(s)	223
AccII	CGCG	2 cut(s)	152, 398
AciI	CCGC	6 cut(s)	150, 221, 359, 396, 398, 401
AfiI	CCNNNNNNNGG	1 cut(s)	358
AgsI	TTSAA	4 cut(s)	34, 117, 137, 386
AhdI	GACNNNNNGTC	1 cut(s)	99
AjiI	CACGTC	1 cut(s)	111
AluBI	AGCT	3 cut(s)	30, 38, 209
AluI	AGCT	3 cut(s)	30, 38, 209
Alw26I	GTCTC	1 cut(s)	155
ApeKI	GCWGC	1 cut(s)	209
AspS9I	GGNCC	1 cut(s)	376
AvaII	GGWCC	1 cut(s)	376
BanI	GGYRCC	1 cut(s)	254
BbsI	GAAGAC	2 cut(s)	105, 125
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	2 cut(s)	280, 356
BcoDI	GTCTC	1 cut(s)	155
BisI	GCNGC	4 cut(s)	150, 210, 360, 399
BlsI	GCNGC	4 cut(s)	151, 211, 361, 400
Bme18I	GGWCC	1 cut(s)	376
BmeRI	GACNNNNNGTC	1 cut(s)	99
BmgBI	CACGTC	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	376
BmiI	GGNNCC	1 cut(s)	256
BmsI	GCATC	1 cut(s)	319
BpiI	GAAGAC	2 cut(s)	105, 125
Bpu10I	CCTNAGC	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	61
BsaJI	CCNNGG	2 cut(s)	273, 396
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
BseDI	CCNNGG	2 cut(s)	273, 396
BseGI	GGATG	1 cut(s)	348
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMII	CTCAG	1 cut(s)	98
BseXI	GCAGC	1 cut(s)	196
BsgI	GTGCAG	1 cut(s)	188
Bsh1236I	CGCG	2 cut(s)	152, 398
BshNI	GGYRCC	1 cut(s)	254
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmAI	GTCTC	1 cut(s)	155
BsmBI	CGTCTC	1 cut(s)	155
BspACI	CCGC	6 cut(s)	150, 221, 359, 396, 398, 401
BspCNI	CTCAG	1 cut(s)	97
BspFNI	CGCG	2 cut(s)	152, 398
BspLI	GGNNCC	1 cut(s)	256
BspT107I	GGYRCC	1 cut(s)	254
BsrBI	CCGCTC	1 cut(s)	223
BssECI	CCNNGG	2 cut(s)	273, 396
Bst4CI	ACNGT	2 cut(s)	166, 274
BstDEI	CTNAG	2 cut(s)	26, 84
BstDSI	CCRYGG	2 cut(s)	273, 396
BstF5I	GGATG	1 cut(s)	348
BstFNI	CGCG	2 cut(s)	152, 398
BstMAI	GTCTC	1 cut(s)	155
BstMWI	GCNNNNNNNGC	3 cut(s)	155, 209, 254
BstUI	CGCG	2 cut(s)	152, 398
BstV1I	GCAGC	1 cut(s)	196
BstV2I	GAAGAC	2 cut(s)	105, 125
BtgI	CCRYGG	2 cut(s)	273, 396
BtrI	CACGTC	1 cut(s)	111
BtsCI	GGATG	1 cut(s)	348
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	225
Cfr13I	GGNCC	1 cut(s)	376
Cfr42I	CCGCGG	1 cut(s)	399
CviJI	RGCY	8 cut(s)	5, 30, 38, 74, 126, 203, 209, 362
CviKI_1	RGCY	8 cut(s)	5, 30, 38, 74, 126, 203, 209, 362
DdeI	CTNAG	2 cut(s)	26, 84
DriI	GACNNNNNGTC	1 cut(s)	99
Eam1105I	GACNNNNNGTC	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	376
EcoO109I	RGGNCCY	1 cut(s)	376
Esp3I	CGTCTC	1 cut(s)	155
FaiI	YATR	1 cut(s)	311
FauI	CCCGC	1 cut(s)	403
Fnu4HI	GCNGC	4 cut(s)	150, 210, 360, 399
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	4 cut(s)	150, 210, 360, 399
GluI	GCNGC	4 cut(s)	150, 210, 360, 399
HindIII	AAGCTT	1 cut(s)	28
HinfI	GANTC	3 cut(s)	233, 260, 323
Hpy166II	GTNNAC	1 cut(s)	45
Hpy188I	TCNGA	1 cut(s)	328
Hpy188III	TCNNGA	2 cut(s)	266, 411
Hpy8I	GTNNAC	1 cut(s)	45
HpyAV	CCTTC	1 cut(s)	137
HpyCH4III	ACNGT	2 cut(s)	166, 274
HpyCH4IV	ACGT	1 cut(s)	110
HpyCH4V	TGCA	1 cut(s)	169
HpyF10VI	GCNNNNNNNGC	3 cut(s)	155, 209, 254
HpyF3I	CTNAG	2 cut(s)	26, 84
HpySE526I	ACGT	1 cut(s)	110
KspI	CCGCGG	1 cut(s)	399
LmnI	GCTCC	1 cut(s)	43
LpnPI	CCDG	1 cut(s)	44
Lsp1109I	GCAGC	1 cut(s)	196
LweI	GCATC	1 cut(s)	319
MaeII	ACGT	1 cut(s)	110
MaeIII	GTNAC	2 cut(s)	91, 179
MbiI	CCGCTC	1 cut(s)	223
MboII	GAAGA	2 cut(s)	105, 125
MfeI	CAATTG	1 cut(s)	197
MluCI	AATT	2 cut(s)	51, 197
MmeI	TCCRAC	1 cut(s)	273
MnlI	CCTC	5 cut(s)	85, 289, 313, 349, 367
MseI	TTAA	2 cut(s)	65, 306
MslI	CAYNNNNRTG	1 cut(s)	314
MspA1I	CMGCKG	1 cut(s)	398
MunI	CAATTG	1 cut(s)	197
MvnI	CGCG	2 cut(s)	152, 398
MwoI	GCNNNNNNNGC	3 cut(s)	155, 209, 254
NlaIV	GGNNCC	1 cut(s)	256
NmuCI	GTSAC	2 cut(s)	91, 179
PfeI	GAWTC	3 cut(s)	233, 260, 323
PkrI	GCNGC	4 cut(s)	151, 211, 361, 400
PpuMI	RGGWCCY	1 cut(s)	376
Psp5II	RGGWCCY	1 cut(s)	376
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	1 cut(s)	376
PspPPI	RGGWCCY	1 cut(s)	376
RseI	CAYNNNNRTG	1 cut(s)	314
SacII	CCGCGG	1 cut(s)	399
SaqAI	TTAA	2 cut(s)	65, 306
SatI	GCNGC	4 cut(s)	150, 210, 360, 399
Sau96I	GGNCC	1 cut(s)	376
SetI	ASST	7 cut(s)	32, 40, 63, 98, 113, 211, 381
SfaNI	GCATC	1 cut(s)	319
Sfr303I	CCGCGG	1 cut(s)	399
SgrBI	CCGCGG	1 cut(s)	399
SinI	GGWCC	1 cut(s)	376
SmiMI	CAYNNNNRTG	1 cut(s)	314
SmlI	CTYRAG	1 cut(s)	76
SmoI	CTYRAG	1 cut(s)	76
Sse9I	AATT	2 cut(s)	51, 197
SsiI	CCGC	6 cut(s)	150, 221, 359, 396, 398, 401
TaaI	ACNGT	2 cut(s)	166, 274
TaiI	ACGT	1 cut(s)	113
TaqI	TCGA	1 cut(s)	267
TasI	AATT	2 cut(s)	51, 197
TauI	GCSGC	3 cut(s)	152, 362, 401
TfiI	GAWTC	3 cut(s)	233, 260, 323
Tru1I	TTAA	2 cut(s)	65, 306
Tru9I	TTAA	2 cut(s)	65, 306
TscAI	CASTG	1 cut(s)	232
TseFI	GTSAC	2 cut(s)	91, 179
TseI	GCWGC	1 cut(s)	209
Tsp45I	GTSAC	2 cut(s)	91, 179
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.