Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0012748

Physical Location & Seq

Genomic Coordinates Reverse (-)

17553801 .. 17555069

Gene Structure 1269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g12430.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCTTCTGCTTCAGCAACTTCTCTCTGCAGGTTCCAAACCTTTCAAAACCAGCCAATCAAGACCTGCCAGGTAACAAAAACAAGTTCAAGTTTAAAGTTGGTTTCTAATGGATGGGCCAAGAGTGGCTTCTCTTCTTTGAGGATCTCTCGTCTCCAAATTTGTTGCGTCGCCAAACCGGAGACAGTGCAAAAGGTAGTGGAGATTGTGAGGAAGCAATTGGCTTTGCCTCCGGAGTCAGAGGTTTCCCCTGACTCCAAGTTTGCATTACTTGGTGCCGACTCTCTTGACACCGTGGAGATAGTGATGAATTTGGAGGAAGAGTTTGACATTAGTGTTGAAGAGGAGAGCTCTCAGAACATAAGCACGGTCCAAGAAGCAGCTGATTTGATAGAGAAGCTCATTGAAAAGAAATCAGCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0032501 GO:0032502 GO:0032787 GO:0033218 GO:0036094 GO:0042335 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044620 GO:0045087 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0048856 GO:0050896 GO:0051192 GO:0051704 GO:0051707 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0098542 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP-binding

Protein Analysis

142

Amino Acids

15.38

Weight (kDa)

4.94

Isoelectric Point (pI)

53.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25050 AT4G25050
fragaria_vesca	FvH4_5g09190
malus_domestica	MD06G1132700.v1.1
prunus_persica	Prupe.5G143700_v2.0.a1 Prupe.5G144100_v2.0.a1
pyrus_communis	pycom06g12430 pycom14g12390
rosa_chinensis	RchiOBHm_Chr7g0188991
rosa_laevigata	RLG00000004645
rosa_multiflora	Rmu_ssc0000113.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265890
rosa_rugosa	Rorug06G0495300
rosa_samantha	Rh7AG099900 Rh7BG102100 Rh7CG103400 Rh7DG101900
rosa_wichuraiana	Rw7G008620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	21, 74
AccB1I	GGYRCC	1 cut(s)	275
AccIII	TCCGGA	1 cut(s)	232
AclWI	GGATC	1 cut(s)	152
AcsI	RAATTY	2 cut(s)	159, 310
AgsI	TTSAA	4 cut(s)	47, 90, 341, 407
AjnI	CCWGG	1 cut(s)	69
AjuI	GAANNNNNNNTTGG	2 cut(s)	113, 145
AluBI	AGCT	4 cut(s)	351, 383, 400, 419
AluI	AGCT	4 cut(s)	351, 383, 400, 419
Alw21I	GWGCWC	1 cut(s)	353
Alw26I	GTCTC	2 cut(s)	158, 176
AlwI	GGATC	1 cut(s)	152
Aor13HI	TCCGGA	1 cut(s)	232
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	2 cut(s)	380, 419
ApoI	RAATTY	2 cut(s)	159, 310
ArsI	GACNNNNNNTTYG	2 cut(s)	245, 277
AspS9I	GGNCC	2 cut(s)	117, 370
AvaII	GGWCC	1 cut(s)	370
BanI	GGYRCC	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	353
Bbv12I	GWGCWC	1 cut(s)	353
BbvI	GCAGC	2 cut(s)	392, 406
BccI	CCATC	1 cut(s)	108
BciT130I	CCWGG	1 cut(s)	71
BcoDI	GTCTC	2 cut(s)	158, 176
BfmI	CTRYAG	1 cut(s)	28
BfuAI	ACCTGC	2 cut(s)	21, 74
BisI	GCNGC	2 cut(s)	381, 420
BlsI	GCNGC	2 cut(s)	382, 421
Bme1390I	CCNGG	1 cut(s)	71
Bme18I	GGWCC	1 cut(s)	370
BmgT120I	GGNCC	2 cut(s)	117, 370
BmiI	GGNNCC	2 cut(s)	35, 277
BmrFI	CCNGG	1 cut(s)	71
BplI	GAGNNNNNCTC	4 cut(s)	133, 165, 335, 367
BsaJI	CCNNGG	1 cut(s)	294
BsaWI	WCCGGW	2 cut(s)	178, 232
BsaXI	ACNNNNNCTCC	2 cut(s)	308, 338
BseAI	TCCGGA	1 cut(s)	232
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	1 cut(s)	294
BseGI	GGATG	1 cut(s)	119
BseMII	CTCAG	1 cut(s)	368
BseRI	GAGGAG	1 cut(s)	359
BseXI	GCAGC	2 cut(s)	392, 406
BshFI	GGCC	1 cut(s)	119
BshNI	GGYRCC	1 cut(s)	275
BsiHKAI	GWGCWC	1 cut(s)	353
BsiSI	CCGG	2 cut(s)	179, 233
BsmAI	GTCTC	2 cut(s)	158, 176
BsmBI	CGTCTC	1 cut(s)	158
BsnI	GGCC	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp13I	TCCGGA	1 cut(s)	232
Bsp143I	GATC	1 cut(s)	144
BspANI	GGCC	1 cut(s)	119
BspCNI	CTCAG	1 cut(s)	367
BspEI	TCCGGA	1 cut(s)	232
BspLI	GGNNCC	2 cut(s)	35, 277
BspMAI	CTGCAG	1 cut(s)	32
BspMI	ACCTGC	2 cut(s)	21, 74
BspPI	GGATC	1 cut(s)	152
BspT107I	GGYRCC	1 cut(s)	275
BssECI	CCNNGG	1 cut(s)	294
BssMI	GATC	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	71
Bst4CI	ACNGT	3 cut(s)	187, 295, 370
Bst6I	CTCTTC	3 cut(s)	139, 315, 336
BstDEI	CTNAG	1 cut(s)	354
BstDSI	CCRYGG	1 cut(s)	294
BstF5I	GGATG	1 cut(s)	119
BstKTI	GATC	1 cut(s)	147
BstMAI	GTCTC	2 cut(s)	158, 176
BstMBI	GATC	1 cut(s)	144
BstNI	CCWGG	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	69
BstSFI	CTRYAG	1 cut(s)	28
BstV1I	GCAGC	2 cut(s)	392, 406
BstX2I	RGATCY	1 cut(s)	144
BstYI	RGATCY	1 cut(s)	144
BsuRI	GGCC	1 cut(s)	119
BtgI	CCRYGG	1 cut(s)	294
BtsCI	GGATG	1 cut(s)	119
BtsIMutI	CAGTG	1 cut(s)	192
BveI	ACCTGC	2 cut(s)	21, 74
Cfr13I	GGNCC	2 cut(s)	117, 370
CseI	GACGC	1 cut(s)	157
CviJI	RGCY	9 cut(s)	5, 55, 119, 129, 224, 351, 383, 400, 419
CviKI_1	RGCY	9 cut(s)	5, 55, 119, 129, 224, 351, 383, 400, 419
DdeI	CTNAG	1 cut(s)	354
DpnI	GATC	1 cut(s)	146
DpnII	GATC	1 cut(s)	144
DraI	TTTAAA	1 cut(s)	96
Eam1104I	CTCTTC	3 cut(s)	139, 315, 336
EarI	CTCTTC	3 cut(s)	139, 315, 336
Ecl136II	GAGCTC	1 cut(s)	351
Eco24I	GRGCYC	1 cut(s)	353
Eco47I	GGWCC	1 cut(s)	370
Eco53kI	GAGCTC	1 cut(s)	351
EcoICRI	GAGCTC	1 cut(s)	351
EcoRII	CCWGG	1 cut(s)	69
EcoT38I	GRGCYC	1 cut(s)	353
Esp3I	CGTCTC	1 cut(s)	158
FaiI	YATR	1 cut(s)	362
FalI	AAGNNNNNCTT	2 cut(s)	113, 145
Fnu4HI	GCNGC	2 cut(s)	381, 420
FokI	GGATG	1 cut(s)	126
FriOI	GRGCYC	1 cut(s)	353
Fsp4HI	GCNGC	2 cut(s)	381, 420
GluI	GCNGC	2 cut(s)	381, 420
HaeIII	GGCC	1 cut(s)	119
HapII	CCGG	2 cut(s)	179, 233
HgaI	GACGC	1 cut(s)	157
HinfI	GANTC	3 cut(s)	236, 254, 281
HpaII	CCGG	2 cut(s)	179, 233
Hpy188I	TCNGA	2 cut(s)	241, 357
Hpy188III	TCNNGA	3 cut(s)	61, 233, 287
Hpy99I	CGWCG	1 cut(s)	173
HpyCH4III	ACNGT	3 cut(s)	187, 295, 370
HpyCH4V	TGCA	3 cut(s)	30, 190, 266
HpyF3I	CTNAG	1 cut(s)	354
Kpn2I	TCCGGA	1 cut(s)	232
Kzo9I	GATC	1 cut(s)	144
LpnPI	CCDG	8 cut(s)	16, 56, 65, 79, 83, 192, 246, 264
Lsp1109I	GCAGC	2 cut(s)	392, 406
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	1 cut(s)	146
MboI	GATC	1 cut(s)	144
MboII	GAAGA	3 cut(s)	126, 332, 353
MfeI	CAATTG	1 cut(s)	218
MflI	RGATCY	1 cut(s)	144
MhlI	GDGCHC	1 cut(s)	353
MluCI	AATT	3 cut(s)	159, 218, 310
MlyI	GAGTC	3 cut(s)	245, 248, 275
MnlI	CCTC	6 cut(s)	135, 204, 235, 240, 310, 337
MroI	TCCGGA	1 cut(s)	232
MseI	TTAA	2 cut(s)	95, 424
MspA1I	CMGCKG	2 cut(s)	383, 419
MspI	CCGG	2 cut(s)	179, 233
MspR9I	CCNGG	1 cut(s)	71
MunI	CAATTG	1 cut(s)	218
MvaI	CCWGG	1 cut(s)	71
NdeII	GATC	1 cut(s)	144
NlaIV	GGNNCC	2 cut(s)	35, 277
PkrI	GCNGC	2 cut(s)	382, 421
PleI	GAGTC	3 cut(s)	244, 248, 275
PpsI	GAGTC	3 cut(s)	244, 248, 275
Psp124BI	GAGCTC	1 cut(s)	353
Psp6I	CCWGG	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	2 cut(s)	35, 277
PspPI	GGNCC	2 cut(s)	117, 370
PstI	CTGCAG	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	144
PvuII	CAGCTG	2 cut(s)	383, 419
SacI	GAGCTC	1 cut(s)	353
SaqAI	TTAA	2 cut(s)	95, 424
SatI	GCNGC	2 cut(s)	381, 420
Sau3AI	GATC	1 cut(s)	144
Sau96I	GGNCC	2 cut(s)	117, 370
SchI	GAGTC	3 cut(s)	245, 248, 275
ScrFI	CCNGG	1 cut(s)	71
SduI	GDGCHC	1 cut(s)	353
SfcI	CTRYAG	1 cut(s)	28
SinI	GGWCC	1 cut(s)	370
Sse9I	AATT	3 cut(s)	159, 218, 310
SstI	GAGCTC	1 cut(s)	353
StyD4I	CCNGG	1 cut(s)	69
TaaI	ACNGT	3 cut(s)	187, 295, 370
TasI	AATT	3 cut(s)	159, 218, 310
Tru1I	TTAA	2 cut(s)	95, 424
Tru9I	TTAA	2 cut(s)	95, 424
TscAI	CASTG	1 cut(s)	192
TseI	GCWGC	2 cut(s)	380, 419
TspDTI	ATGAA	1 cut(s)	323
TspRI	CASTG	1 cut(s)	192
VpaK11BI	GGWCC	1 cut(s)	370
XapI	RAATTY	2 cut(s)	159, 310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.