Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0012748

Physical Location & Seq

Genomic Coordinates Forward (+)

59271955 .. 59272832

Gene Structure 878 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00265890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCTTCTCTTTCAGCTACCAGTCTCTGCAGCTTCCAATCCTTGCAAAGCCAGCCAATCAAAACTAGCCAGGTAGCGAGGACAAATTTGGTATCTACTGGCTGGGGGAAGAGTGGCTTCACTTCTTTGAGAACTTCCCGTTTTCGCATCTGTTCCGCTGCTAAACCGGAGACTGTCCAAAAGGTGGTCGAGATTGTGAGGAAGCAACTGGCTTTGCCGGCAGAGTCCGAGGTCACCCCGGACTCCAAGTTCTCAACACTTGGTGCTGATTCTCTTGACACAGTGGAGATAGTGATGGGTTTGGAGGAAGAGTTTGACATCAACGTGGAAGAGGATAACTCTCAGAACATAACCACGGTTCAAGAAGCGGCTGATTTGATAGAGCAGCTTATTGAGAAGAAAACACAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0032501 GO:0032502 GO:0032787 GO:0033218 GO:0036094 GO:0042335 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044620 GO:0045087 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0048856 GO:0050896 GO:0051192 GO:0051704 GO:0051707 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0098542 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP-binding

Protein Analysis

137

Amino Acids

14.93

Weight (kDa)

4.68

Isoelectric Point (pI)

53.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP-binding	PF00550	60 - 127	5.6e-11	Phosphopantetheine attachment site
PP-binding_2	PF14573	76 - 127	2e-06	Acyl-carrier

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25050 AT4G25050
fragaria_vesca	FvH4_5g09190
malus_domestica	MD06G1132700.v1.1
prunus_persica	Prupe.5G143700_v2.0.a1 Prupe.5G144100_v2.0.a1
pyrus_communis	pycom06g12430 pycom14g12390
rosa_chinensis	RchiOBHm_Chr7g0188991
rosa_laevigata	RLG00000004645
rosa_multiflora	Rmu_ssc0000113.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265890
rosa_rugosa	Rorug06G0495300
rosa_samantha	Rh7AG099900 Rh7BG102100 Rh7CG103400 Rh7DG101900
rosa_wichuraiana	Rw7G008620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	184
AciI	CCGC	2 cut(s)	156, 368
AcsI	RAATTY	1 cut(s)	85
AdeI	CACNNNGTG	1 cut(s)	263
AfiI	CCNNNNNNNGG	1 cut(s)	184
AgsI	TTSAA	1 cut(s)	362
AjnI	CCWGG	1 cut(s)	69
AloI	GAACNNNNNNTCC	2 cut(s)	233, 265
AluBI	AGCT	3 cut(s)	17, 33, 388
AluI	AGCT	3 cut(s)	17, 33, 388
Alw26I	GTCTC	2 cut(s)	29, 164
AlwNI	CAGNNNCTG	1 cut(s)	27
ApeKI	GCWGC	3 cut(s)	30, 158, 385
ApoI	RAATTY	1 cut(s)	85
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	1 cut(s)	226
BbvI	GCAGC	3 cut(s)	42, 145, 397
BccI	CCATC	1 cut(s)	289
BciT130I	CCWGG	1 cut(s)	71
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	2 cut(s)	29, 164
BfaI	CTAG	1 cut(s)	66
BfmI	CTRYAG	1 cut(s)	28
BisI	GCNGC	4 cut(s)	31, 159, 369, 386
BlsI	GCNGC	4 cut(s)	32, 160, 370, 387
Bme1390I	CCNGG	2 cut(s)	71, 239
BmrFI	CCNGG	2 cut(s)	71, 239
BmsI	GCATC	1 cut(s)	156
BplI	GAGNNNNNCTC	2 cut(s)	323, 355
BpuMI	CCSGG	1 cut(s)	239
BsaJI	CCNNGG	3 cut(s)	228, 237, 354
BsaWI	WCCGGW	1 cut(s)	166
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
Bse118I	RCCGGY	1 cut(s)	217
Bse1I	ACTGG	3 cut(s)	21, 103, 213
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	3 cut(s)	228, 237, 354
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseMII	CTCAG	1 cut(s)	356
BseNI	ACTGG	3 cut(s)	21, 103, 213
BseXI	GCAGC	3 cut(s)	42, 145, 397
BseYI	CCCAGC	1 cut(s)	102
BsiSI	CCGG	3 cut(s)	167, 218, 239
BslI	CCNNNNNNNGG	1 cut(s)	184
BsmAI	GTCTC	2 cut(s)	29, 164
BspACI	CCGC	2 cut(s)	156, 368
BspCNI	CTCAG	1 cut(s)	355
BspMAI	CTGCAG	1 cut(s)	32
BsrFI	RCCGGY	1 cut(s)	217
BsrI	ACTGG	3 cut(s)	21, 103, 213
BssAI	RCCGGY	1 cut(s)	217
BssECI	CCNNGG	3 cut(s)	228, 237, 354
Bst2UI	CCWGG	1 cut(s)	71
Bst4CI	ACNGT	3 cut(s)	175, 283, 358
Bst6I	CTCTTC	3 cut(s)	104, 303, 324
BstC8I	GCNNGC	2 cut(s)	53, 219
BstDEI	CTNAG	1 cut(s)	342
BstDSI	CCRYGG	1 cut(s)	354
BstEII	GGTNACC	1 cut(s)	232
BstMAI	GTCTC	2 cut(s)	29, 164
BstMWI	GCNNNNNNNGC	2 cut(s)	52, 218
BstNI	CCWGG	1 cut(s)	71
BstPI	GGTNACC	1 cut(s)	232
BstSCI	CCNGG	2 cut(s)	69, 237
BstSFI	CTRYAG	1 cut(s)	28
BstV1I	GCAGC	3 cut(s)	42, 145, 397
BtgI	CCRYGG	1 cut(s)	354
BtsIMutI	CAGTG	1 cut(s)	288
Cac8I	GCNNGC	2 cut(s)	53, 219
CaiI	CAGNNNCTG	1 cut(s)	27
Cfr10I	RCCGGY	1 cut(s)	217
DdeI	CTNAG	1 cut(s)	342
DraIII	CACNNNGTG	1 cut(s)	263
Eam1104I	CTCTTC	3 cut(s)	104, 303, 324
EarI	CTCTTC	3 cut(s)	104, 303, 324
Eco91I	GGTNACC	1 cut(s)	232
EcoO65I	GGTNACC	1 cut(s)	232
EcoRII	CCWGG	1 cut(s)	69
FaiI	YATR	1 cut(s)	350
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
Fnu4HI	GCNGC	4 cut(s)	31, 159, 369, 386
Fsp4HI	GCNGC	4 cut(s)	31, 159, 369, 386
FspBI	CTAG	1 cut(s)	66
GluI	GCNGC	4 cut(s)	31, 159, 369, 386
GsaI	CCCAGC	1 cut(s)	106
HapII	CCGG	3 cut(s)	167, 218, 239
HinfI	GANTC	3 cut(s)	224, 242, 269
HpaII	CCGG	3 cut(s)	167, 218, 239
HphI	GGTGA	1 cut(s)	226
Hpy188I	TCNGA	2 cut(s)	229, 345
Hpy188III	TCNNGA	3 cut(s)	190, 275, 362
HpyCH4III	ACNGT	3 cut(s)	175, 283, 358
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	2 cut(s)	30, 46
HpyF10VI	GCNNNNNNNGC	2 cut(s)	52, 218
HpyF3I	CTNAG	1 cut(s)	342
HpySE526I	ACGT	1 cut(s)	324
KroI	GCCGGC	1 cut(s)	217
KroNI	GCCGGC	1 cut(s)	219
Lsp1109I	GCAGC	3 cut(s)	42, 145, 397
LweI	GCATC	1 cut(s)	156
MaeI	CTAG	1 cut(s)	66
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	232
MboII	GAAGA	4 cut(s)	121, 320, 341, 409
MluCI	AATT	1 cut(s)	85
MlyI	GAGTC	2 cut(s)	233, 236
MnlI	CCTC	5 cut(s)	72, 192, 223, 298, 325
MroNI	GCCGGC	1 cut(s)	217
MslI	CAYNNNNRTG	1 cut(s)	323
MspA1I	CMGCKG	1 cut(s)	158
MspI	CCGG	3 cut(s)	167, 218, 239
MspR9I	CCNGG	2 cut(s)	71, 239
MvaI	CCWGG	1 cut(s)	71
MwoI	GCNNNNNNNGC	2 cut(s)	52, 218
NaeI	GCCGGC	1 cut(s)	219
NciI	CCSGG	1 cut(s)	239
NgoMIV	GCCGGC	1 cut(s)	217
NmuCI	GTSAC	1 cut(s)	232
PdiI	GCCGGC	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	269
PflMI	CCANNNNNTGG	1 cut(s)	184
PkrI	GCNGC	4 cut(s)	32, 160, 370, 387
PleI	GAGTC	2 cut(s)	232, 236
PpsI	GAGTC	2 cut(s)	232, 236
Psp6I	CCWGG	1 cut(s)	69
PspEI	GGTNACC	1 cut(s)	232
PspFI	CCCAGC	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	69
PstI	CTGCAG	1 cut(s)	32
PstNI	CAGNNNCTG	1 cut(s)	27
RseI	CAYNNNNRTG	1 cut(s)	323
SatI	GCNGC	4 cut(s)	31, 159, 369, 386
SchI	GAGTC	2 cut(s)	233, 236
ScrFI	CCNGG	2 cut(s)	71, 239
SetI	ASST	7 cut(s)	19, 35, 75, 186, 234, 327, 390
SfaNI	GCATC	1 cut(s)	156
SfcI	CTRYAG	1 cut(s)	28
SmiMI	CAYNNNNRTG	1 cut(s)	323
Sse9I	AATT	1 cut(s)	85
SsiI	CCGC	2 cut(s)	156, 368
SspMI	CTAG	1 cut(s)	66
StyD4I	CCNGG	2 cut(s)	69, 237
TaaI	ACNGT	3 cut(s)	175, 283, 358
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	1 cut(s)	189
TasI	AATT	1 cut(s)	85
TauI	GCSGC	1 cut(s)	371
TfiI	GAWTC	1 cut(s)	269
TscAI	CASTG	1 cut(s)	288
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	3 cut(s)	30, 158, 385
Tsp45I	GTSAC	1 cut(s)	232
TspRI	CASTG	1 cut(s)	288
Van91I	CCANNNNNTGG	1 cut(s)	184
XapI	RAATTY	1 cut(s)	85
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.