Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0012748

Physical Location & Seq

Genomic Coordinates Reverse (-)

13288963 .. 13290259

Gene Structure 1297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G143700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCTTCTGCTTCAGCTGCTTCTCTTTGCAGGTTCCAGCCCTTTCAAAACCAGCCAACCAAGACTTCTGGCCTGGTAACAAGAACAAGTTCAAGTTTACAATTGGTTTCTAATGGATGGGCTAAGTCTGGCTTCTCTTCTCTGAGAACCTCTCGTCTCCAAATCTGTTGCTCTGCCAAACATGAGACAGTGCAAAAGGTTGTGGAGATTGTGAGGAAGCAACTGGCTTTGCCTCCAGAGTCTGAGGTCACCCCTGACTCCAAGTTTGCATCCCTTGGTGCCGACTCTCTTGACACAGTGGAGATAGTGATGGGTTTGGAGGAAGAATTTGGCATAAGCGTTGAAGAGGAGAGCTCTCAGAACATAAGCACGGTCCAAGAAGCAGCTGATTTGATAGAGAAGCTCGTTGAGAAGAAAGCAGCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0032501 GO:0032502 GO:0032787 GO:0033218 GO:0036094 GO:0042335 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044620 GO:0045087 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0048856 GO:0050896 GO:0051192 GO:0051704 GO:0051707 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0098542 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP-binding

Protein Analysis

143

Amino Acids

15.25

Weight (kDa)

5.06

Isoelectric Point (pI)

51.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25050 AT4G25050
fragaria_vesca	FvH4_5g09190
malus_domestica	MD06G1132700.v1.1
prunus_persica	Prupe.5G143700_v2.0.a1 Prupe.5G144100_v2.0.a1
pyrus_communis	pycom06g12430 pycom14g12390
rosa_chinensis	RchiOBHm_Chr7g0188991
rosa_laevigata	RLG00000004645
rosa_multiflora	Rmu_ssc0000113.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265890
rosa_rugosa	Rorug06G0495300
rosa_samantha	Rh7AG099900 Rh7BG102100 Rh7CG103400 Rh7DG101900
rosa_wichuraiana	Rw7G008620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	21
AccB1I	GGYRCC	1 cut(s)	278
AcsI	RAATTY	1 cut(s)	326
AgsI	TTSAA	3 cut(s)	47, 93, 344
AjnI	CCWGG	1 cut(s)	72
AjuI	GAANNNNNNNTTGG	2 cut(s)	49, 81
AluBI	AGCT	5 cut(s)	17, 354, 386, 403, 422
AluI	AGCT	5 cut(s)	17, 354, 386, 403, 422
Alw21I	GWGCWC	1 cut(s)	356
Alw26I	GTCTC	2 cut(s)	161, 179
AlwNI	CAGNNNCTG	1 cut(s)	242
AoxI	GGCC	1 cut(s)	70
ApeKI	GCWGC	4 cut(s)	17, 383, 419, 422
ApoI	RAATTY	1 cut(s)	326
ArsI	GACNNNNNNTTYG	2 cut(s)	248, 280
Asp700I	GAANNNNTTC	1 cut(s)	88
AspS9I	GGNCC	1 cut(s)	373
AsuHPI	GGTGA	1 cut(s)	241
AvaII	GGWCC	1 cut(s)	373
BanI	GGYRCC	1 cut(s)	278
BanII	GRGCYC	1 cut(s)	356
Bbv12I	GWGCWC	1 cut(s)	356
BbvI	GCAGC	3 cut(s)	4, 395, 409
BccI	CCATC	2 cut(s)	111, 304
BciT130I	CCWGG	1 cut(s)	74
BcoDI	GTCTC	2 cut(s)	161, 179
BfuAI	ACCTGC	1 cut(s)	21
BisI	GCNGC	4 cut(s)	18, 384, 420, 423
BlsI	GCNGC	4 cut(s)	19, 385, 421, 424
Bme1390I	CCNGG	1 cut(s)	74
Bme18I	GGWCC	1 cut(s)	373
BmgT120I	GGNCC	1 cut(s)	373
BmiI	GGNNCC	2 cut(s)	35, 280
BmrFI	CCNGG	1 cut(s)	74
BmsI	GCATC	1 cut(s)	278
BplI	GAGNNNNNCTC	4 cut(s)	136, 168, 338, 370
BpmI	CTGGAG	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	274
Bse1I	ACTGG	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	74
BseDI	CCNNGG	1 cut(s)	274
BseGI	GGATG	2 cut(s)	122, 269
BseMII	CTCAG	3 cut(s)	134, 234, 371
BseNI	ACTGG	1 cut(s)	228
BseRI	GAGGAG	1 cut(s)	362
BseXI	GCAGC	3 cut(s)	4, 395, 409
BshFI	GGCC	1 cut(s)	72
BshNI	GGYRCC	1 cut(s)	278
BsiHKAI	GWGCWC	1 cut(s)	356
BsmAI	GTCTC	2 cut(s)	161, 179
BsmBI	CGTCTC	1 cut(s)	161
BsnI	GGCC	1 cut(s)	72
Bsp1286I	GDGCHC	1 cut(s)	356
BspANI	GGCC	1 cut(s)	72
BspCNI	CTCAG	3 cut(s)	135, 235, 370
BspLI	GGNNCC	2 cut(s)	35, 280
BspMI	ACCTGC	1 cut(s)	21
BspT107I	GGYRCC	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	228
BssECI	CCNNGG	1 cut(s)	274
BssT1I	CCWWGG	1 cut(s)	274
Bst2UI	CCWGG	1 cut(s)	74
Bst4CI	ACNGT	3 cut(s)	190, 298, 373
Bst6I	CTCTTC	2 cut(s)	142, 339
BstDEI	CTNAG	4 cut(s)	123, 143, 243, 357
BstEII	GGTNACC	1 cut(s)	247
BstF5I	GGATG	2 cut(s)	122, 269
BstMAI	GTCTC	2 cut(s)	161, 179
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstNI	CCWGG	1 cut(s)	74
BstPI	GGTNACC	1 cut(s)	247
BstSCI	CCNGG	1 cut(s)	72
BstV1I	GCAGC	3 cut(s)	4, 395, 409
BsuRI	GGCC	1 cut(s)	72
BtsCI	GGATG	2 cut(s)	122, 269
BtsIMutI	CAGTG	2 cut(s)	195, 303
BveI	ACCTGC	1 cut(s)	21
CaiI	CAGNNNCTG	1 cut(s)	242
Cfr13I	GGNCC	1 cut(s)	373
CviAII	CATG	1 cut(s)	182
DdeI	CTNAG	4 cut(s)	123, 143, 243, 357
Eam1104I	CTCTTC	2 cut(s)	142, 339
EarI	CTCTTC	2 cut(s)	142, 339
Ecl136II	GAGCTC	1 cut(s)	354
Eco130I	CCWWGG	1 cut(s)	274
Eco24I	GRGCYC	1 cut(s)	356
Eco47I	GGWCC	1 cut(s)	373
Eco53kI	GAGCTC	1 cut(s)	354
Eco91I	GGTNACC	1 cut(s)	247
EcoICRI	GAGCTC	1 cut(s)	354
EcoO65I	GGTNACC	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	72
EcoT14I	CCWWGG	1 cut(s)	274
EcoT38I	GRGCYC	1 cut(s)	356
ErhI	CCWWGG	1 cut(s)	274
Esp3I	CGTCTC	1 cut(s)	161
FaeI	CATG	1 cut(s)	185
FaiI	YATR	3 cut(s)	183, 335, 365
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FatI	CATG	1 cut(s)	181
Fnu4HI	GCNGC	4 cut(s)	18, 384, 420, 423
FokI	GGATG	2 cut(s)	129, 256
FriOI	GRGCYC	1 cut(s)	356
Fsp4HI	GCNGC	4 cut(s)	18, 384, 420, 423
GluI	GCNGC	4 cut(s)	18, 384, 420, 423
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	1 cut(s)	72
Hin1II	CATG	1 cut(s)	185
HinfI	GANTC	3 cut(s)	239, 257, 284
HphI	GGTGA	1 cut(s)	241
Hpy166II	GTNNAC	1 cut(s)	98
Hpy188I	TCNGA	3 cut(s)	144, 244, 360
Hpy188III	TCNNGA	2 cut(s)	236, 290
Hpy8I	GTNNAC	1 cut(s)	98
HpyCH4III	ACNGT	3 cut(s)	190, 298, 373
HpyCH4V	TGCA	3 cut(s)	30, 193, 269
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
HpyF3I	CTNAG	4 cut(s)	123, 143, 243, 357
Hsp92II	CATG	1 cut(s)	185
Lsp1109I	GCAGC	3 cut(s)	4, 395, 409
LweI	GCATC	1 cut(s)	278
MaeIII	GTNAC	2 cut(s)	76, 247
MboII	GAAGA	4 cut(s)	129, 335, 356, 424
MfeI	CAATTG	1 cut(s)	101
MhlI	GDGCHC	1 cut(s)	356
MluCI	AATT	2 cut(s)	101, 326
MlyI	GAGTC	3 cut(s)	248, 251, 278
MnlI	CCTC	6 cut(s)	160, 207, 238, 243, 313, 340
MroXI	GAANNNNTTC	1 cut(s)	88
MseI	TTAA	1 cut(s)	427
MspA1I	CMGCKG	3 cut(s)	17, 386, 422
MspR9I	CCNGG	1 cut(s)	74
MunI	CAATTG	1 cut(s)	101
MvaI	CCWGG	1 cut(s)	74
MwoI	GCNNNNNNNGC	1 cut(s)	17
NlaIII	CATG	1 cut(s)	185
NlaIV	GGNNCC	2 cut(s)	35, 280
NmuCI	GTSAC	1 cut(s)	247
PdmI	GAANNNNTTC	1 cut(s)	88
PkrI	GCNGC	4 cut(s)	19, 385, 421, 424
PleI	GAGTC	3 cut(s)	247, 251, 278
PpsI	GAGTC	3 cut(s)	247, 251, 278
Psp124BI	GAGCTC	1 cut(s)	356
Psp6I	CCWGG	1 cut(s)	72
PspEI	GGTNACC	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	72
PspN4I	GGNNCC	2 cut(s)	35, 280
PspPI	GGNCC	1 cut(s)	373
PstNI	CAGNNNCTG	1 cut(s)	242
PvuII	CAGCTG	3 cut(s)	17, 386, 422
SacI	GAGCTC	1 cut(s)	356
SaqAI	TTAA	1 cut(s)	427
SatI	GCNGC	4 cut(s)	18, 384, 420, 423
Sau96I	GGNCC	1 cut(s)	373
SchI	GAGTC	3 cut(s)	248, 251, 278
ScrFI	CCNGG	1 cut(s)	74
SduI	GDGCHC	1 cut(s)	356
SetI	ASST	9 cut(s)	19, 35, 152, 201, 249, 356, 388, 405, 424
SfaNI	GCATC	1 cut(s)	278
SinI	GGWCC	1 cut(s)	373
Sse9I	AATT	2 cut(s)	101, 326
SstI	GAGCTC	1 cut(s)	356
StyD4I	CCNGG	1 cut(s)	72
StyI	CCWWGG	1 cut(s)	274
TaaI	ACNGT	3 cut(s)	190, 298, 373
TasI	AATT	2 cut(s)	101, 326
Tru1I	TTAA	1 cut(s)	427
Tru9I	TTAA	1 cut(s)	427
TscAI	CASTG	2 cut(s)	195, 303
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	4 cut(s)	17, 383, 419, 422
Tsp45I	GTSAC	1 cut(s)	247
TspRI	CASTG	2 cut(s)	195, 303
VpaK11BI	GGWCC	1 cut(s)	373
XapI	RAATTY	1 cut(s)	326
XmnI	GAANNNNTTC	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.