Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0012748

Physical Location & Seq

Genomic Coordinates Reverse (-)

13297452 .. 13298395

Gene Structure 944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G144100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

GAGCAGCTTCAATGGCTTCTGTTTCAGCTACTTCTCTTTGCAGGTTCCAGCCCTTTCAAAACCAGCCAACCAAGACTTCTGGTAACAAGAACAAGTTTAAGTTTACAATTGGTTTCTAATGAATGGGCTAAGACTGGTTTCTCTTCTCTGAGGACCTCTCGTCTCCAAATCTGTTGCGCGGCCAAACCTGAGACAGTGCAAAAGGTTGTGGAGATTGTGAGGAAGCAACTGGCTTTGCCTCCAGAGTATGAGGTCACCCCTGACTCCAAGTTTGCATCCCTTGGTGCCGACTCTCTTGACACAGTGGAGATAGTGATAGGTTTGGAGGAAGAATTTGACATAAGCGTTGAAGAGGAGAGCTCTCAGAACATAAGCACGGTCCAAGAAGCAGCTGATTTGATAGAGAAGCTCGTTGAGAAGAAAGCAGCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0032501 GO:0032502 GO:0032787 GO:0033218 GO:0036094 GO:0042335 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044620 GO:0045087 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0048856 GO:0050896 GO:0051192 GO:0051704 GO:0051707 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0098542 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP-binding

Protein Analysis

145

Amino Acids

15.94

Weight (kDa)

4.67

Isoelectric Point (pI)

52.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25050 AT4G25050
fragaria_vesca	FvH4_5g09190
malus_domestica	MD06G1132700.v1.1
prunus_persica	Prupe.5G143700_v2.0.a1 Prupe.5G144100_v2.0.a1
pyrus_communis	pycom06g12430 pycom14g12390
rosa_chinensis	RchiOBHm_Chr7g0188991
rosa_laevigata	RLG00000004645
rosa_multiflora	Rmu_ssc0000113.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265890
rosa_rugosa	Rorug06G0495300
rosa_samantha	Rh7AG099900 Rh7BG102100 Rh7CG103400 Rh7DG101900
rosa_wichuraiana	Rw7G008620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	32
AccB1I	GGYRCC	1 cut(s)	284
AccII	CGCG	1 cut(s)	179
AciI	CCGC	1 cut(s)	179
AcoI	YGGCCR	1 cut(s)	180
AcsI	RAATTY	1 cut(s)	332
AgsI	TTSAA	3 cut(s)	11, 58, 350
AhdI	GACNNNNNGTC	1 cut(s)	159
AjuI	GAANNNNNNNTTGG	2 cut(s)	60, 92
AluBI	AGCT	6 cut(s)	7, 28, 360, 392, 409, 428
AluI	AGCT	6 cut(s)	7, 28, 360, 392, 409, 428
Alw21I	GWGCWC	1 cut(s)	362
Alw26I	GTCTC	2 cut(s)	167, 185
AoxI	GGCC	1 cut(s)	180
ApeKI	GCWGC	4 cut(s)	4, 389, 425, 428
ApoI	RAATTY	1 cut(s)	332
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
AspLEI	GCGC	1 cut(s)	179
AspS9I	GGNCC	2 cut(s)	153, 379
AsuHPI	GGTGA	1 cut(s)	247
AvaII	GGWCC	2 cut(s)	153, 379
BanI	GGYRCC	1 cut(s)	284
BanII	GRGCYC	1 cut(s)	362
Bbv12I	GWGCWC	1 cut(s)	362
BbvI	GCAGC	3 cut(s)	16, 401, 415
BcoDI	GTCTC	2 cut(s)	167, 185
BfuAI	ACCTGC	1 cut(s)	32
BisI	GCNGC	5 cut(s)	5, 180, 390, 426, 429
BlsI	GCNGC	5 cut(s)	6, 181, 391, 427, 430
Bme18I	GGWCC	2 cut(s)	153, 379
BmeRI	GACNNNNNGTC	1 cut(s)	159
BmgT120I	GGNCC	2 cut(s)	153, 379
BmiI	GGNNCC	2 cut(s)	46, 286
BmsI	GCATC	1 cut(s)	284
BplI	GAGNNNNNCTC	4 cut(s)	142, 174, 344, 376
BpmI	CTGGAG	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	280
Bse1I	ACTGG	2 cut(s)	139, 234
BseDI	CCNNGG	1 cut(s)	280
BseGI	GGATG	1 cut(s)	275
BseMII	CTCAG	3 cut(s)	140, 180, 377
BseNI	ACTGG	2 cut(s)	139, 234
BseRI	GAGGAG	1 cut(s)	368
BseXI	GCAGC	3 cut(s)	16, 401, 415
Bsh1236I	CGCG	1 cut(s)	179
BshFI	GGCC	1 cut(s)	182
BshNI	GGYRCC	1 cut(s)	284
BsiHKAI	GWGCWC	1 cut(s)	362
BsmAI	GTCTC	2 cut(s)	167, 185
BsmBI	CGTCTC	1 cut(s)	167
BsnI	GGCC	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	362
BspACI	CCGC	1 cut(s)	179
BspANI	GGCC	1 cut(s)	182
BspCNI	CTCAG	3 cut(s)	141, 181, 376
BspFNI	CGCG	1 cut(s)	179
BspLI	GGNNCC	2 cut(s)	46, 286
BspMI	ACCTGC	1 cut(s)	32
BspT107I	GGYRCC	1 cut(s)	284
BsrI	ACTGG	2 cut(s)	139, 234
BssECI	CCNNGG	1 cut(s)	280
BssT1I	CCWWGG	1 cut(s)	280
Bst4CI	ACNGT	3 cut(s)	196, 304, 379
Bst6I	CTCTTC	2 cut(s)	148, 345
BstDEI	CTNAG	4 cut(s)	129, 149, 189, 363
BstEII	GGTNACC	1 cut(s)	253
BstF5I	GGATG	1 cut(s)	275
BstFNI	CGCG	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	179
BstMAI	GTCTC	2 cut(s)	167, 185
BstMWI	GCNNNNNNNGC	1 cut(s)	13
BstPI	GGTNACC	1 cut(s)	253
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	3 cut(s)	16, 401, 415
BsuRI	GGCC	1 cut(s)	182
BtsCI	GGATG	1 cut(s)	275
BtsIMutI	CAGTG	2 cut(s)	201, 309
BveI	ACCTGC	1 cut(s)	32
CfoI	GCGC	1 cut(s)	179
Cfr13I	GGNCC	2 cut(s)	153, 379
DdeI	CTNAG	4 cut(s)	129, 149, 189, 363
DriI	GACNNNNNGTC	1 cut(s)	159
EaeI	YGGCCR	1 cut(s)	180
Eam1104I	CTCTTC	2 cut(s)	148, 345
Eam1105I	GACNNNNNGTC	1 cut(s)	159
EarI	CTCTTC	2 cut(s)	148, 345
Ecl136II	GAGCTC	1 cut(s)	360
Eco130I	CCWWGG	1 cut(s)	280
Eco24I	GRGCYC	1 cut(s)	362
Eco47I	GGWCC	2 cut(s)	153, 379
Eco53kI	GAGCTC	1 cut(s)	360
Eco91I	GGTNACC	1 cut(s)	253
EcoICRI	GAGCTC	1 cut(s)	360
EcoO109I	RGGNCCY	1 cut(s)	153
EcoO65I	GGTNACC	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	280
EcoT38I	GRGCYC	1 cut(s)	362
ErhI	CCWWGG	1 cut(s)	280
Esp3I	CGTCTC	1 cut(s)	167
FaiI	YATR	3 cut(s)	249, 341, 371
Fnu4HI	GCNGC	5 cut(s)	5, 180, 390, 426, 429
FokI	GGATG	1 cut(s)	262
FriOI	GRGCYC	1 cut(s)	362
Fsp4HI	GCNGC	5 cut(s)	5, 180, 390, 426, 429
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	5 cut(s)	5, 180, 390, 426, 429
GsuI	CTGGAG	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	182
HhaI	GCGC	1 cut(s)	179
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HinfI	GANTC	2 cut(s)	263, 290
HphI	GGTGA	1 cut(s)	247
Hpy166II	GTNNAC	1 cut(s)	104
Hpy188I	TCNGA	2 cut(s)	150, 366
Hpy188III	TCNNGA	2 cut(s)	242, 296
Hpy8I	GTNNAC	1 cut(s)	104
HpyCH4III	ACNGT	3 cut(s)	196, 304, 379
HpyCH4V	TGCA	3 cut(s)	41, 199, 275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	13
HpyF3I	CTNAG	4 cut(s)	129, 149, 189, 363
HspAI	GCGC	1 cut(s)	177
LpnPI	CCDG	9 cut(s)	27, 61, 65, 76, 120, 201, 215, 255, 273
Lsp1109I	GCAGC	3 cut(s)	16, 401, 415
LweI	GCATC	1 cut(s)	284
MaeIII	GTNAC	2 cut(s)	82, 253
MboII	GAAGA	4 cut(s)	135, 341, 362, 430
MfeI	CAATTG	1 cut(s)	107
MhlI	GDGCHC	1 cut(s)	362
MluCI	AATT	2 cut(s)	107, 332
MlyI	GAGTC	2 cut(s)	257, 284
MnlI	CCTC	7 cut(s)	144, 166, 213, 244, 249, 319, 346
MseI	TTAA	2 cut(s)	98, 433
MspA1I	CMGCKG	2 cut(s)	392, 428
MunI	CAATTG	1 cut(s)	107
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	1 cut(s)	13
NlaIV	GGNNCC	2 cut(s)	46, 286
NmuCI	GTSAC	1 cut(s)	253
PkrI	GCNGC	5 cut(s)	6, 181, 391, 427, 430
PleI	GAGTC	2 cut(s)	257, 284
PpsI	GAGTC	2 cut(s)	257, 284
PpuMI	RGGWCCY	1 cut(s)	153
Psp124BI	GAGCTC	1 cut(s)	362
Psp5II	RGGWCCY	1 cut(s)	153
PspEI	GGTNACC	1 cut(s)	253
PspN4I	GGNNCC	2 cut(s)	46, 286
PspPI	GGNCC	2 cut(s)	153, 379
PspPPI	RGGWCCY	1 cut(s)	153
PvuII	CAGCTG	2 cut(s)	392, 428
SacI	GAGCTC	1 cut(s)	362
SaqAI	TTAA	2 cut(s)	98, 433
SatI	GCNGC	5 cut(s)	5, 180, 390, 426, 429
Sau96I	GGNCC	2 cut(s)	153, 379
SchI	GAGTC	2 cut(s)	257, 284
SduI	GDGCHC	1 cut(s)	362
SfaNI	GCATC	1 cut(s)	284
SinI	GGWCC	2 cut(s)	153, 379
Sse9I	AATT	2 cut(s)	107, 332
SsiI	CCGC	1 cut(s)	179
SstI	GAGCTC	1 cut(s)	362
StyI	CCWWGG	1 cut(s)	280
TaaI	ACNGT	3 cut(s)	196, 304, 379
TasI	AATT	2 cut(s)	107, 332
TauI	GCSGC	1 cut(s)	182
Tru1I	TTAA	2 cut(s)	98, 433
Tru9I	TTAA	2 cut(s)	98, 433
TscAI	CASTG	2 cut(s)	201, 309
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	4 cut(s)	4, 389, 425, 428
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	1 cut(s)	135
TspRI	CASTG	2 cut(s)	201, 309
VpaK11BI	GGWCC	2 cut(s)	153, 379
XapI	RAATTY	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.