Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0012748

Physical Location & Seq

Genomic Coordinates Reverse (-)

15399390 .. 15400578

Gene Structure 1189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g12390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCTTCTGCTTCAGCAACTTCTCTCTGCAGGTTCCAAACCTTTCAAAACCAACCAATCAAGACTAGCCAGTACGTAACAAGGACAAGTTCAAGTTTAAAGTTGGTTTCTAATGGATGGGCCAAGAGTGGCTTCTCATCTTTCAGGACCTCTCGTCTCCAAATTTGTTGCACTGCCAAGGCGGAGACAGTGCAAAAGGTTGTGGAGATTGTGAGGAAGCAGCTGACTTTGCCTCCGGAGTCTGAAGTCTCCCCCGACTCCAAGTTTGCATTACTTGGTGCCGACTCTCTCGACACTGTGGAGATAGTGATGAATTTGGAGGAAGAGTTTGATATTAGCGTTGAAGAGGAGAGTTCTGAGAACATAAGCACGGTCCAAGAGGCAGCTGATTTGATAGAGAAGCTCATTGAAAAGAAATCAGCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0032501 GO:0032502 GO:0032787 GO:0033218 GO:0036094 GO:0042335 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044620 GO:0045087 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0048856 GO:0050896 GO:0051192 GO:0051704 GO:0051707 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0098542 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP-binding

Protein Analysis

143

Amino Acids

15.59

Weight (kDa)

4.85

Isoelectric Point (pI)

55.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP-binding	PF00550	65 - 132	2e-11	Phosphopantetheine attachment site
PP-binding_2	PF14573	95 - 132	3.1e-07	Acyl-carrier

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25050 AT4G25050
fragaria_vesca	FvH4_5g09190
malus_domestica	MD06G1132700.v1.1
prunus_persica	Prupe.5G143700_v2.0.a1 Prupe.5G144100_v2.0.a1
pyrus_communis	pycom06g12430 pycom14g12390
rosa_chinensis	RchiOBHm_Chr7g0188991
rosa_laevigata	RLG00000004645
rosa_multiflora	Rmu_ssc0000113.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265890
rosa_rugosa	Rorug06G0495300
rosa_samantha	Rh7AG099900 Rh7BG102100 Rh7CG103400 Rh7DG101900
rosa_wichuraiana	Rw7G008620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	21
AccB1I	GGYRCC	1 cut(s)	278
AccIII	TCCGGA	1 cut(s)	235
AciI	CCGC	1 cut(s)	182
AcsI	RAATTY	2 cut(s)	162, 313
AcuI	CTGAAG	1 cut(s)	264
AfaI	GTAC	1 cut(s)	74
AgsI	TTSAA	4 cut(s)	47, 93, 344, 410
AhdI	GACNNNNNGTC	1 cut(s)	153
AjuI	GAANNNNNNNTTGG	2 cut(s)	116, 148
AluBI	AGCT	4 cut(s)	223, 386, 403, 422
AluI	AGCT	4 cut(s)	223, 386, 403, 422
Alw26I	GTCTC	3 cut(s)	161, 179, 253
Aor13HI	TCCGGA	1 cut(s)	235
AoxI	GGCC	1 cut(s)	120
ApeKI	GCWGC	3 cut(s)	220, 383, 422
ApoI	RAATTY	2 cut(s)	162, 313
ArsI	GACNNNNNNTTYG	2 cut(s)	248, 280
AspS9I	GGNCC	3 cut(s)	120, 147, 373
AvaII	GGWCC	2 cut(s)	147, 373
BanI	GGYRCC	1 cut(s)	278
BbvI	GCAGC	3 cut(s)	232, 395, 409
BccI	CCATC	1 cut(s)	111
BcoDI	GTCTC	3 cut(s)	161, 179, 253
BfaI	CTAG	1 cut(s)	66
BfmI	CTRYAG	1 cut(s)	28
BfuAI	ACCTGC	1 cut(s)	21
BisI	GCNGC	3 cut(s)	221, 384, 423
BlsI	GCNGC	3 cut(s)	222, 385, 424
Bme18I	GGWCC	2 cut(s)	147, 373
BmeRI	GACNNNNNGTC	1 cut(s)	153
BmgT120I	GGNCC	3 cut(s)	120, 147, 373
BmiI	GGNNCC	2 cut(s)	35, 280
BsaAI	YACGTR	1 cut(s)	76
BsaJI	CCNNGG	1 cut(s)	177
BsaWI	WCCGGW	1 cut(s)	235
BsaXI	ACNNNNNCTCC	4 cut(s)	217, 247, 311, 341
Bse1I	ACTGG	1 cut(s)	70
BseAI	TCCGGA	1 cut(s)	235
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	1 cut(s)	122
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	1 cut(s)	70
BseRI	GAGGAG	1 cut(s)	362
BseXI	GCAGC	3 cut(s)	232, 395, 409
BshFI	GGCC	1 cut(s)	122
BshNI	GGYRCC	1 cut(s)	278
BsiSI	CCGG	1 cut(s)	236
BsmAI	GTCTC	3 cut(s)	161, 179, 253
BsmBI	CGTCTC	1 cut(s)	161
BsnI	GGCC	1 cut(s)	122
Bsp13I	TCCGGA	1 cut(s)	235
BspACI	CCGC	1 cut(s)	182
BspANI	GGCC	1 cut(s)	122
BspCNI	CTCAG	1 cut(s)	349
BspEI	TCCGGA	1 cut(s)	235
BspLI	GGNNCC	2 cut(s)	35, 280
BspMAI	CTGCAG	1 cut(s)	32
BspMI	ACCTGC	1 cut(s)	21
BspT107I	GGYRCC	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	70
BssECI	CCNNGG	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	177
Bst4CI	ACNGT	3 cut(s)	190, 298, 373
Bst6I	CTCTTC	2 cut(s)	318, 339
BstBAI	YACGTR	1 cut(s)	76
BstDEI	CTNAG	1 cut(s)	357
BstF5I	GGATG	1 cut(s)	122
BstMAI	GTCTC	3 cut(s)	161, 179, 253
BstMWI	GCNNNNNNNGC	1 cut(s)	229
BstSFI	CTRYAG	1 cut(s)	28
BstSNI	TACGTA	1 cut(s)	76
BstV1I	GCAGC	3 cut(s)	232, 395, 409
BsuRI	GGCC	1 cut(s)	122
BtsCI	GGATG	1 cut(s)	122
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	3 cut(s)	171, 195, 294
BveI	ACCTGC	1 cut(s)	21
Cfr13I	GGNCC	3 cut(s)	120, 147, 373
Csp6I	GTAC	1 cut(s)	73
CviJI	RGCY	8 cut(s)	5, 69, 122, 132, 223, 386, 403, 422
CviKI_1	RGCY	8 cut(s)	5, 69, 122, 132, 223, 386, 403, 422
CviQI	GTAC	1 cut(s)	73
DdeI	CTNAG	1 cut(s)	357
DraI	TTTAAA	1 cut(s)	99
DriI	GACNNNNNGTC	1 cut(s)	153
Eam1104I	CTCTTC	2 cut(s)	318, 339
Eam1105I	GACNNNNNGTC	1 cut(s)	153
EarI	CTCTTC	2 cut(s)	318, 339
EciI	GGCGGA	1 cut(s)	197
Eco105I	TACGTA	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	177
Eco47I	GGWCC	2 cut(s)	147, 373
Eco57I	CTGAAG	1 cut(s)	264
EcoO109I	RGGNCCY	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	177
Esp3I	CGTCTC	1 cut(s)	161
FaiI	YATR	1 cut(s)	365
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
Fnu4HI	GCNGC	3 cut(s)	221, 384, 423
FokI	GGATG	1 cut(s)	129
Fsp4HI	GCNGC	3 cut(s)	221, 384, 423
FspBI	CTAG	1 cut(s)	66
GluI	GCNGC	3 cut(s)	221, 384, 423
HaeIII	GGCC	1 cut(s)	122
HapII	CCGG	1 cut(s)	236
HinfI	GANTC	3 cut(s)	239, 257, 284
HpaII	CCGG	1 cut(s)	236
Hpy188I	TCNGA	2 cut(s)	244, 358
Hpy188III	TCNNGA	4 cut(s)	61, 145, 236, 290
HpyCH4III	ACNGT	3 cut(s)	190, 298, 373
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	4 cut(s)	30, 171, 193, 269
HpyF10VI	GCNNNNNNNGC	1 cut(s)	229
HpyF3I	CTNAG	1 cut(s)	357
HpySE526I	ACGT	1 cut(s)	75
Kpn2I	TCCGGA	1 cut(s)	235
LpnPI	CCDG	4 cut(s)	16, 83, 130, 249
Lsp1109I	GCAGC	3 cut(s)	232, 395, 409
MaeI	CTAG	1 cut(s)	66
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	76
MboII	GAAGA	2 cut(s)	335, 356
MluCI	AATT	2 cut(s)	162, 313
MlyI	GAGTC	3 cut(s)	248, 251, 278
MnlI	CCTC	6 cut(s)	160, 207, 243, 313, 340, 373
MroI	TCCGGA	1 cut(s)	235
MseI	TTAA	2 cut(s)	98, 427
MspA1I	CMGCKG	3 cut(s)	223, 386, 422
MspI	CCGG	1 cut(s)	236
MwoI	GCNNNNNNNGC	1 cut(s)	229
NlaIV	GGNNCC	2 cut(s)	35, 280
PkrI	GCNGC	3 cut(s)	222, 385, 424
PleI	GAGTC	3 cut(s)	247, 251, 278
PpsI	GAGTC	3 cut(s)	247, 251, 278
Ppu21I	YACGTR	1 cut(s)	76
PpuMI	RGGWCCY	1 cut(s)	147
Psp5II	RGGWCCY	1 cut(s)	147
PspN4I	GGNNCC	2 cut(s)	35, 280
PspPI	GGNCC	3 cut(s)	120, 147, 373
PspPPI	RGGWCCY	1 cut(s)	147
PstI	CTGCAG	1 cut(s)	32
PvuII	CAGCTG	3 cut(s)	223, 386, 422
RsaI	GTAC	1 cut(s)	74
RsaNI	GTAC	1 cut(s)	73
SaqAI	TTAA	2 cut(s)	98, 427
SatI	GCNGC	3 cut(s)	221, 384, 423
Sau96I	GGNCC	3 cut(s)	120, 147, 373
SchI	GAGTC	3 cut(s)	248, 251, 278
SetI	ASST	9 cut(s)	35, 44, 78, 152, 201, 225, 388, 405, 424
SfcI	CTRYAG	1 cut(s)	28
SinI	GGWCC	2 cut(s)	147, 373
SnaBI	TACGTA	1 cut(s)	76
Sse9I	AATT	2 cut(s)	162, 313
SsiI	CCGC	1 cut(s)	182
SspMI	CTAG	1 cut(s)	66
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	3 cut(s)	190, 298, 373
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	1 cut(s)	291
TasI	AATT	2 cut(s)	162, 313
Tru1I	TTAA	2 cut(s)	98, 427
Tru9I	TTAA	2 cut(s)	98, 427
TscAI	CASTG	3 cut(s)	178, 195, 301
TseI	GCWGC	3 cut(s)	220, 383, 422
TspDTI	ATGAA	1 cut(s)	326
TspRI	CASTG	3 cut(s)	178, 195, 301
VpaK11BI	GGWCC	2 cut(s)	147, 373
XapI	RAATTY	2 cut(s)	162, 313
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.