AT4G26680

Pentacotripeptide-repeat region of PRORP

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
13454652 .. 13456631
1980 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G26680.2

Sequence Viewer

Length: 1566 bp
ATGATTCGCATAAGCATCGGAGTTAATCGCCGTCTGCGTTATCAATTCTCAAGTTTTGCTGGCTACAGTGGATCTGAAAACCCTAGGCTCTTTAAAACTCTCGGCGCTGCAAACACCCCGATTCCTCACAGAAGGAATCCTGAACCTAAAGGCCAAGATCTTGATTTCGTCAATGTTGCTCATAGCCACCTGATTCAATCTGATTGGGATAAGCTAAATAAGCTATCAGACCACTTGGATTCATTTAGGGTCAAGAACGTATTACTGAAGATACAGAAAGATTATCTTCTTTCTCTTGAATTCTTCAATTGGGCGAAAACCCGAAACCCAGGTTCTCACTCTCTTGAAACCCATGCTATAGTTCTTCACACTCTCACTAAAAACCGCAAGTTCAAGTCTGCAGAGTCCATTTTGAGAGATGTACTTGTAAATGGTGGTGTGGATTTGCCTGCCAAAGTATTTGATGCTTTGTTGTATTCGTACCGGGAATGTGATTCTACGCCTAGAGTGTTTGATTCACTCTTCAAAACTTTTGCTCATTTGAAGAAATTCAGAAATGCTACAGATACTTTTATGCAGATGAAGGATTATGGGTTTCTTCCAACTGTTGAATCTTGCAATGCTTACATGAGTTCATTACTTGGTCAAGGGAGGGTGGATATTGCTTTGAGGTTTTACAGAGAAATGCGGCGGTGTAAGATATCTCCAAACCCATACACTCTCAACATGGTAATGTCAGGTTATTGTAGGTCTGGAAAACTTGACAAGGGCATTGAGTTACTACAAGACATGGAAAGATTGGGTTTTCGGGCTACAGATGTGTCGTATAATACTTTGATAGCCGGACATTGCGAAAAGGGTCTTTTGAGCTCAGCTTTGAAGCTTAAGAACATGATGGGAAAGAGTGGTCTGCAGCCTAATGTGGTTACTTTTAACACTCTCATCCATGGGTTTTGCAGAGCTATGAAGTTACAAGAAGCTAGTAAGGTTTTCGGTGAGATGAAAGCGGTCAACGTGGCTCCCAACACTGTCACGTATAACACGTTGATTAATGGGTACAGCCAACAGGGTGATCACGAAATGGCGTTCCGGTTTTATGAAGATATGGTCTGCAACGGGATTCAACGTGACATTTTGACGTACAACGCGTTGATATTTGGACTATGCAAACAAGCTAAGACGAGGAAAGCTGCACAGTTTGTTAAAGAACTCGACAAAGAGAATTTGGTGCCAAACTCGTCAACCTTTTCTGCGCTAATAATGGGACAATGCGTGAGGAAAAATGCAGACCGTGGTTTTGAACTGTACAAAAGCATGATTAGGAGTGGTTGCCATCCGAATGAACAAACATTCAACATGCTGGTTTCTGCCTTCTGTAGGAATGAGGATTTTGATGGAGCATCTCAAGTGCTAAGGGAAATGGTCAGAAGATCAATTCCTCTTGATTCAAGGACTGTTCATCAGGTCTGCAATGGACTTAAGCATCAAGGGAAAGACCAACTTGTGAAAAAGTTGTTACAGGAGATGGAAGGGAAAAAGTTTCTACAAGAATCTTTTAATAACTGA

Protein Analysis

521

Amino Acids

59.36

Weight (kDa)

9.45

Isoelectric Point (pI)

32.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 201 - 250 2.9e-11 PPR repeat family
PPR_1 PF12854 234 - 265 1.1e-07 PPR repeat
PPR_2 PF13041 240 - 278 1.4e-07 PPR repeat family
PPR PF01535 240 - 269 6.3e-07 PPR repeat
PPR_3 PF13812 260 - 315 3.1e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 268 - 299 2.8e-06 PPR repeat
PPR_2 PF13041 274 - 320 1.1e-16 PPR repeat family
PPR_3 PF13812 295 - 353 9.7e-16 Pentatricopeptide repeat domain
PPR_1 PF12854 303 - 335 8.7e-15 PPR repeat
PPR_2 PF13041 306 - 353 7.1e-18 PPR repeat family
PPR PF01535 309 - 336 1.7e-07 PPR repeat
TPR_24 PF23276 327 - 439 2.6e-06 Fungal tetratrico peptide repeats
PPR_1 PF12854 339 - 370 3.5e-08 PPR repeat
PPR_2 PF13041 341 - 390 7.6e-19 PPR repeat family
PPR PF01535 344 - 374 6.4e-09 PPR repeat
PPR_long PF17177 346 - 507 1.9e-11 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 366 - 420 7.8e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 372 - 403 3.2e-06 PPR repeat
PPR_2 PF13041 377 - 424 3.1e-10 PPR repeat family
PPR_2 PF13041 411 - 460 2.7e-11 PPR repeat family
PPR_1 PF12854 443 - 475 2.9e-10 PPR repeat
PPR_2 PF13041 450 - 493 8.5e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1228
AccII CGCG 1 cut(s) 1148
AciI CCGC 4 cut(s) 385, 688, 691, 1007
AclWI GGATC 1 cut(s) 79
AcsI RAATTY 3 cut(s) 299, 548, 1222
AcuI CTGAAG 1 cut(s) 287
AfaI GTAC 5 cut(s) 423, 482, 1058, 1142, 1307
AfiI CCNNNNNNNGG 1 cut(s) 1377
AflII CTTAAG 2 cut(s) 884, 1478
AflIII ACRYGT 2 cut(s) 1041, 1146
AjnI CCWGG 1 cut(s) 328
AluBI AGCT 9 cut(s) 214, 223, 870, 875, 883, 962, 980, 1175, 1190
AluI AGCT 9 cut(s) 214, 223, 870, 875, 883, 962, 980, 1175, 1190
Alw21I GWGCWC 1 cut(s) 872
AlwI GGATC 1 cut(s) 79
AoxI GGCC 1 cut(s) 151
ApeKI GCWGC 3 cut(s) 107, 913, 1190
ApoI RAATTY 3 cut(s) 299, 548, 1222
ArsI GACNNNNNNTTYG 2 cut(s) 1280, 1312
AseI ATTAAT 1 cut(s) 1050
Asp700I GAANNNNTTC 1 cut(s) 548
AspA2I CCTAGG 1 cut(s) 83
AspLEI GCGC 2 cut(s) 107, 1255
AsuC2I CCSGG 1 cut(s) 485
AsuHPI GGTGA 2 cut(s) 1007, 1082
AvrII CCTAGG 1 cut(s) 83
BanI GGYRCC 1 cut(s) 1228
BanII GRGCYC 1 cut(s) 872
Bbv12I GWGCWC 1 cut(s) 872
BbvI GCAGC 3 cut(s) 94, 925, 1177
BccI CCATC 4 cut(s) 889, 1341, 1388, 1519
BceAI ACGGC 1 cut(s) 15
BcgI CGANNNNNNTGC 1 cut(s) 32
BciT130I CCWGG 1 cut(s) 330
BclI TGATCA 1 cut(s) 1072
BcnI CCSGG 1 cut(s) 485
BfaI CTAG 3 cut(s) 84, 504, 981
BfmI CTRYAG 7 cut(s) 64, 357, 399, 561, 813, 911, 1375
BfoI RGCGCY 1 cut(s) 108
BfrI CTTAAG 2 cut(s) 884, 1478
BglII AGATCT 1 cut(s) 157
BisI GCNGC 4 cut(s) 108, 689, 914, 1191
BlnI CCTAGG 1 cut(s) 83
BlpI GCTNAGC 1 cut(s) 871
BlsI GCNGC 4 cut(s) 109, 690, 915, 1192
Bme1390I CCNGG 2 cut(s) 330, 485
BmiI GGNNCC 2 cut(s) 1020, 1230
BmrFI CCNGG 2 cut(s) 330, 485
BmsI GCATC 4 cut(s) 24, 454, 1409, 1492
Bpu10I CCTNAGC 1 cut(s) 1412
Bpu1102I GCTNAGC 1 cut(s) 871
BpuEI CTTGAG 2 cut(s) 34, 1389
BpuMI CCSGG 1 cut(s) 485
BsaAI YACGTR 1 cut(s) 1035
BsaJI CCNNGG 4 cut(s) 83, 328, 946, 1291
BsaWI WCCGGW 1 cut(s) 1089
Bsc4I CCNNNNNNNGG 1 cut(s) 1377
Bse3DI GCAATG 3 cut(s) 625, 847, 1477
BseBI CCWGG 1 cut(s) 330
BseDI CCNNGG 4 cut(s) 83, 328, 946, 1291
BseGI GGATG 2 cut(s) 942, 1333
BseLI CCNNNNNNNGG 1 cut(s) 1377
BseMI GCAATG 3 cut(s) 625, 847, 1477
BseMII CTCAG 1 cut(s) 885
BseXI GCAGC 3 cut(s) 94, 925, 1177
BsgI GTGCAG 1 cut(s) 1176
Bsh1236I CGCG 1 cut(s) 1148
BshFI GGCC 1 cut(s) 153
BshNI GGYRCC 1 cut(s) 1228
BsiHKAI GWGCWC 1 cut(s) 872
BsiSI CCGG 3 cut(s) 484, 843, 1090
BslFI GGGAC 1 cut(s) 1278
BslI CCNNNNNNNGG 1 cut(s) 1377
BsmFI GGGAC 1 cut(s) 1278
BsnI GGCC 1 cut(s) 153
Bsp1286I GDGCHC 1 cut(s) 872
Bsp1407I TGTACA 1 cut(s) 1305
Bsp143I GATC 4 cut(s) 71, 157, 1072, 1430
Bsp1720I GCTNAGC 1 cut(s) 871
Bsp19I CCATGG 1 cut(s) 946
BspACI CCGC 4 cut(s) 385, 688, 691, 1007
BspANI GGCC 1 cut(s) 153
BspCNI CTCAG 1 cut(s) 884
BspFNI CGCG 1 cut(s) 1148
BspLI GGNNCC 2 cut(s) 1020, 1230
BspMAI CTGCAG 2 cut(s) 403, 915
BspPI GGATC 1 cut(s) 79
BspT107I GGYRCC 1 cut(s) 1228
BspTI CTTAAG 2 cut(s) 884, 1478
BsrDI GCAATG 3 cut(s) 625, 847, 1477
BsrGI TGTACA 1 cut(s) 1305
BssECI CCNNGG 4 cut(s) 83, 328, 946, 1291
BssMI GATC 4 cut(s) 71, 157, 1072, 1430
BssT1I CCWWGG 2 cut(s) 83, 946
Bst2UI CCWGG 1 cut(s) 330
Bst4CI ACNGT 7 cut(s) 68, 607, 1030, 1197, 1292, 1305, 1456
Bst6I CTCTTC 1 cut(s) 527
BstAFI CTTAAG 2 cut(s) 884, 1478
BstAUI TGTACA 1 cut(s) 1305
BstBAI YACGTR 1 cut(s) 1035
BstC8I GCNNGC 2 cut(s) 61, 450
BstDEI CTNAG 3 cut(s) 871, 1176, 1412
BstDSI CCRYGG 2 cut(s) 946, 1291
BstENI CCTNNNNNAGG 1 cut(s) 1375
BstF5I GGATG 2 cut(s) 942, 1333
BstFNI CGCG 1 cut(s) 1148
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 2 cut(s) 107, 1255
BstKTI GATC 4 cut(s) 74, 160, 1075, 1433
BstMBI GATC 4 cut(s) 71, 157, 1072, 1430
BstMWI GCNNNNNNNGC 1 cut(s) 220
BstNI CCWGG 1 cut(s) 330
BstNSI RCATGY 1 cut(s) 1360
BstSCI CCNGG 2 cut(s) 328, 483
BstSFI CTRYAG 7 cut(s) 64, 357, 399, 561, 813, 911, 1375
BstUI CGCG 1 cut(s) 1148
BstV1I GCAGC 3 cut(s) 94, 925, 1177
BstX2I RGATCY 2 cut(s) 71, 157
BstYI RGATCY 2 cut(s) 71, 157
BsuRI GGCC 1 cut(s) 153
BtgI CCRYGG 2 cut(s) 946, 1291
BtsCI GGATG 2 cut(s) 942, 1333
BtsIMutI CAGTG 2 cut(s) 73, 1026
Cac8I GCNNGC 2 cut(s) 61, 450
CfoI GCGC 2 cut(s) 107, 1255
Csp6I GTAC 5 cut(s) 422, 481, 1057, 1141, 1306
CviAII CATG 8 cut(s) 353, 628, 727, 790, 892, 947, 1315, 1357
CviQI GTAC 5 cut(s) 422, 481, 1057, 1141, 1306
DdeI CTNAG 3 cut(s) 871, 1176, 1412
DpnI GATC 4 cut(s) 73, 159, 1074, 1432
DpnII GATC 4 cut(s) 71, 157, 1072, 1430
DraI TTTAAA 1 cut(s) 94
Eam1104I CTCTTC 1 cut(s) 527
EarI CTCTTC 1 cut(s) 527
Ecl136II GAGCTC 1 cut(s) 870
Eco130I CCWWGG 2 cut(s) 83, 946
Eco24I GRGCYC 1 cut(s) 872
Eco32I GATATC 1 cut(s) 702
Eco53kI GAGCTC 1 cut(s) 870
Eco57I CTGAAG 1 cut(s) 287
EcoICRI GAGCTC 1 cut(s) 870
EcoNI CCTNNNNNAGG 1 cut(s) 1375
EcoRI GAATTC 1 cut(s) 299
EcoRII CCWGG 1 cut(s) 328
EcoRV GATATC 1 cut(s) 702
EcoT14I CCWWGG 2 cut(s) 83, 946
EcoT38I GRGCYC 1 cut(s) 872
ErhI CCWWGG 2 cut(s) 83, 946
FaeI CATG 8 cut(s) 356, 631, 730, 793, 895, 950, 1318, 1360
FalI AAGNNNNNCTT 4 cut(s) 270, 302, 1485, 1517
FaqI GGGAC 1 cut(s) 1278
FatI CATG 8 cut(s) 352, 627, 726, 789, 891, 946, 1314, 1356
FbaI TGATCA 1 cut(s) 1072
Fnu4HI GCNGC 4 cut(s) 108, 689, 914, 1191
FokI GGATG 2 cut(s) 929, 1320
FriOI GRGCYC 1 cut(s) 872
Fsp4HI GCNGC 4 cut(s) 108, 689, 914, 1191
FspBI CTAG 3 cut(s) 84, 504, 981
GlaI GCGC 2 cut(s) 106, 1254
GluI GCNGC 4 cut(s) 108, 689, 914, 1191
HaeII RGCGCY 1 cut(s) 108
HaeIII GGCC 1 cut(s) 153
HapII CCGG 3 cut(s) 484, 843, 1090
HhaI GCGC 2 cut(s) 107, 1255
Hin1II CATG 8 cut(s) 356, 631, 730, 793, 895, 950, 1318, 1360
Hin6I GCGC 2 cut(s) 105, 1253
HinP1I GCGC 2 cut(s) 105, 1253
HincII GTYRAC 2 cut(s) 1012, 1242
HindII GTYRAC 2 cut(s) 1012, 1242
HindIII AAGCTT 1 cut(s) 881
HpaII CCGG 3 cut(s) 484, 843, 1090
HphI GGTGA 2 cut(s) 1007, 1082
Hpy166II GTNNAC 2 cut(s) 1012, 1242
Hpy188I TCNGA 7 cut(s) 20, 76, 202, 229, 554, 1338, 1427
Hpy188III TCNNGA 8 cut(s) 140, 161, 253, 296, 344, 753, 1076, 1442
Hpy8I GTNNAC 2 cut(s) 1012, 1242
HpyAV CCTTC 4 cut(s) 126, 577, 1381, 1523
HpyCH4III ACNGT 7 cut(s) 68, 607, 1030, 1197, 1292, 1305, 1456
HpyCH4IV ACGT 6 cut(s) 258, 1014, 1034, 1043, 1126, 1139
HpyF10VI GCNNNNNNNGC 1 cut(s) 220
HpyF3I CTNAG 3 cut(s) 871, 1176, 1412
HpySE526I ACGT 6 cut(s) 258, 1014, 1034, 1043, 1126, 1139
Hsp92II CATG 8 cut(s) 356, 631, 730, 793, 895, 950, 1318, 1360
HspAI GCGC 2 cut(s) 105, 1253
Ksp22I TGATCA 1 cut(s) 1072
Kzo9I GATC 4 cut(s) 71, 157, 1072, 1430
LmnI GCTCC 2 cut(s) 1024, 1397
Lsp1109I GCAGC 3 cut(s) 94, 925, 1177
LweI GCATC 4 cut(s) 24, 454, 1409, 1492
MaeI CTAG 3 cut(s) 84, 504, 981
MaeII ACGT 6 cut(s) 258, 1014, 1034, 1043, 1126, 1139
MaeIII GTNAC 6 cut(s) 777, 925, 969, 1030, 1127, 1515
MalI GATC 4 cut(s) 73, 159, 1074, 1432
MboI GATC 4 cut(s) 71, 157, 1072, 1430
MboII GAAGA 9 cut(s) 278, 280, 295, 356, 514, 556, 590, 1112, 1440
MfeI CAATTG 1 cut(s) 307
MflI RGATCY 2 cut(s) 71, 157
MhlI GDGCHC 1 cut(s) 872
MluCI AATT 6 cut(s) 44, 299, 307, 548, 1222, 1434
MluI ACGCGT 1 cut(s) 1146
MlyI GAGTC 1 cut(s) 413
MmeI TCCRAC 1 cut(s) 626
MnlI CCTC 7 cut(s) 135, 645, 663, 1176, 1269, 1378, 1449
MroXI GAANNNNTTC 1 cut(s) 548
MseI TTAA 8 cut(s) 24, 93, 885, 933, 1050, 1203, 1479, 1557
MslI CAYNNNNRTG 2 cut(s) 731, 1338
MspCI CTTAAG 2 cut(s) 884, 1478
MspI CCGG 3 cut(s) 484, 843, 1090
MspR9I CCNGG 2 cut(s) 330, 485
MunI CAATTG 1 cut(s) 307
MvaI CCWGG 1 cut(s) 330
MvnI CGCG 1 cut(s) 1148
MwoI GCNNNNNNNGC 1 cut(s) 220
NciI CCSGG 1 cut(s) 485
NcoI CCATGG 1 cut(s) 946
NdeII GATC 4 cut(s) 71, 157, 1072, 1430
NlaIII CATG 8 cut(s) 356, 631, 730, 793, 895, 950, 1318, 1360
NlaIV GGNNCC 2 cut(s) 1020, 1230
NmeAIII GCCGAG 1 cut(s) 81
NmuCI GTSAC 2 cut(s) 1030, 1127
NspI RCATGY 1 cut(s) 1360
PcsI WCGNNNNNNNCGW 3 cut(s) 34, 1040, 1145
PdmI GAANNNNTTC 1 cut(s) 548
PkrI GCNGC 4 cut(s) 109, 690, 915, 1192
PleI GAGTC 1 cut(s) 412
PpsI GAGTC 1 cut(s) 412
Ppu21I YACGTR 1 cut(s) 1035
PshBI ATTAAT 1 cut(s) 1050
Psp124BI GAGCTC 1 cut(s) 872
Psp6I CCWGG 1 cut(s) 328
PspGI CCWGG 1 cut(s) 328
PspN4I GGNNCC 2 cut(s) 1020, 1230
PstI CTGCAG 2 cut(s) 403, 915
PsuI RGATCY 2 cut(s) 71, 157
RsaI GTAC 5 cut(s) 423, 482, 1058, 1142, 1307
RsaNI GTAC 5 cut(s) 422, 481, 1057, 1141, 1306
RseI CAYNNNNRTG 2 cut(s) 731, 1338
SacI GAGCTC 1 cut(s) 872
SaqAI TTAA 8 cut(s) 24, 93, 885, 933, 1050, 1203, 1479, 1557
SatI GCNGC 4 cut(s) 108, 689, 914, 1191
Sau3AI GATC 4 cut(s) 71, 157, 1072, 1430
SchI GAGTC 1 cut(s) 413
ScrFI CCNGG 2 cut(s) 330, 485
SduI GDGCHC 1 cut(s) 872
SfaNI GCATC 4 cut(s) 24, 454, 1409, 1492
SfcI CTRYAG 7 cut(s) 64, 357, 399, 561, 813, 911, 1375
SmiMI CAYNNNNRTG 2 cut(s) 731, 1338
SmlI CTYRAG 4 cut(s) 49, 884, 1404, 1478
SmoI CTYRAG 4 cut(s) 49, 884, 1404, 1478
Sse9I AATT 6 cut(s) 44, 299, 307, 548, 1222, 1434
SsiI CCGC 4 cut(s) 385, 688, 691, 1007
SspMI CTAG 3 cut(s) 84, 504, 981
SstI GAGCTC 1 cut(s) 872
StyD4I CCNGG 2 cut(s) 328, 483
StyI CCWWGG 2 cut(s) 83, 946
TaaI ACNGT 7 cut(s) 68, 607, 1030, 1197, 1292, 1305, 1456
TaiI ACGT 6 cut(s) 261, 1017, 1037, 1046, 1129, 1142
TaqI TCGA 1 cut(s) 1212
TasI AATT 6 cut(s) 44, 299, 307, 548, 1222, 1434
TatI WGTACW 2 cut(s) 421, 1305
TauI GCSGC 1 cut(s) 691
Tru1I TTAA 8 cut(s) 24, 93, 885, 933, 1050, 1203, 1479, 1557
Tru9I TTAA 8 cut(s) 24, 93, 885, 933, 1050, 1203, 1479, 1557
TscAI CASTG 2 cut(s) 73, 1033
TseFI GTSAC 2 cut(s) 1030, 1127
TseI GCWGC 3 cut(s) 107, 913, 1190
Tsp45I GTSAC 2 cut(s) 1030, 1127
TspDTI ATGAA 8 cut(s) 231, 596, 624, 980, 1016, 1113, 1356, 1448
TspRI CASTG 2 cut(s) 73, 1033
Vha464I CTTAAG 2 cut(s) 884, 1478
VspI ATTAAT 1 cut(s) 1050
XagI CCTNNNNNAGG 1 cut(s) 1375
XapI RAATTY 3 cut(s) 299, 548, 1222
XceI RCATGY 1 cut(s) 1360
XmaJI CCTAGG 1 cut(s) 83
XmnI GAANNNNTTC 1 cut(s) 548
XspI CTAG 3 cut(s) 84, 504, 981
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.