FvH4_6g40750

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
32186603 .. 32189499
2897 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g40750.t1

Sequence Viewer

Length: 1620 bp
ATGAATAAACTCCCATTACGTCAAATTTCAATCTTGCCCACTTCAATTCCTAAAGAACCCACCTTTACAAAACCCTCAGTTTATGTGAAACTGGAAACAAGGAATTGGAACCCAATTCCTATTCCCCACAGAACCATTCCTGAACCCAAAGGCCAAGACCTTGATTTTGTTAATGTTGTAAACAGCCATTTGATTCACTCTGACTGGGCCAAGCTCAACTCTTTAGCCAATGGTCTAACTGCTTTCAGAGTGAAACATGTTTTCCTGAAAGTTCAGAAAGACTATGTTGTTTCCCTTGAGTTTTTCAACTGGGTTGGAACTCACAAACCGACTTCACTTACCCTCGAAACACATTCCATGATTCTCCACATTCTCACCAAGTATCGAAAGTTCAAGTCTGCCGAGTCGATTTTGAGGAAGATTCTTGTGCCAGGGAACATAGACTTGCCTTCCAAGCTGTTTGAGGCGATACTGTATTCGTACCGCTCGTGTGATTCCTCTCCTCGGGTTTTTGACTCGCTTTTCAAGACATTTGCGCATATGAAGAAGTTTAGGAATGCCACAGACACGTTTTGTAGGATGAAGGATTATGGGTTTTACCCGACGGTTGAGTCTTGCAATGCATATGTGAGCTCATTGCTTGATTTGAATAGAGCTGATGTTGCTTTGGCGTTCTATAGAGAAATGAGGCGGTGTCGGATTTCACCAAATGTTTATACTCTTAATATGGTTATGTGTGCTTACTGTAGAGTGGGGAAATTAGAGAATGCTGTTGAGGTCCTTGAGAAGATGGAGAGCATGGGTTTCAGTGCCACCGTTGTGTCGTATAATACACTGATTGCAGGACATTGCAATAAGGGTCTTCTGAGTTCTGCTGTGAAGTTCAAAAACTTGATGGTGAAGAATGGATTGCACCCGAGTGTGGTAACTTTTAACACGCTTATTGATGGGTTCTGTAAGCAAGGTAAACTACCAGAAGCAAATATAATTTTTAGTGAGATGAAAGCTGCAAATGTGGCTCCTAATACAGTAACCTATAATACCCTGATAAATGGGTATGGTCAAGCAGGTAATAGTGAGATGGGTAGTAGGCTTTTTGAGGAGATGTCGAAGAATCGAGTAAGTGCTGATATTCTGACTTATAATGGACTGATTTTGGGACTATGCAAGGAGGGTAAAACGAAGAAAGCTGCATATCTGGTAAAAGAGCTTGACAGTAAGAACTTTGTCCCAAATGCCTCAACCTTTTCTGCCCTTGTTGGTGGGGAGTGTGTGAGAAAGAACTCAGATCGTGCTTTTCTGTTGTATAAAAGCATGGTCAGGAGCGGCTATCATCCTGATGAACATACTTTTAAGATGTTGTTGTCTAGTTTTTGCAATAATAGGGATTTTGATGGAGCAGTGGAAATCTTGAAAGAAATGTTTGAGAGAAATTTTGTTCCTGATTCAGATATCGTATCTGATCTTTGTCTGGGACTTAGACGTTGCGGGAAAGGAAAATTGGTAGAATTGCTATGCCGAGAGATGGAATCTAGACGCCTCATACCTCAAGATTTTGACATGGCTAAGATTATCTGCTGTGGAGAAGAGAATGAGAATGCAGAAGTAGGAAACATGTAA

Protein Analysis

540

Amino Acids

60.93

Weight (kDa)

9.03

Isoelectric Point (pI)

34.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 182 - 280 6.8e-07 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 201 - 245 1.8e-06 PPR repeat family
PPR_3 PF13812 227 - 280 9.5e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 234 - 265 9.8e-09 PPR repeat
PPR_2 PF13041 236 - 274 2.4e-07 PPR repeat family
PPR PF01535 240 - 269 7.7e-06 PPR repeat
PPR_1 PF12854 267 - 300 1e-07 PPR repeat
PPR_2 PF13041 272 - 320 6.9e-17 PPR repeat family
PPR_3 PF13812 299 - 355 3.2e-13 Pentatricopeptide repeat domain
PPR_long PF17177 301 - 419 1e-05 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 302 - 335 9e-12 PPR repeat
PPR_2 PF13041 306 - 353 2.1e-18 PPR repeat family
PPR PF01535 309 - 338 1.6e-07 PPR repeat
PPR_1 PF12854 338 - 370 7.1e-09 PPR repeat
PPR_2 PF13041 341 - 390 8.2e-16 PPR repeat family
PPR PF01535 344 - 373 3.9e-08 PPR repeat
PPR_long PF17177 365 - 482 1.8e-06 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 374 - 403 6.1e-06 PPR repeat
PPR_2 PF13041 377 - 424 2.9e-09 PPR repeat family
PPR_2 PF13041 419 - 460 5.6e-07 PPR repeat family
PPR_1 PF12854 443 - 474 3.1e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1143
AasI GACNNNNNNGTC 1 cut(s) 610
Acc16I TGCGCA 1 cut(s) 537
Acc36I ACCTGC 1 cut(s) 1058
AccBSI CCGCTC 2 cut(s) 486, 1326
AciI CCGC 4 cut(s) 484, 691, 1326, 1488
AcsI RAATTY 2 cut(s) 24, 1432
AcyI GRCGYC 1 cut(s) 1537
AfaI GTAC 1 cut(s) 482
AfiI CCNNNNNNNGG 3 cut(s) 504, 922, 1525
AflIII ACRYGT 3 cut(s) 256, 567, 1614
AgsI TTSAA 8 cut(s) 30, 45, 307, 394, 526, 649, 886, 1414
AjnI CCWGG 1 cut(s) 430
AjuI GAANNNNNNNTTGG 2 cut(s) 1484, 1516
AleI CACNNNNGTG 2 cut(s) 818, 918
AluBI AGCT 7 cut(s) 214, 457, 633, 656, 1007, 1190, 1210
AluI AGCT 7 cut(s) 214, 457, 633, 656, 1007, 1190, 1210
Alw21I GWGCWC 1 cut(s) 635
Ama87I CYCGRG 2 cut(s) 504, 916
AoxI GGCC 2 cut(s) 151, 207
ApeKI GCWGC 2 cut(s) 1007, 1190
ApoI RAATTY 2 cut(s) 24, 1432
ArsI GACNNNNNNTTYG 2 cut(s) 149, 181
AspLEI GCGC 1 cut(s) 538
AspS9I GGNCC 2 cut(s) 207, 778
AsuHPI GGTGA 3 cut(s) 367, 696, 910
AvaI CYCGRG 2 cut(s) 504, 916
AvaII GGWCC 1 cut(s) 778
BanII GRGCYC 1 cut(s) 635
BauI CACGAG 1 cut(s) 487
BbsI GAAGAC 1 cut(s) 854
Bbv12I GWGCWC 1 cut(s) 635
BbvI GCAGC 2 cut(s) 994, 1177
BccI CCATC 6 cut(s) 784, 889, 941, 1075, 1388, 1519
BciT130I CCWGG 1 cut(s) 432
BfaI CTAG 2 cut(s) 1368, 1533
BfmI CTRYAG 2 cut(s) 676, 745
BfuAI ACCTGC 1 cut(s) 1058
BisI GCNGC 3 cut(s) 1008, 1191, 1327
BlsI GCNGC 3 cut(s) 1009, 1192, 1328
Bme1390I CCNGG 1 cut(s) 432
Bme18I GGWCC 1 cut(s) 778
BmeT110I CYCGRG 2 cut(s) 504, 916
BmgT120I GGNCC 2 cut(s) 207, 778
BmiI GGNNCC 2 cut(s) 110, 1020
BmrFI CCNGG 1 cut(s) 432
BmrI ACTGGG 2 cut(s) 214, 319
BmuI ACTGGG 2 cut(s) 214, 319
BpiI GAAGAC 1 cut(s) 854
BpuEI CTTGAG 3 cut(s) 317, 803, 1533
BsaHI GRCGYC 1 cut(s) 1537
BsaJI CCNNGG 2 cut(s) 431, 503
Bsc4I CCNNNNNNNGG 3 cut(s) 504, 922, 1525
Bse1I ACTGG 3 cut(s) 96, 209, 314
Bse3DI GCAATG 3 cut(s) 625, 635, 847
BseBI CCWGG 1 cut(s) 432
BseDI CCNNGG 2 cut(s) 431, 503
BseGI GGATG 2 cut(s) 585, 1333
BseLI CCNNNNNNNGG 3 cut(s) 504, 922, 1525
BseMI GCAATG 3 cut(s) 625, 635, 847
BseMII CTCAG 3 cut(s) 90, 857, 1299
BseNI ACTGG 3 cut(s) 96, 209, 314
BseRI GAGGAG 2 cut(s) 492, 1115
BseXI GCAGC 2 cut(s) 994, 1177
BshFI GGCC 2 cut(s) 153, 209
BsiHKAI GWGCWC 1 cut(s) 635
BsiHKCI CYCGRG 2 cut(s) 504, 916
BslFI GGGAC 3 cut(s) 1173, 1214, 1488
BslI CCNNNNNNNGG 3 cut(s) 504, 922, 1525
BsmFI GGGAC 3 cut(s) 1173, 1214, 1488
BsmI GAATGC 3 cut(s) 562, 772, 1603
BsnI GGCC 2 cut(s) 153, 209
BsoBI CYCGRG 2 cut(s) 504, 916
Bsp1286I GDGCHC 1 cut(s) 635
Bsp143I GATC 2 cut(s) 1288, 1462
BspACI CCGC 4 cut(s) 484, 691, 1326, 1488
BspANI GGCC 2 cut(s) 153, 209
BspCNI CTCAG 3 cut(s) 89, 858, 1298
BspLI GGNNCC 2 cut(s) 110, 1020
BspMI ACCTGC 1 cut(s) 1058
BsrBI CCGCTC 2 cut(s) 486, 1326
BsrDI GCAATG 3 cut(s) 625, 635, 847
BsrI ACTGG 3 cut(s) 96, 209, 314
BssECI CCNNGG 2 cut(s) 431, 503
BssMI GATC 2 cut(s) 1288, 1462
BssNI GRCGYC 1 cut(s) 1537
BssSI CACGAG 1 cut(s) 487
Bst2BI CACGAG 1 cut(s) 487
Bst2UI CCWGG 1 cut(s) 432
Bst4CI ACNGT 6 cut(s) 474, 607, 746, 817, 1030, 1217
Bst6I CTCTTC 1 cut(s) 1581
BstACI GRCGYC 1 cut(s) 1537
BstDEI CTNAG 5 cut(s) 76, 866, 1285, 1478, 1566
BstF5I GGATG 2 cut(s) 585, 1333
BstHHI GCGC 1 cut(s) 538
BstKTI GATC 2 cut(s) 1291, 1465
BstMBI GATC 2 cut(s) 1288, 1462
BstMWI GCNNNNNNNGC 3 cut(s) 454, 662, 1016
BstNI CCWGG 1 cut(s) 432
BstNSI RCATGY 2 cut(s) 260, 1618
BstSCI CCNGG 1 cut(s) 430
BstSFI CTRYAG 2 cut(s) 676, 745
BstV1I GCAGC 2 cut(s) 994, 1177
BstV2I GAAGAC 1 cut(s) 854
BsuRI GGCC 2 cut(s) 153, 209
BtsCI GGATG 2 cut(s) 585, 1333
BtsI GCAGTG 1 cut(s) 1407
BtsIMutI CAGTG 3 cut(s) 814, 833, 1407
BveI ACCTGC 1 cut(s) 1058
CfoI GCGC 1 cut(s) 538
Cfr13I GGNCC 2 cut(s) 207, 778
CseI GACGC 1 cut(s) 1545
Csp6I GTAC 1 cut(s) 481
CviAII CATG 6 cut(s) 257, 358, 799, 1315, 1561, 1615
CviQI GTAC 1 cut(s) 481
DdeI CTNAG 5 cut(s) 76, 866, 1285, 1478, 1566
DpnI GATC 2 cut(s) 1290, 1464
DpnII GATC 2 cut(s) 1288, 1462
DrdI GACNNNNNNGTC 1 cut(s) 610
DseDI GACNNNNNNGTC 1 cut(s) 610
Eam1104I CTCTTC 1 cut(s) 1581
EarI CTCTTC 1 cut(s) 1581
Ecl136II GAGCTC 1 cut(s) 633
Eco24I GRGCYC 1 cut(s) 635
Eco32I GATATC 1 cut(s) 1453
Eco47I GGWCC 1 cut(s) 778
Eco53kI GAGCTC 1 cut(s) 633
Eco88I CYCGRG 2 cut(s) 504, 916
EcoICRI GAGCTC 1 cut(s) 633
EcoO109I RGGNCCY 1 cut(s) 778
EcoRII CCWGG 1 cut(s) 430
EcoRV GATATC 1 cut(s) 1453
EcoT22I ATGCAT 1 cut(s) 625
EcoT38I GRGCYC 1 cut(s) 635
FaeI CATG 6 cut(s) 260, 361, 802, 1318, 1564, 1618
FaqI GGGAC 3 cut(s) 1173, 1214, 1488
FatI CATG 6 cut(s) 256, 357, 798, 1314, 1560, 1614
FauI CCCGC 1 cut(s) 1481
FauNDI CATATG 2 cut(s) 540, 625
Fnu4HI GCNGC 3 cut(s) 1008, 1191, 1327
FokI GGATG 2 cut(s) 592, 1320
FriOI GRGCYC 1 cut(s) 635
Fsp4HI GCNGC 3 cut(s) 1008, 1191, 1327
FspBI CTAG 2 cut(s) 1368, 1533
FspI TGCGCA 1 cut(s) 537
GlaI GCGC 1 cut(s) 537
GluI GCNGC 3 cut(s) 1008, 1191, 1327
HaeIII GGCC 2 cut(s) 153, 209
HgaI GACGC 1 cut(s) 1545
HhaI GCGC 1 cut(s) 538
Hin1I GRCGYC 1 cut(s) 1537
Hin1II CATG 6 cut(s) 260, 361, 802, 1318, 1564, 1618
Hin6I GCGC 1 cut(s) 536
HinP1I GCGC 1 cut(s) 536
HphI GGTGA 3 cut(s) 367, 696, 910
Hpy166II GTNNAC 2 cut(s) 181, 968
Hpy188I TCNGA 9 cut(s) 202, 248, 276, 699, 867, 1137, 1288, 1450, 1462
Hpy188III TCNNGA 9 cut(s) 140, 265, 526, 1321, 1337, 1411, 1442, 1533, 1550
Hpy8I GTNNAC 2 cut(s) 181, 968
Hpy99I CGWCG 1 cut(s) 607
HpyAV CCTTC 2 cut(s) 459, 577
HpyCH4III ACNGT 6 cut(s) 474, 607, 746, 817, 1030, 1217
HpyCH4IV ACGT 3 cut(s) 19, 569, 1483
HpyF10VI GCNNNNNNNGC 3 cut(s) 454, 662, 1016
HpyF3I CTNAG 5 cut(s) 76, 866, 1285, 1478, 1566
HpySE526I ACGT 3 cut(s) 19, 569, 1483
Hsp92I GRCGYC 1 cut(s) 1537
Hsp92II CATG 6 cut(s) 260, 361, 802, 1318, 1564, 1618
HspAI GCGC 1 cut(s) 536
Kzo9I GATC 2 cut(s) 1288, 1462
LmnI GCTCC 3 cut(s) 1024, 1323, 1397
Lsp1109I GCAGC 2 cut(s) 994, 1177
MaeI CTAG 2 cut(s) 1368, 1533
MaeII ACGT 3 cut(s) 19, 569, 1483
MaeIII GTNAC 2 cut(s) 925, 1030
MalI GATC 2 cut(s) 1290, 1464
MbiI CCGCTC 2 cut(s) 486, 1326
MboI GATC 2 cut(s) 1288, 1462
MboII GAAGA 8 cut(s) 430, 556, 799, 854, 913, 1123, 1195, 1598
MhlI GDGCHC 1 cut(s) 635
MluCI AATT 9 cut(s) 24, 45, 103, 114, 758, 987, 1432, 1499, 1508
MlyI GAGTC 3 cut(s) 413, 509, 620
MmeI TCCRAC 2 cut(s) 295, 677
Mph1103I ATGCAT 1 cut(s) 625
MseI TTAA 4 cut(s) 171, 723, 933, 1353
MslI CAYNNNNRTG 3 cut(s) 818, 918, 1338
MspR9I CCNGG 1 cut(s) 432
Mva1269I GAATGC 3 cut(s) 562, 772, 1603
MvaI CCWGG 1 cut(s) 432
MwoI GCNNNNNNNGC 3 cut(s) 454, 662, 1016
NdeI CATATG 2 cut(s) 540, 625
NdeII GATC 2 cut(s) 1288, 1462
NlaIII CATG 6 cut(s) 260, 361, 802, 1318, 1564, 1618
NlaIV GGNNCC 2 cut(s) 110, 1020
NmeAIII GCCGAG 2 cut(s) 427, 1544
NsbI TGCGCA 1 cut(s) 537
NsiI ATGCAT 1 cut(s) 625
NspI RCATGY 2 cut(s) 260, 1618
OliI CACNNNNGTG 2 cut(s) 818, 918
PciI ACATGT 2 cut(s) 256, 1614
PcsI WCGNNNNNNNCGW 1 cut(s) 485
PctI GAATGC 3 cut(s) 562, 772, 1603
PfeI GAWTC 7 cut(s) 193, 361, 421, 494, 1114, 1445, 1529
PkrI GCNGC 3 cut(s) 1009, 1192, 1328
PleI GAGTC 3 cut(s) 412, 509, 619
PpsI GAGTC 3 cut(s) 412, 509, 619
PpuMI RGGWCCY 1 cut(s) 778
PscI ACATGT 2 cut(s) 256, 1614
PsiI TTATAA 1 cut(s) 1143
Psp124BI GAGCTC 1 cut(s) 635
Psp5II RGGWCCY 1 cut(s) 778
Psp6I CCWGG 1 cut(s) 430
PspGI CCWGG 1 cut(s) 430
PspN4I GGNNCC 2 cut(s) 110, 1020
PspPI GGNCC 2 cut(s) 207, 778
PspPPI RGGWCCY 1 cut(s) 778
PsrI GAACNNNNNNTAC 2 cut(s) 374, 406
RsaI GTAC 1 cut(s) 482
RsaNI GTAC 1 cut(s) 481
RseI CAYNNNNRTG 3 cut(s) 818, 918, 1338
SacI GAGCTC 1 cut(s) 635
SaqAI TTAA 4 cut(s) 171, 723, 933, 1353
SatI GCNGC 3 cut(s) 1008, 1191, 1327
Sau3AI GATC 2 cut(s) 1288, 1462
Sau96I GGNCC 2 cut(s) 207, 778
SchI GAGTC 3 cut(s) 413, 509, 620
ScrFI CCNGG 1 cut(s) 432
SduI GDGCHC 1 cut(s) 635
SfcI CTRYAG 2 cut(s) 676, 745
SinI GGWCC 1 cut(s) 778
SmiMI CAYNNNNRTG 3 cut(s) 818, 918, 1338
SmlI CTYRAG 3 cut(s) 296, 782, 1548
SmoI CTYRAG 3 cut(s) 296, 782, 1548
Sse9I AATT 9 cut(s) 24, 45, 103, 114, 758, 987, 1432, 1499, 1508
SsiI CCGC 4 cut(s) 484, 691, 1326, 1488
SspMI CTAG 2 cut(s) 1368, 1533
SstI GAGCTC 1 cut(s) 635
StyD4I CCNGG 1 cut(s) 430
TaaI ACNGT 6 cut(s) 474, 607, 746, 817, 1030, 1217
TaiI ACGT 3 cut(s) 22, 572, 1486
TaqI TCGA 5 cut(s) 345, 385, 407, 1109, 1117
TasI AATT 9 cut(s) 24, 45, 103, 114, 758, 987, 1432, 1499, 1508
TauI GCSGC 1 cut(s) 1329
TfiI GAWTC 7 cut(s) 193, 361, 421, 494, 1114, 1445, 1529
Tru1I TTAA 4 cut(s) 171, 723, 933, 1353
Tru9I TTAA 4 cut(s) 171, 723, 933, 1353
TscAI CASTG 3 cut(s) 814, 840, 1407
TseI GCWGC 2 cut(s) 1007, 1190
TspDTI ATGAA 5 cut(s) 17, 557, 596, 1016, 1356
TspRI CASTG 3 cut(s) 814, 840, 1407
VpaK11BI GGWCC 1 cut(s) 778
XapI RAATTY 2 cut(s) 24, 1432
XbaI TCTAGA 1 cut(s) 1532
XceI RCATGY 2 cut(s) 260, 1618
XspI CTAG 2 cut(s) 1368, 1533
Zsp2I ATGCAT 1 cut(s) 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.