Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008589

Physical Location & Seq

Genomic Coordinates Reverse (-)

20841605 .. 20843966

Gene Structure 2362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G199000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1602 bp

ATGAACAAATTCCCATTTCGTCAGTTTTCTAGTTTGCCCAATTCAATTGCAAAAGAACCCACCTTTACAAACCCCACAACTTGTGGGAAATTTGGAAAAAGGAATTGGAATCCACTTCCTATTCCCCACAGAACAATTCCTGAACCCAAAGGGCAGGACCTTGATTTTGTGAATGTTGCAAACAGCCATCTAATTCACTCTGACTGGGCTAAGCTCAATTCCTTGTCCAATGGTCTAACTGCTTTCAGAGTGAAACATATACTGCTAAAGCTTAAGCAGGACTATGTTCTTTCCCTTGAGTTTTTCAATTGGGTTGCAGCTCAAAACCCCACTTCACTTACCCTTGAAACACACTCCATGATTCTCCACATTCTCACCAAATACAGGAAGTTCAAGTCTGCAGAGTCTATTTTGAGAAAGGTTCTTGTCTCGGGTTCGATAGATTTGCCTTCCAAGTTGTTTGAAGCAATATTGTATTCGTACCGCTTGTGTGATTCTTCTCCTCGTGTTTTCGATTCTCTTTTCAAGACTTTTGCGCATATGAAGAAATTTAGGAATGCCACACACATATTTTGTCAGATGAAGGATTATGGGTTCTTCCCAACAGTAGAGTCTTGCAATGCATATCTGAGCTCGTTGCTTGATTTACATAGAGCTGATATTGCTTTGGTATTCTATAGAGAAATTCAGCGTTGTAGGATTTCACCGAATGTTTATACTCTTAATATGGTTATATCTGCTTATTGTAAATTGGGAAAATTTGAGAACGCTGTTGAGGTCCTTGAGAAGATGGACAGCATGGGTTTTAGTCCTACAGTTGTATCATATAACACGCTGATTGCAGGACACTGTGATAAGGGTCTTCTGAGTTCGGCTTTGAAGTTCAAAAACTTGATGGCGAAGAATGGATTGCACCCGAGTGTGGTTACTTTTAACTCACTTATTGATGGGTTTTGCAAAGAAGGAAAACTAAAGGAAGCAAACAGAATTTTTAATGAGATGAAAGCCGTGAATGTTGCTCCTGATACCGTAACTTACAATACTTTGATAAAAGGGTACAGCCAAGAAGGTAATAGCGAGATGGGCAATAGGCTTTTTGAGGAGATGTCAAGGAATCAAGTAAATGCTACTATCGTGACTTATAATGCATTGATATTGGGACTCTGCAAGGAGGGTAAAACAAAGAAAGCTGCACATCTGGTTAAAGAACTTGATAGAAAGCGCTTTGTCCCAAATGCCTCAACCTTTTCTGCCCTTATTGAGGGGCAATGTGTGAGAAAGAACTCGGATCATGCCTTCAAGTTATGTAAAAGCATGATAAGGAGTGGTTATCATCCCGATGAGCATACTTTTAACATGCTGATATCTAGCTTCTGCAATAACAGGGATTTTGATGGAGCAGTTGAAGTCTTGAAAGAAATGTTTGATAGATCTTTTGCTCTTGATTCAAGCATCTTATCTGATTTATGTCAAGGACTATGCAGATGCGGGAACGAGAAAATGGTAAAATTGTTATGCAGTGAAATGGAAGCTAGACGCCTCATCCCTCAAGGTTTTGACATGGCAAAAATTCTCTCCCCTGTAGTAGTGGAAGAATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090615 GO:0090617 GO:0097159 GO:0140053 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

534

Amino Acids

60.42

Weight (kDa)

9.08

Isoelectric Point (pI)

33.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26680 AT4G26680
fragaria_vesca	FvH4_6g40750
malus_domestica	MD17G1115600.v1.1
prunus_persica	Prupe.3G199000_v2.0.a1 Prupe.3G199000_v2.0.a1
pyrus_communis	pycom17g10680
rosa_chinensis	RchiOBHm_Chr2g0156201 RchiOBHm_Chr4g0385191
rosa_laevigata	RLG00000010250 RLG00000020895
rosa_multiflora	Rmu_sc0000260.1_g000011 Rmu_sc0003086.1_g000003
rosa_roxburghii	Rroxscaffold_2G00093150 Rroxscaffold_5G00333090
rosa_rugosa	Rorug02G0452500
rosa_samantha	Rh2AG519000 Rh2BG530400 Rh2CG504000 Rh2DG539400 Rh4CG003600
rosa_wichuraiana	Rw2G042750 Rw4G000590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1143
Acc16I	TGCGCA	1 cut(s)	537
AciI	CCGC	2 cut(s)	484, 1488
AclWI	GGATC	1 cut(s)	1296
AcsI	RAATTY	7 cut(s)	8, 89, 548, 684, 758, 987, 1569
AcyI	GRCGYC	1 cut(s)	1537
AfaI	GTAC	2 cut(s)	482, 1058
AfeI	AGCGCT	1 cut(s)	1223
AfiI	CCNNNNNNNGG	3 cut(s)	384, 922, 1261
AflII	CTTAAG	1 cut(s)	272
AjuI	GAANNNNNNNTTGG	2 cut(s)	88, 120
AleI	CACNNNNGTG	1 cut(s)	918
AloI	GAACNNNNNNTCC	2 cut(s)	578, 610
AluBI	AGCT	8 cut(s)	214, 271, 320, 633, 656, 1190, 1371, 1532
AluI	AGCT	8 cut(s)	214, 271, 320, 633, 656, 1190, 1371, 1532
Alw21I	GWGCWC	1 cut(s)	635
Alw26I	GTCTC	1 cut(s)	433
AlwI	GGATC	1 cut(s)	1296
Ama87I	CYCGRG	2 cut(s)	430, 916
Aor51HI	AGCGCT	1 cut(s)	1223
ApeKI	GCWGC	2 cut(s)	317, 1190
ApoI	RAATTY	7 cut(s)	8, 89, 548, 684, 758, 987, 1569
ArsI	GACNNNNNNTTYG	2 cut(s)	149, 181
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	2 cut(s)	538, 1224
AspS9I	GGNCC	2 cut(s)	157, 778
AsuHPI	GGTGA	2 cut(s)	367, 696
AvaI	CYCGRG	2 cut(s)	430, 916
AvaII	GGWCC	2 cut(s)	157, 778
BaeI	ACNNNNGTAYC	2 cut(s)	804, 837
BanII	GRGCYC	1 cut(s)	635
BauI	CACGAG	1 cut(s)	504
BbsI	GAAGAC	1 cut(s)	854
Bbv12I	GWGCWC	1 cut(s)	635
BbvI	GCAGC	2 cut(s)	329, 1177
BccI	CCATC	6 cut(s)	195, 784, 889, 941, 1075, 1388
BceAI	ACGGC	1 cut(s)	992
BcgI	CGANNNNNNTGC	2 cut(s)	427, 461
BcoDI	GTCTC	1 cut(s)	433
BfaI	CTAG	3 cut(s)	30, 1368, 1533
BfmI	CTRYAG	4 cut(s)	399, 676, 813, 1581
BfoI	RGCGCY	1 cut(s)	1225
BfrI	CTTAAG	1 cut(s)	272
BglII	AGATCT	1 cut(s)	1430
BisI	GCNGC	2 cut(s)	318, 1191
BlpI	GCTNAGC	1 cut(s)	210
BlsI	GCNGC	2 cut(s)	319, 1192
Bme18I	GGWCC	2 cut(s)	157, 778
BmeT110I	CYCGRG	2 cut(s)	430, 916
BmgT120I	GGNCC	2 cut(s)	157, 778
BmrI	ACTGGG	1 cut(s)	214
BmsI	GCATC	2 cut(s)	1461, 1475
BmuI	ACTGGG	1 cut(s)	214
BpiI	GAAGAC	1 cut(s)	854
Bpu1102I	GCTNAGC	1 cut(s)	210
BpuEI	CTTGAG	3 cut(s)	317, 803, 1533
BsaHI	GRCGYC	1 cut(s)	1537
Bsc4I	CCNNNNNNNGG	3 cut(s)	384, 922, 1261
Bse1I	ACTGG	1 cut(s)	209
Bse3DI	GCAATG	2 cut(s)	625, 1274
BseGI	GGATG	2 cut(s)	1333, 1542
BseLI	CCNNNNNNNGG	3 cut(s)	384, 922, 1261
BseMI	GCAATG	2 cut(s)	625, 1274
BseMII	CTCAG	2 cut(s)	620, 857
BseNI	ACTGG	1 cut(s)	209
BseRI	GAGGAG	2 cut(s)	492, 1115
BseXI	GCAGC	2 cut(s)	329, 1177
BsgI	GTGCAG	1 cut(s)	1176
BsiHKAI	GWGCWC	1 cut(s)	635
BsiHKCI	CYCGRG	2 cut(s)	430, 916
BslFI	GGGAC	2 cut(s)	1173, 1214
BslI	CCNNNNNNNGG	3 cut(s)	384, 922, 1261
BsmAI	GTCTC	1 cut(s)	433
BsmFI	GGGAC	2 cut(s)	1173, 1214
BsmI	GAATGC	1 cut(s)	562
BsoBI	CYCGRG	2 cut(s)	430, 916
Bsp1286I	GDGCHC	1 cut(s)	635
Bsp143I	GATC	2 cut(s)	1288, 1430
Bsp1720I	GCTNAGC	1 cut(s)	210
BspACI	CCGC	2 cut(s)	484, 1488
BspCNI	CTCAG	2 cut(s)	621, 858
BspMAI	CTGCAG	1 cut(s)	403
BspPI	GGATC	1 cut(s)	1296
BspTI	CTTAAG	1 cut(s)	272
BsrDI	GCAATG	2 cut(s)	625, 1274
BsrI	ACTGG	1 cut(s)	209
BssMI	GATC	2 cut(s)	1288, 1430
BssNI	GRCGYC	1 cut(s)	1537
BssSI	CACGAG	1 cut(s)	504
Bst2BI	CACGAG	1 cut(s)	504
Bst4CI	ACNGT	4 cut(s)	607, 817, 851, 1030
BstACI	GRCGYC	1 cut(s)	1537
BstAFI	CTTAAG	1 cut(s)	272
BstDEI	CTNAG	3 cut(s)	210, 629, 866
BstENI	CCTNNNNNAGG	1 cut(s)	1259
BstF5I	GGATG	2 cut(s)	1333, 1542
BstH2I	RGCGCY	1 cut(s)	1225
BstHHI	GCGC	2 cut(s)	538, 1224
BstKTI	GATC	2 cut(s)	1291, 1433
BstMAI	GTCTC	1 cut(s)	433
BstMBI	GATC	2 cut(s)	1288, 1430
BstMWI	GCNNNNNNNGC	2 cut(s)	662, 1083
BstNSI	RCATGY	1 cut(s)	1360
BstSFI	CTRYAG	4 cut(s)	399, 676, 813, 1581
BstV1I	GCAGC	2 cut(s)	329, 1177
BstV2I	GAAGAC	1 cut(s)	854
BstX2I	RGATCY	1 cut(s)	1430
BstYI	RGATCY	1 cut(s)	1430
BtsCI	GGATG	2 cut(s)	1333, 1542
BtsI	GCAGTG	1 cut(s)	1525
BtsIMutI	CAGTG	2 cut(s)	847, 1525
CfoI	GCGC	2 cut(s)	538, 1224
Cfr13I	GGNCC	2 cut(s)	157, 778
CseI	GACGC	1 cut(s)	1545
Csp6I	GTAC	2 cut(s)	481, 1057
CviAII	CATG	6 cut(s)	358, 799, 1292, 1315, 1357, 1561
CviQI	GTAC	2 cut(s)	481, 1057
DdeI	CTNAG	3 cut(s)	210, 629, 866
DpnI	GATC	2 cut(s)	1290, 1432
DpnII	GATC	2 cut(s)	1288, 1430
Ecl136II	GAGCTC	1 cut(s)	633
Eco24I	GRGCYC	1 cut(s)	635
Eco32I	GATATC	1 cut(s)	1365
Eco47I	GGWCC	2 cut(s)	157, 778
Eco47III	AGCGCT	1 cut(s)	1223
Eco53kI	GAGCTC	1 cut(s)	633
Eco88I	CYCGRG	2 cut(s)	430, 916
EcoICRI	GAGCTC	1 cut(s)	633
EcoNI	CCTNNNNNAGG	1 cut(s)	1259
EcoO109I	RGGNCCY	2 cut(s)	157, 778
EcoRV	GATATC	1 cut(s)	1365
EcoT22I	ATGCAT	2 cut(s)	625, 1150
EcoT38I	GRGCYC	1 cut(s)	635
FaeI	CATG	6 cut(s)	361, 802, 1295, 1318, 1360, 1564
FaqI	GGGAC	2 cut(s)	1173, 1214
FatI	CATG	6 cut(s)	357, 798, 1291, 1314, 1356, 1560
FauI	CCCGC	1 cut(s)	1481
FauNDI	CATATG	1 cut(s)	540
Fnu4HI	GCNGC	2 cut(s)	318, 1191
FokI	GGATG	2 cut(s)	1320, 1529
FriOI	GRGCYC	1 cut(s)	635
Fsp4HI	GCNGC	2 cut(s)	318, 1191
FspBI	CTAG	3 cut(s)	30, 1368, 1533
FspI	TGCGCA	1 cut(s)	537
GlaI	GCGC	2 cut(s)	537, 1223
GluI	GCNGC	2 cut(s)	318, 1191
HaeII	RGCGCY	1 cut(s)	1225
HgaI	GACGC	1 cut(s)	1545
HhaI	GCGC	2 cut(s)	538, 1224
Hin1I	GRCGYC	1 cut(s)	1537
Hin1II	CATG	6 cut(s)	361, 802, 1295, 1318, 1360, 1564
Hin6I	GCGC	2 cut(s)	536, 1222
HinP1I	GCGC	2 cut(s)	536, 1222
HindIII	AAGCTT	1 cut(s)	269
HinfI	GANTC	9 cut(s)	109, 361, 404, 494, 515, 611, 1114, 1161, 1445
HphI	GGTGA	2 cut(s)	367, 696
Hpy188I	TCNGA	7 cut(s)	202, 248, 579, 630, 867, 1288, 1462
Hpy188III	TCNNGA	7 cut(s)	140, 526, 1022, 1135, 1337, 1411, 1442
HpyAV	CCTTC	5 cut(s)	459, 577, 956, 1061, 1306
HpyCH4III	ACNGT	4 cut(s)	607, 817, 851, 1030
HpyF10VI	GCNNNNNNNGC	2 cut(s)	662, 1083
HpyF3I	CTNAG	3 cut(s)	210, 629, 866
Hsp92I	GRCGYC	1 cut(s)	1537
Hsp92II	CATG	6 cut(s)	361, 802, 1295, 1318, 1360, 1564
HspAI	GCGC	2 cut(s)	536, 1222
Kzo9I	GATC	2 cut(s)	1288, 1430
LmnI	GCTCC	2 cut(s)	1024, 1397
Lsp1109I	GCAGC	2 cut(s)	329, 1177
LweI	GCATC	2 cut(s)	1461, 1475
MaeI	CTAG	3 cut(s)	30, 1368, 1533
MaeIII	GTNAC	3 cut(s)	925, 1030, 1135
MalI	GATC	2 cut(s)	1290, 1432
MboI	GATC	2 cut(s)	1288, 1430
MboII	GAAGA	6 cut(s)	489, 556, 589, 799, 854, 913
MfeI	CAATTG	2 cut(s)	45, 307
MflI	RGATCY	1 cut(s)	1430
MhlI	GDGCHC	1 cut(s)	635
MlyI	GAGTC	3 cut(s)	413, 620, 1155
MnlI	CCTC	8 cut(s)	513, 769, 1093, 1165, 1249, 1255, 1550, 1557
Mph1103I	ATGCAT	2 cut(s)	625, 1150
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	6 cut(s)	273, 723, 933, 993, 1203, 1353
MslI	CAYNNNNRTG	2 cut(s)	918, 1338
MspCI	CTTAAG	1 cut(s)	272
MunI	CAATTG	2 cut(s)	45, 307
Mva1269I	GAATGC	1 cut(s)	562
MwoI	GCNNNNNNNGC	2 cut(s)	662, 1083
NdeI	CATATG	1 cut(s)	540
NdeII	GATC	2 cut(s)	1288, 1430
NlaIII	CATG	6 cut(s)	361, 802, 1295, 1318, 1360, 1564
NmuCI	GTSAC	1 cut(s)	1135
NsbI	TGCGCA	1 cut(s)	537
NsiI	ATGCAT	2 cut(s)	625, 1150
NspI	RCATGY	1 cut(s)	1360
OliI	CACNNNNGTG	1 cut(s)	918
PctI	GAATGC	1 cut(s)	562
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	6 cut(s)	109, 361, 494, 515, 1114, 1445
PkrI	GCNGC	2 cut(s)	319, 1192
PleI	GAGTC	3 cut(s)	412, 619, 1155
PpsI	GAGTC	3 cut(s)	412, 619, 1155
PpuMI	RGGWCCY	2 cut(s)	157, 778
PsiI	TTATAA	1 cut(s)	1143
Psp124BI	GAGCTC	1 cut(s)	635
Psp5II	RGGWCCY	2 cut(s)	157, 778
PspPI	GGNCC	2 cut(s)	157, 778
PspPPI	RGGWCCY	2 cut(s)	157, 778
PstI	CTGCAG	1 cut(s)	403
PsuI	RGATCY	1 cut(s)	1430
RsaI	GTAC	2 cut(s)	482, 1058
RsaNI	GTAC	2 cut(s)	481, 1057
RseI	CAYNNNNRTG	2 cut(s)	918, 1338
SacI	GAGCTC	1 cut(s)	635
SaqAI	TTAA	6 cut(s)	273, 723, 933, 993, 1203, 1353
SatI	GCNGC	2 cut(s)	318, 1191
Sau3AI	GATC	2 cut(s)	1288, 1430
Sau96I	GGNCC	2 cut(s)	157, 778
SchI	GAGTC	3 cut(s)	413, 620, 1155
SduI	GDGCHC	1 cut(s)	635
SfaNI	GCATC	2 cut(s)	1461, 1475
SfcI	CTRYAG	4 cut(s)	399, 676, 813, 1581
SinI	GGWCC	2 cut(s)	157, 778
SmiMI	CAYNNNNRTG	2 cut(s)	918, 1338
SmlI	CTYRAG	4 cut(s)	272, 296, 782, 1548
SmoI	CTYRAG	4 cut(s)	272, 296, 782, 1548
SsiI	CCGC	2 cut(s)	484, 1488
SspI	AATATT	1 cut(s)	471
SspMI	CTAG	3 cut(s)	30, 1368, 1533
SstI	GAGCTC	1 cut(s)	635
TaaI	ACNGT	4 cut(s)	607, 817, 851, 1030
TaqI	TCGA	2 cut(s)	437, 513
TfiI	GAWTC	6 cut(s)	109, 361, 494, 515, 1114, 1445
Tru1I	TTAA	6 cut(s)	273, 723, 933, 993, 1203, 1353
Tru9I	TTAA	6 cut(s)	273, 723, 933, 993, 1203, 1353
TscAI	CASTG	2 cut(s)	854, 1525
TseFI	GTSAC	1 cut(s)	1135
TseI	GCWGC	2 cut(s)	317, 1190
Tsp45I	GTSAC	1 cut(s)	1135
TspDTI	ATGAA	4 cut(s)	17, 557, 596, 1016
TspRI	CASTG	2 cut(s)	854, 1525
Vha464I	CTTAAG	1 cut(s)	272
VpaK11BI	GGWCC	2 cut(s)	157, 778
XagI	CCTNNNNNAGG	1 cut(s)	1259
XapI	RAATTY	7 cut(s)	8, 89, 548, 684, 758, 987, 1569
XceI	RCATGY	1 cut(s)	1360
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	3 cut(s)	30, 1368, 1533
Zsp2I	ATGCAT	2 cut(s)	625, 1150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.