Rw4G000590

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
1225159 .. 1226769
1611 bp
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UTR
Exon/CDS
Intron
Rw4G000590.1

Sequence Viewer

Length: 1611 bp
ATGAATAAACTCCCATTTCGTCAAGTTTCAATCTTGCCCAATTCAATTGCTAAAGAACCCACCTTTACAAAACCCTCAGTTTCTGTGAATTTGGAAACAAGGAATTGGAATCCAATTCCTATTCCCCACAGAACAATTCCTGAACCCAAAGGCCAAGACCTTGATTTTGTTAATGTTGTAAACAGCCATTTGATTCACTCTGACTGGGCTAAGCTTGTTTCCTTAGCCAATGGTCTGACTGCTTTCAGAGTGAAACATATTTTGCTGAAAATTCAGAAGGATTATGTTCTTTCTCTTGAGTTTTTCAACTGGGTTGGAACTCACAAACCCACTTCACATACCCTCGAAACACATTCCATGATCCTCCACATTCTCACCAAGTATCGAAAATTTAAGTCTGCAGAGTCGATTTTGAGAAAGATTCTTGTGCCAGGGTCCATAGACTTGCCCCCCAAGCTGTTTGAAGCGATACTGTATTCGTACCGCTTGTGTGATTCCTCTCCTCGGGTTTTTGATTCGCTTTTCAAGACGTTTGCGCATATGAAGAAGTTTAGGAATGCCACAGACACGTTTTGTAGAATGAAGGATTACGGGTTTTACCCGACGGTTGAGTCATGCAATGCGTATTTGAGCTCATTGCTTGGTTTACATAGAGCTGATGTTGCTTTGGCATTCTACAGAGAAATGAGGCGTTGTCGAATTTCACCCAATGTTTATACTCTTAATATGGTTATGTGTGCTTATTGTAGAGTGGGAAAATTAGAGAATGCTGTTGAAGTCCTTGAGAAGATGGAGAGCATGGGTTTCAGTCCTACCATTGTGTCATATAATACACTTATTGCAGGACATTGCGATAAGGGTCTTCTGAGTGCCGCTGTGAAGTTCAAAAACTTGATGGTGAAGAATGGATTGCACCCGAATGTGGTAACTTTTAACACACTCATTGATGGGTTTTGTAAGCAAGGAAAACTACCAGAAGCAAATAGAATTTTTAGTGAGATGAAAGCCCTGAATGTGGCTCCTAATACAGTAACCTATAATACCATGATAAATGGGTATGGTCAAGCAGGTAATAGTGAGATGGGCAGTAGGCTTTTTGAGGAGATGTCAAAGGACCGAGTCAGCGCTGATATTCTGACTTATAATGGATTGATTTTGGGACTATGCAAGGAGGGTAAGACAAAGAAAGCTGCATATCTGGTAAAAGAGCTTGACAGAAAGAACTTTGTCCCAAATGCCTCAACCTTTTCTGCACTTGTTGGTGGGCAATGTGTGAGAAAGAACTCAGATCGTGCCTTTCTGTTGTACAAGAGCATGGTTAGGAGTAGCTATCATCCCGATGAACATACTTTTAAGATGTTGTTGTCTAGCTTCTGCAATAATAGGGATTTTGATGGAGCAGTTGAAGTCTTGAGAGAAATGTTTGAGAGAAATTTTGTTCCTGATTCAGGCATATTATCTGATCTATGTCTGGGACTTCAACGCTGTGGAAAAGAAAAATGGGTAGAATTGCTATGCACTGAGATGGAAGCTAGACGCCTCATTCCTCAAGGTTTTGACATGGCGAAGATTATCTGCTGTGTAGAAGAGAATGATAACTTAACAGATTAG

Protein Analysis

536

Amino Acids

60.82

Weight (kDa)

9.04

Isoelectric Point (pI)

31.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 181 - 281 4.3e-07 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 201 - 245 2.9e-06 PPR repeat family
PPR_3 PF13812 227 - 280 5.1e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 234 - 265 9.8e-09 PPR repeat
PPR_2 PF13041 236 - 274 1.8e-08 PPR repeat family
PPR PF01535 240 - 269 7.6e-06 PPR repeat
PPR_1 PF12854 267 - 300 7e-08 PPR repeat
PPR_2 PF13041 271 - 320 7e-18 PPR repeat family
PPR_3 PF13812 299 - 355 8.8e-14 Pentatricopeptide repeat domain
PPR_1 PF12854 302 - 335 2.1e-14 PPR repeat
PPR_2 PF13041 306 - 353 1e-19 PPR repeat family
PPR PF01535 309 - 338 2.1e-08 PPR repeat
PPR_1 PF12854 338 - 370 1.4e-08 PPR repeat
PPR_2 PF13041 341 - 390 1.8e-15 PPR repeat family
PPR PF01535 344 - 373 2.1e-08 PPR repeat
PPR_3 PF13812 364 - 421 3.6e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 374 - 403 6.3e-06 PPR repeat
PPR_2 PF13041 377 - 424 9.2e-10 PPR repeat family
PPR_2 PF13041 419 - 460 2e-06 PPR repeat family
PPR_1 PF12854 444 - 474 2.4e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1143
AasI GACNNNNNNGTC 1 cut(s) 610
Acc16I TGCGCA 1 cut(s) 537
Acc36I ACCTGC 1 cut(s) 1058
AciI CCGC 2 cut(s) 484, 873
AclWI GGATC 1 cut(s) 355
AcsI RAATTY 6 cut(s) 88, 270, 389, 699, 987, 1432
AcyI GRCGYC 1 cut(s) 1537
AfaI GTAC 2 cut(s) 482, 1307
AfeI AGCGCT 1 cut(s) 1126
AfiI CCNNNNNNNGG 4 cut(s) 504, 922, 1015, 1448
AflIII ACRYGT 1 cut(s) 567
AgsI TTSAA 9 cut(s) 30, 45, 307, 464, 526, 776, 886, 1406, 1481
AjnI CCWGG 1 cut(s) 430
AluBI AGCT 9 cut(s) 214, 457, 633, 656, 1190, 1210, 1329, 1371, 1532
AluI AGCT 9 cut(s) 214, 457, 633, 656, 1190, 1210, 1329, 1371, 1532
Alw21I GWGCWC 1 cut(s) 635
AlwI GGATC 1 cut(s) 355
AlwNI CAGNNNCTG 1 cut(s) 83
Ama87I CYCGRG 1 cut(s) 504
Aor51HI AGCGCT 1 cut(s) 1126
AoxI GGCC 1 cut(s) 151
ApeKI GCWGC 1 cut(s) 1190
ApoI RAATTY 6 cut(s) 88, 270, 389, 699, 987, 1432
ArsI GACNNNNNNTTYG 2 cut(s) 149, 181
AspLEI GCGC 2 cut(s) 538, 1127
AspS9I GGNCC 2 cut(s) 435, 1114
AsuHPI GGTGA 3 cut(s) 367, 696, 910
AvaI CYCGRG 1 cut(s) 504
AvaII GGWCC 2 cut(s) 435, 1114
BanII GRGCYC 1 cut(s) 635
BbsI GAAGAC 1 cut(s) 854
Bbv12I GWGCWC 1 cut(s) 635
BbvI GCAGC 1 cut(s) 1177
BccI CCATC 6 cut(s) 784, 889, 941, 1075, 1388, 1519
BciT130I CCWGG 1 cut(s) 432
BfaI CTAG 2 cut(s) 1368, 1533
BfmI CTRYAG 2 cut(s) 399, 676
BfoI RGCGCY 1 cut(s) 1128
BfuAI ACCTGC 1 cut(s) 1058
BisI GCNGC 2 cut(s) 873, 1191
BlpI GCTNAGC 1 cut(s) 210
BlsI GCNGC 2 cut(s) 874, 1192
Bme1390I CCNGG 1 cut(s) 432
Bme18I GGWCC 2 cut(s) 435, 1114
BmeT110I CYCGRG 1 cut(s) 504
BmgT120I GGNCC 2 cut(s) 435, 1114
BmiI GGNNCC 2 cut(s) 436, 1020
BmrFI CCNGG 1 cut(s) 432
BmrI ACTGGG 2 cut(s) 214, 319
BmuI ACTGGG 2 cut(s) 214, 319
BpiI GAAGAC 1 cut(s) 854
Bpu10I CCTNAGC 1 cut(s) 223
Bpu1102I GCTNAGC 1 cut(s) 210
BpuEI CTTGAG 4 cut(s) 317, 803, 1432, 1533
BsaHI GRCGYC 1 cut(s) 1537
BsaJI CCNNGG 2 cut(s) 431, 503
Bsc4I CCNNNNNNNGG 4 cut(s) 504, 922, 1015, 1448
Bse1I ACTGG 2 cut(s) 209, 314
Bse3DI GCAATG 4 cut(s) 625, 635, 847, 1274
BseBI CCWGG 1 cut(s) 432
BseDI CCNNGG 2 cut(s) 431, 503
BseGI GGATG 1 cut(s) 1333
BseLI CCNNNNNNNGG 4 cut(s) 504, 922, 1015, 1448
BseMI GCAATG 4 cut(s) 625, 635, 847, 1274
BseMII CTCAG 4 cut(s) 90, 857, 1299, 1512
BseNI ACTGG 2 cut(s) 209, 314
BseRI GAGGAG 2 cut(s) 492, 1115
BseXI GCAGC 1 cut(s) 1177
BsgI GTGCAG 1 cut(s) 1236
BshFI GGCC 1 cut(s) 153
BsiHKAI GWGCWC 1 cut(s) 635
BsiHKCI CYCGRG 1 cut(s) 504
BslFI GGGAC 3 cut(s) 1173, 1214, 1488
BslI CCNNNNNNNGG 4 cut(s) 504, 922, 1015, 1448
BsmFI GGGAC 3 cut(s) 1173, 1214, 1488
BsmI GAATGC 3 cut(s) 562, 671, 772
BsnI GGCC 1 cut(s) 153
BsoBI CYCGRG 1 cut(s) 504
Bsp1286I GDGCHC 1 cut(s) 635
Bsp1407I TGTACA 1 cut(s) 1305
Bsp143I GATC 3 cut(s) 360, 1288, 1462
Bsp1720I GCTNAGC 1 cut(s) 210
BspACI CCGC 2 cut(s) 484, 873
BspANI GGCC 1 cut(s) 153
BspCNI CTCAG 4 cut(s) 89, 858, 1298, 1513
BspLI GGNNCC 2 cut(s) 436, 1020
BspMAI CTGCAG 1 cut(s) 403
BspMI ACCTGC 1 cut(s) 1058
BspPI GGATC 1 cut(s) 355
BsrDI GCAATG 4 cut(s) 625, 635, 847, 1274
BsrGI TGTACA 1 cut(s) 1305
BsrI ACTGG 2 cut(s) 209, 314
BssECI CCNNGG 2 cut(s) 431, 503
BssMI GATC 3 cut(s) 360, 1288, 1462
BssNI GRCGYC 1 cut(s) 1537
Bst2UI CCWGG 1 cut(s) 432
Bst4CI ACNGT 3 cut(s) 474, 607, 1030
Bst6I CTCTTC 1 cut(s) 1581
BstACI GRCGYC 1 cut(s) 1537
BstAUI TGTACA 1 cut(s) 1305
BstDEI CTNAG 6 cut(s) 76, 210, 223, 866, 1285, 1521
BstENI CCTNNNNNAGG 1 cut(s) 1446
BstF5I GGATG 1 cut(s) 1333
BstH2I RGCGCY 1 cut(s) 1128
BstHHI GCGC 2 cut(s) 538, 1127
BstKTI GATC 3 cut(s) 363, 1291, 1465
BstMBI GATC 3 cut(s) 360, 1288, 1462
BstMWI GCNNNNNNNGC 2 cut(s) 454, 662
BstNI CCWGG 1 cut(s) 432
BstSCI CCNGG 1 cut(s) 430
BstSFI CTRYAG 2 cut(s) 399, 676
BstV1I GCAGC 1 cut(s) 1177
BstV2I GAAGAC 1 cut(s) 854
BsuRI GGCC 1 cut(s) 153
BtsCI GGATG 1 cut(s) 1333
BtsIMutI CAGTG 1 cut(s) 1518
BveI ACCTGC 1 cut(s) 1058
CaiI CAGNNNCTG 1 cut(s) 83
CfoI GCGC 2 cut(s) 538, 1127
Cfr13I GGNCC 2 cut(s) 435, 1114
CseI GACGC 1 cut(s) 1545
Csp6I GTAC 2 cut(s) 481, 1306
CviAII CATG 6 cut(s) 358, 615, 799, 1045, 1315, 1561
CviQI GTAC 2 cut(s) 481, 1306
DdeI CTNAG 6 cut(s) 76, 210, 223, 866, 1285, 1521
DpnI GATC 3 cut(s) 362, 1290, 1464
DpnII GATC 3 cut(s) 360, 1288, 1462
DrdI GACNNNNNNGTC 1 cut(s) 610
DseDI GACNNNNNNGTC 1 cut(s) 610
Eam1104I CTCTTC 1 cut(s) 1581
EarI CTCTTC 1 cut(s) 1581
Ecl136II GAGCTC 1 cut(s) 633
Eco24I GRGCYC 1 cut(s) 635
Eco47I GGWCC 2 cut(s) 435, 1114
Eco47III AGCGCT 1 cut(s) 1126
Eco53kI GAGCTC 1 cut(s) 633
Eco88I CYCGRG 1 cut(s) 504
EcoICRI GAGCTC 1 cut(s) 633
EcoNI CCTNNNNNAGG 1 cut(s) 1446
EcoRII CCWGG 1 cut(s) 430
EcoT38I GRGCYC 1 cut(s) 635
FaeI CATG 6 cut(s) 361, 618, 802, 1048, 1318, 1564
FaqI GGGAC 3 cut(s) 1173, 1214, 1488
FatI CATG 6 cut(s) 357, 614, 798, 1044, 1314, 1560
FauNDI CATATG 1 cut(s) 540
Fnu4HI GCNGC 2 cut(s) 873, 1191
FokI GGATG 1 cut(s) 1320
FriOI GRGCYC 1 cut(s) 635
Fsp4HI GCNGC 2 cut(s) 873, 1191
FspBI CTAG 2 cut(s) 1368, 1533
FspI TGCGCA 1 cut(s) 537
GlaI GCGC 2 cut(s) 537, 1126
GluI GCNGC 2 cut(s) 873, 1191
HaeII RGCGCY 1 cut(s) 1128
HaeIII GGCC 1 cut(s) 153
HgaI GACGC 1 cut(s) 1545
HhaI GCGC 2 cut(s) 538, 1127
Hin1I GRCGYC 1 cut(s) 1537
Hin1II CATG 6 cut(s) 361, 618, 802, 1048, 1318, 1564
Hin6I GCGC 2 cut(s) 536, 1125
HinP1I GCGC 2 cut(s) 536, 1125
HindIII AAGCTT 1 cut(s) 212
HinfI GANTC 9 cut(s) 109, 193, 404, 421, 494, 515, 611, 1119, 1445
HphI GGTGA 3 cut(s) 367, 696, 910
Hpy166II GTNNAC 2 cut(s) 181, 647
Hpy188I TCNGA 8 cut(s) 202, 237, 248, 276, 867, 1137, 1288, 1462
Hpy188III TCNNGA 6 cut(s) 140, 296, 526, 1337, 1411, 1442
Hpy8I GTNNAC 2 cut(s) 181, 647
Hpy99I CGWCG 1 cut(s) 607
HpyAV CCTTC 2 cut(s) 271, 577
HpyCH4III ACNGT 3 cut(s) 474, 607, 1030
HpyCH4IV ACGT 2 cut(s) 530, 569
HpyCH4V TGCA 9 cut(s) 401, 618, 842, 913, 1167, 1193, 1253, 1377, 1518
HpyF10VI GCNNNNNNNGC 2 cut(s) 454, 662
HpyF3I CTNAG 6 cut(s) 76, 210, 223, 866, 1285, 1521
HpySE526I ACGT 2 cut(s) 530, 569
Hsp92I GRCGYC 1 cut(s) 1537
Hsp92II CATG 6 cut(s) 361, 618, 802, 1048, 1318, 1564
HspAI GCGC 2 cut(s) 536, 1125
Kzo9I GATC 3 cut(s) 360, 1288, 1462
LmnI GCTCC 2 cut(s) 1024, 1397
Lsp1109I GCAGC 1 cut(s) 1177
MaeI CTAG 2 cut(s) 1368, 1533
MaeII ACGT 2 cut(s) 530, 569
MaeIII GTNAC 2 cut(s) 925, 1030
MalI GATC 3 cut(s) 362, 1290, 1464
MboI GATC 3 cut(s) 360, 1288, 1462
MboII GAAGA 6 cut(s) 556, 799, 854, 913, 1579, 1598
MfeI CAATTG 1 cut(s) 45
MhlI GDGCHC 1 cut(s) 635
MlyI GAGTC 3 cut(s) 413, 620, 1128
MmeI TCCRAC 1 cut(s) 295
MseI TTAA 6 cut(s) 171, 393, 723, 933, 1353, 1601
MslI CAYNNNNRTG 3 cut(s) 918, 1338, 1523
MspA1I CMGCKG 1 cut(s) 875
MspR9I CCNGG 1 cut(s) 432
MunI CAATTG 1 cut(s) 45
Mva1269I GAATGC 3 cut(s) 562, 671, 772
MvaI CCWGG 1 cut(s) 432
MwoI GCNNNNNNNGC 2 cut(s) 454, 662
NdeI CATATG 1 cut(s) 540
NdeII GATC 3 cut(s) 360, 1288, 1462
NlaIII CATG 6 cut(s) 361, 618, 802, 1048, 1318, 1564
NlaIV GGNNCC 2 cut(s) 436, 1020
NsbI TGCGCA 1 cut(s) 537
PctI GAATGC 3 cut(s) 562, 671, 772
PfeI GAWTC 6 cut(s) 109, 193, 421, 494, 515, 1445
PflFI GACNNNGTC 1 cut(s) 1118
PkrI GCNGC 2 cut(s) 874, 1192
PleI GAGTC 3 cut(s) 412, 619, 1127
PpsI GAGTC 3 cut(s) 412, 619, 1127
PsiI TTATAA 1 cut(s) 1143
Psp124BI GAGCTC 1 cut(s) 635
Psp6I CCWGG 1 cut(s) 430
PspGI CCWGG 1 cut(s) 430
PspN4I GGNNCC 2 cut(s) 436, 1020
PspPI GGNCC 2 cut(s) 435, 1114
PstI CTGCAG 1 cut(s) 403
PstNI CAGNNNCTG 1 cut(s) 83
PsyI GACNNNGTC 1 cut(s) 1118
RsaI GTAC 2 cut(s) 482, 1307
RsaNI GTAC 2 cut(s) 481, 1306
RseI CAYNNNNRTG 3 cut(s) 918, 1338, 1523
SacI GAGCTC 1 cut(s) 635
SaqAI TTAA 6 cut(s) 171, 393, 723, 933, 1353, 1601
SatI GCNGC 2 cut(s) 873, 1191
Sau3AI GATC 3 cut(s) 360, 1288, 1462
Sau96I GGNCC 2 cut(s) 435, 1114
SchI GAGTC 3 cut(s) 413, 620, 1128
ScrFI CCNGG 1 cut(s) 432
SduI GDGCHC 1 cut(s) 635
SfcI CTRYAG 2 cut(s) 399, 676
SinI GGWCC 2 cut(s) 435, 1114
SmiMI CAYNNNNRTG 3 cut(s) 918, 1338, 1523
SmlI CTYRAG 4 cut(s) 296, 782, 1411, 1548
SmoI CTYRAG 4 cut(s) 296, 782, 1411, 1548
SsiI CCGC 2 cut(s) 484, 873
SspMI CTAG 2 cut(s) 1368, 1533
SstI GAGCTC 1 cut(s) 635
StyD4I CCNGG 1 cut(s) 430
TaaI ACNGT 3 cut(s) 474, 607, 1030
TaiI ACGT 2 cut(s) 533, 572
TaqI TCGA 4 cut(s) 345, 385, 407, 697
TaqII GACCGA 1 cut(s) 1131
TatI WGTACW 1 cut(s) 1305
TauI GCSGC 1 cut(s) 875
TfiI GAWTC 6 cut(s) 109, 193, 421, 494, 515, 1445
Tru1I TTAA 6 cut(s) 171, 393, 723, 933, 1353, 1601
Tru9I TTAA 6 cut(s) 171, 393, 723, 933, 1353, 1601
TscAI CASTG 1 cut(s) 1525
TseI GCWGC 1 cut(s) 1190
TspDTI ATGAA 5 cut(s) 17, 557, 596, 1016, 1356
TspRI CASTG 1 cut(s) 1525
Tth111I GACNNNGTC 1 cut(s) 1118
VpaK11BI GGWCC 2 cut(s) 435, 1114
XagI CCTNNNNNAGG 1 cut(s) 1446
XapI RAATTY 6 cut(s) 88, 270, 389, 699, 987, 1432
XspI CTAG 2 cut(s) 1368, 1533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.