Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0008589

Physical Location & Seq

Genomic Coordinates Reverse (-)

745922 .. 746473

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG003600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAATAAACTCCCATTTCGTCAAGTTTCAATCTTGCCCAATTCAATTGCTAAAGAACCCACCTTTACAAAACCCTCAGTTTCTGTGAATTTGGAAACAAGGAATTGGAATCCAATTCCTATTCCCCACAGAACAATTCCTGAACCCAAAGGCCAAGACCTTGATTTTGTTAATGTTGTAAACAGCCATTTGATTCACTCTGATTGGGCTAAGCTTAATTCCTTAGCCAATGGTCTGACTGCTTTCAGAGTGAAACATATTTTGCTGAAAATTCAGAAGGATTATGTTCTTTCTCTTGAGTTTTTCAACTGGGTTGGAACTCACAAACCCACTTCACATACCCTCGAAACACATTCCATGATCCTCCACATTCTCACCAAGTATCGAAAATTTAAGTCTGCAGAGTCGATTTTGAGAAAGATTCTTGTGCCAGGGTCCATAGACTTGCCCCCCAAGCTGTTTGAAGCGATACTGTATTCGTCCCGCTTGTGTGATTCCTCTCCTCGGGTTTTTGATTCGCTTTTCAAGACGTTTGCGCATAGCCGCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090615 GO:0090617 GO:0097159 GO:0140053 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

183

Amino Acids

20.98

Weight (kDa)

9.91

Isoelectric Point (pI)

39.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26680 AT4G26680
fragaria_vesca	FvH4_6g40750
malus_domestica	MD17G1115600.v1.1
prunus_persica	Prupe.3G199000_v2.0.a1 Prupe.3G199000_v2.0.a1
pyrus_communis	pycom17g10680
rosa_chinensis	RchiOBHm_Chr2g0156201 RchiOBHm_Chr4g0385191
rosa_laevigata	RLG00000010250 RLG00000020895
rosa_multiflora	Rmu_sc0000260.1_g000011 Rmu_sc0003086.1_g000003
rosa_roxburghii	Rroxscaffold_2G00093150 Rroxscaffold_5G00333090
rosa_rugosa	Rorug02G0452500
rosa_samantha	Rh2AG519000 Rh2BG530400 Rh2CG504000 Rh2DG539400 Rh4CG003600
rosa_wichuraiana	Rw2G042750 Rw4G000590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	537
AciI	CCGC	2 cut(s)	484, 544
AclWI	GGATC	1 cut(s)	355
AcsI	RAATTY	3 cut(s)	88, 270, 389
AfiI	CCNNNNNNNGG	1 cut(s)	504
AgsI	TTSAA	5 cut(s)	30, 45, 307, 464, 526
AjnI	CCWGG	1 cut(s)	430
AluBI	AGCT	2 cut(s)	214, 457
AluI	AGCT	2 cut(s)	214, 457
AlwI	GGATC	1 cut(s)	355
AlwNI	CAGNNNCTG	1 cut(s)	83
Ama87I	CYCGRG	1 cut(s)	504
AoxI	GGCC	1 cut(s)	151
ApoI	RAATTY	3 cut(s)	88, 270, 389
ArsI	GACNNNNNNTTYG	2 cut(s)	149, 181
AspLEI	GCGC	1 cut(s)	538
AspS9I	GGNCC	1 cut(s)	435
AsuHPI	GGTGA	1 cut(s)	367
AvaI	CYCGRG	1 cut(s)	504
AvaII	GGWCC	1 cut(s)	435
BciT130I	CCWGG	1 cut(s)	432
BfmI	CTRYAG	1 cut(s)	399
BisI	GCNGC	1 cut(s)	544
BlpI	GCTNAGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	545
Bme1390I	CCNGG	1 cut(s)	432
Bme18I	GGWCC	1 cut(s)	435
BmeT110I	CYCGRG	1 cut(s)	504
BmgT120I	GGNCC	1 cut(s)	435
BmiI	GGNNCC	1 cut(s)	436
BmrFI	CCNGG	1 cut(s)	432
BmrI	ACTGGG	1 cut(s)	319
BmuI	ACTGGG	1 cut(s)	319
Bpu10I	CCTNAGC	1 cut(s)	223
Bpu1102I	GCTNAGC	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	317
BsaJI	CCNNGG	2 cut(s)	431, 503
Bsc4I	CCNNNNNNNGG	1 cut(s)	504
Bse1I	ACTGG	1 cut(s)	314
BseBI	CCWGG	1 cut(s)	432
BseDI	CCNNGG	2 cut(s)	431, 503
BseLI	CCNNNNNNNGG	1 cut(s)	504
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	314
BseRI	GAGGAG	1 cut(s)	492
BshFI	GGCC	1 cut(s)	153
BsiHKCI	CYCGRG	1 cut(s)	504
BslFI	GGGAC	1 cut(s)	466
BslI	CCNNNNNNNGG	1 cut(s)	504
BsmFI	GGGAC	1 cut(s)	466
BsnI	GGCC	1 cut(s)	153
BsoBI	CYCGRG	1 cut(s)	504
Bsp143I	GATC	1 cut(s)	360
Bsp1720I	GCTNAGC	1 cut(s)	210
BspACI	CCGC	2 cut(s)	484, 544
BspANI	GGCC	1 cut(s)	153
BspCNI	CTCAG	1 cut(s)	89
BspLI	GGNNCC	1 cut(s)	436
BspMAI	CTGCAG	1 cut(s)	403
BspPI	GGATC	1 cut(s)	355
BsrI	ACTGG	1 cut(s)	314
BssECI	CCNNGG	2 cut(s)	431, 503
BssMI	GATC	1 cut(s)	360
Bst2UI	CCWGG	1 cut(s)	432
Bst4CI	ACNGT	1 cut(s)	474
BstDEI	CTNAG	3 cut(s)	76, 210, 223
BstHHI	GCGC	1 cut(s)	538
BstKTI	GATC	1 cut(s)	363
BstMBI	GATC	1 cut(s)	360
BstMWI	GCNNNNNNNGC	1 cut(s)	454
BstNI	CCWGG	1 cut(s)	432
BstSCI	CCNGG	1 cut(s)	430
BstSFI	CTRYAG	1 cut(s)	399
BsuRI	GGCC	1 cut(s)	153
CaiI	CAGNNNCTG	1 cut(s)	83
CfoI	GCGC	1 cut(s)	538
Cfr13I	GGNCC	1 cut(s)	435
CviAII	CATG	1 cut(s)	358
CviJI	RGCY	7 cut(s)	153, 186, 209, 214, 227, 457, 543
CviKI_1	RGCY	7 cut(s)	153, 186, 209, 214, 227, 457, 543
DdeI	CTNAG	3 cut(s)	76, 210, 223
DpnI	GATC	1 cut(s)	362
DpnII	GATC	1 cut(s)	360
Eco47I	GGWCC	1 cut(s)	435
Eco88I	CYCGRG	1 cut(s)	504
EcoRII	CCWGG	1 cut(s)	430
FaeI	CATG	1 cut(s)	361
FaiI	YATR	8 cut(s)	258, 285, 339, 359, 440, 540, 548, 550
FaqI	GGGAC	1 cut(s)	466
FatI	CATG	1 cut(s)	357
FauI	CCCGC	1 cut(s)	491
FauNDI	CATATG	1 cut(s)	548
Fnu4HI	GCNGC	1 cut(s)	544
Fsp4HI	GCNGC	1 cut(s)	544
FspI	TGCGCA	1 cut(s)	537
GlaI	GCGC	1 cut(s)	537
GluI	GCNGC	1 cut(s)	544
HaeIII	GGCC	1 cut(s)	153
HhaI	GCGC	1 cut(s)	538
Hin1II	CATG	1 cut(s)	361
Hin6I	GCGC	1 cut(s)	536
HinP1I	GCGC	1 cut(s)	536
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	6 cut(s)	109, 193, 404, 421, 494, 515
HphI	GGTGA	1 cut(s)	367
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	4 cut(s)	202, 237, 248, 276
Hpy188III	TCNNGA	3 cut(s)	140, 296, 526
Hpy8I	GTNNAC	1 cut(s)	181
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	1 cut(s)	474
HpyCH4IV	ACGT	1 cut(s)	530
HpyCH4V	TGCA	1 cut(s)	401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	454
HpyF3I	CTNAG	3 cut(s)	76, 210, 223
HpySE526I	ACGT	1 cut(s)	530
Hsp92II	CATG	1 cut(s)	361
HspAI	GCGC	1 cut(s)	536
Kzo9I	GATC	1 cut(s)	360
LpnPI	CCDG	4 cut(s)	153, 295, 417, 444
MaeII	ACGT	1 cut(s)	530
MalI	GATC	1 cut(s)	362
MboI	GATC	1 cut(s)	360
MfeI	CAATTG	1 cut(s)	45
MluCI	AATT	9 cut(s)	40, 45, 88, 103, 114, 135, 217, 270, 389
MlyI	GAGTC	1 cut(s)	413
MmeI	TCCRAC	1 cut(s)	295
MnlI	CCTC	5 cut(s)	85, 353, 374, 508, 513
MseI	TTAA	3 cut(s)	171, 216, 393
MspR9I	CCNGG	1 cut(s)	432
MunI	CAATTG	1 cut(s)	45
MvaI	CCWGG	1 cut(s)	432
MwoI	GCNNNNNNNGC	1 cut(s)	454
NdeI	CATATG	1 cut(s)	548
NdeII	GATC	1 cut(s)	360
NlaIII	CATG	1 cut(s)	361
NlaIV	GGNNCC	1 cut(s)	436
NsbI	TGCGCA	1 cut(s)	537
PfeI	GAWTC	5 cut(s)	109, 193, 421, 494, 515
PkrI	GCNGC	1 cut(s)	545
PleI	GAGTC	1 cut(s)	412
PpsI	GAGTC	1 cut(s)	412
Psp6I	CCWGG	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	430
PspN4I	GGNNCC	1 cut(s)	436
PspPI	GGNCC	1 cut(s)	435
PstI	CTGCAG	1 cut(s)	403
PstNI	CAGNNNCTG	1 cut(s)	83
SaqAI	TTAA	3 cut(s)	171, 216, 393
SatI	GCNGC	1 cut(s)	544
Sau3AI	GATC	1 cut(s)	360
Sau96I	GGNCC	1 cut(s)	435
SchI	GAGTC	1 cut(s)	413
ScrFI	CCNGG	1 cut(s)	432
SetI	ASST	5 cut(s)	65, 162, 216, 459, 533
SfcI	CTRYAG	1 cut(s)	399
SinI	GGWCC	1 cut(s)	435
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
Sse9I	AATT	9 cut(s)	40, 45, 88, 103, 114, 135, 217, 270, 389
SsiI	CCGC	2 cut(s)	484, 544
StyD4I	CCNGG	1 cut(s)	430
TaaI	ACNGT	1 cut(s)	474
TaiI	ACGT	1 cut(s)	533
TaqI	TCGA	3 cut(s)	345, 385, 407
TasI	AATT	9 cut(s)	40, 45, 88, 103, 114, 135, 217, 270, 389
TauI	GCSGC	1 cut(s)	546
TfiI	GAWTC	5 cut(s)	109, 193, 421, 494, 515
Tru1I	TTAA	3 cut(s)	171, 216, 393
Tru9I	TTAA	3 cut(s)	171, 216, 393
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	435
XapI	RAATTY	3 cut(s)	88, 270, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.