Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010316

Physical Location & Seq

Genomic Coordinates Forward (+)

13823510 .. 13826395

Gene Structure 2886 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G27690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGAATTATCTTCTTGGAGCCTTCAAGCCCGCCTGCAACATCTCCATCACTTTTTCTGATGGCAAAAATCGTAAACAGGTTCCCATGAAGAAAGAAAATGGTCAGACGGCTCTGGTGCCTCTGTTCCATAGTCAAGACACTATTTCCGGGAAGGTTTGCATTGAACCATATCAAGGGAAAAAGGTGGAGCATAATGGTGTAAAAGTTGAGCTTCTTGGTCAAATAGAAATGTACTTTGACAGAGGAAACTTCTATGATTTCACTTCCTTGGTTCGTGAACTGGATGTACCTGGAGAAATATACGAAAGGAAGACATACCCTTTTGAATTTCCTACTGTGGAGATGCCATACGAGACATACAATGGTGTGAATGTGCGGCTAAGATATGTCCTCAAAGTAACCGTCACTCGTGGCTACGCTGGAAGCATCTTGGAATACCAGGAGCTTGTGGTACGGAACTACGCTCCACTTCCTGATATTAATAACAGCATCAAGATGGAAGTTGGAATTGAGGATTGCCTGCACATCGAGTTTGAGTACAATAAAAGCAAGTATCACCTAAAAGATGTCATCCTTGGGAAAATATATTTTCTTCTTGTGAGAATCAAGATGAAGAATATGGATCTTGAGATCAGACGGCGGGAATCAACAGGTGCAGGTGCTAATACTCATGTCGAGACAGAAACTCTTGCAAAATTTGAGTTGATGGATGGAACTCCAGTTAGAGGTGAATCGATACCTGTAAGACTGTTTCTGGCCCCATATGATCTTACACCAACGCATCGCAACATCAACAACAAATTCAGCGTCAAGTATTATCTGAATCTTGTACTGGTAGATGAAGAGGATCGCCGATACTTCAAGCAGCAAGAAATCACGTTGTATAGGTTGAAGGAAGACGCATCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016197 GO:0016482 GO:0030904 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042147 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Vps26

Protein Analysis

303

Amino Acids

35.2

Weight (kDa)

7.02

Isoelectric Point (pI)

46.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vps26	PF03643	8 - 283	5e-131	Vacuolar protein sorting-associated protein 26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27690 AT4G27690 AT5G53530
fragaria_vesca	FvH4_7g32410
malus_domestica	MD01G1225600.v1.1 MD07G1296100.v1.1
prunus_persica	Prupe.2G315700_v2.0.a1
pyrus_communis	pycom01g23400
rosa_chinensis	RchiOBHm_Chr1g0381991
rosa_laevigata	RLG00000026195
rosa_multiflora	Rmu_co8508943.1_g000001 Rmu_sc0000110.1_g000002 Rmu_sc0009991.1_g000002
rosa_roxburghii	Rroxscaffold_4G00278280
rosa_rugosa	Rorug01G0432700
rosa_samantha	Rh1AG456000 Rh1BG413100 Rh1CG428000 Rh1DG445400
rosa_wichuraiana	Rw1G041320 Rw1G041530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	647
Acc36I	ACCTGC	1 cut(s)	647
AccB1I	GGYRCC	1 cut(s)	115
AciI	CCGC	3 cut(s)	30, 376, 640
AclWI	GGATC	2 cut(s)	630, 855
AcsI	RAATTY	3 cut(s)	326, 695, 800
AfaI	GTAC	5 cut(s)	233, 288, 453, 539, 831
AfiI	CCNNNNNNNGG	2 cut(s)	173, 725
AgsI	TTSAA	5 cut(s)	25, 164, 326, 862, 892
AjnI	CCWGG	2 cut(s)	289, 438
AluBI	AGCT	2 cut(s)	211, 445
AluI	AGCT	2 cut(s)	211, 445
Alw26I	GTCTC	2 cut(s)	347, 671
AlwI	GGATC	2 cut(s)	630, 855
AoxI	GGCC	1 cut(s)	756
ApeKI	GCWGC	1 cut(s)	865
ApoI	RAATTY	3 cut(s)	326, 695, 800
ArsI	GACNNNNNNTTYG	4 cut(s)	387, 419, 792, 824
AseI	ATTAAT	1 cut(s)	480
AspS9I	GGNCC	1 cut(s)	757
AsuC2I	CCSGG	1 cut(s)	148
AsuHPI	GGTGA	2 cut(s)	548, 740
BanI	GGYRCC	1 cut(s)	115
BauI	CACGAG	1 cut(s)	408
BbsI	GAAGAC	2 cut(s)	317, 903
BbvI	GCAGC	1 cut(s)	877
BccI	CCATC	5 cut(s)	53, 53, 490, 700, 704
BceAI	ACGGC	2 cut(s)	123, 653
BciT130I	CCWGG	2 cut(s)	291, 440
BcnI	CCSGG	1 cut(s)	148
BcoDI	GTCTC	2 cut(s)	347, 671
BfuAI	ACCTGC	1 cut(s)	647
BisI	GCNGC	2 cut(s)	377, 866
BlsI	GCNGC	2 cut(s)	378, 867
Bme1390I	CCNGG	3 cut(s)	148, 291, 440
BmgT120I	GGNCC	1 cut(s)	757
BmiI	GGNNCC	4 cut(s)	19, 81, 117, 759
BmrFI	CCNGG	3 cut(s)	148, 291, 440
BmsI	GCATC	4 cut(s)	333, 435, 498, 790
BpiI	GAAGAC	2 cut(s)	317, 903
BpmI	CTGGAG	2 cut(s)	312, 702
BpuEI	CTTGAG	1 cut(s)	647
BpuMI	CCSGG	1 cut(s)	148
Bsa29I	ATCGAT	1 cut(s)	734
BsaJI	CCNNGG	2 cut(s)	267, 574
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 725
Bse1I	ACTGG	3 cut(s)	285, 719, 837
BseBI	CCWGG	2 cut(s)	291, 440
BseCI	ATCGAT	1 cut(s)	734
BseDI	CCNNGG	2 cut(s)	267, 574
BseGI	GGATG	3 cut(s)	289, 570, 715
BseLI	CCNNNNNNNGG	2 cut(s)	173, 725
BseNI	ACTGG	3 cut(s)	285, 719, 837
BseXI	GCAGC	1 cut(s)	877
BsgI	GTGCAG	2 cut(s)	506, 675
BshFI	GGCC	1 cut(s)	758
BshNI	GGYRCC	1 cut(s)	115
BshVI	ATCGAT	1 cut(s)	734
BsiSI	CCGG	1 cut(s)	147
BslI	CCNNNNNNNGG	2 cut(s)	173, 725
BsmAI	GTCTC	2 cut(s)	347, 671
BsnI	GGCC	1 cut(s)	758
Bsp143I	GATC	4 cut(s)	622, 630, 766, 847
BspACI	CCGC	3 cut(s)	30, 376, 640
BspANI	GGCC	1 cut(s)	758
BspDI	ATCGAT	1 cut(s)	734
BspLI	GGNNCC	4 cut(s)	19, 81, 117, 759
BspMI	ACCTGC	1 cut(s)	647
BspPI	GGATC	2 cut(s)	630, 855
BspT107I	GGYRCC	1 cut(s)	115
BsrI	ACTGG	3 cut(s)	285, 719, 837
BssECI	CCNNGG	2 cut(s)	267, 574
BssMI	GATC	4 cut(s)	622, 630, 766, 847
BssSI	CACGAG	1 cut(s)	408
BssT1I	CCWWGG	2 cut(s)	267, 574
Bst2BI	CACGAG	1 cut(s)	408
Bst2UI	CCWGG	2 cut(s)	291, 440
Bst4CI	ACNGT	3 cut(s)	337, 403, 750
Bst6I	CTCTTC	1 cut(s)	837
BstC8I	GCNNGC	3 cut(s)	30, 34, 521
BstDEI	CTNAG	1 cut(s)	380
BstF5I	GGATG	3 cut(s)	289, 570, 715
BstKTI	GATC	4 cut(s)	625, 633, 769, 850
BstMAI	GTCTC	2 cut(s)	347, 671
BstMBI	GATC	4 cut(s)	622, 630, 766, 847
BstNI	CCWGG	2 cut(s)	291, 440
BstSCI	CCNGG	3 cut(s)	146, 289, 438
BstV1I	GCAGC	1 cut(s)	877
BstV2I	GAAGAC	2 cut(s)	317, 903
BstX2I	RGATCY	1 cut(s)	622
BstYI	RGATCY	1 cut(s)	622
Bsu15I	ATCGAT	1 cut(s)	734
BsuRI	GGCC	1 cut(s)	758
BsuTUI	ATCGAT	1 cut(s)	734
BtgZI	GCGATG	1 cut(s)	767
BtsCI	GGATG	3 cut(s)	289, 570, 715
BveI	ACCTGC	1 cut(s)	647
Cac8I	GCNNGC	3 cut(s)	30, 34, 521
Cfr13I	GGNCC	1 cut(s)	757
ClaI	ATCGAT	1 cut(s)	734
CseI	GACGC	1 cut(s)	796
Csp6I	GTAC	5 cut(s)	232, 287, 452, 538, 830
CviAII	CATG	2 cut(s)	85, 671
CviJI	RGCY	8 cut(s)	20, 28, 110, 211, 379, 414, 445, 758
CviKI_1	RGCY	8 cut(s)	20, 28, 110, 211, 379, 414, 445, 758
CviQI	GTAC	5 cut(s)	232, 287, 452, 538, 830
DdeI	CTNAG	1 cut(s)	380
DpnI	GATC	4 cut(s)	624, 632, 768, 849
DpnII	GATC	4 cut(s)	622, 630, 766, 847
Eam1104I	CTCTTC	1 cut(s)	837
EarI	CTCTTC	1 cut(s)	837
Eco130I	CCWWGG	2 cut(s)	267, 574
EcoRII	CCWGG	2 cut(s)	289, 438
EcoT14I	CCWWGG	2 cut(s)	267, 574
ErhI	CCWWGG	2 cut(s)	267, 574
FaeI	CATG	2 cut(s)	88, 674
FalI	AAGNNNNNCTT	2 cut(s)	195, 227
FatI	CATG	2 cut(s)	84, 670
FauI	CCCGC	2 cut(s)	37, 633
FauNDI	CATATG	1 cut(s)	763
Fnu4HI	GCNGC	2 cut(s)	377, 866
FokI	GGATG	3 cut(s)	296, 557, 722
Fsp4HI	GCNGC	2 cut(s)	377, 866
GluI	GCNGC	2 cut(s)	377, 866
GsuI	CTGGAG	2 cut(s)	312, 702
HaeIII	GGCC	1 cut(s)	758
HapII	CCGG	1 cut(s)	147
HgaI	GACGC	1 cut(s)	796
Hin1II	CATG	2 cut(s)	88, 674
HinfI	GANTC	4 cut(s)	603, 644, 731, 823
HpaII	CCGG	1 cut(s)	147
HphI	GGTGA	2 cut(s)	548, 740
Hpy166II	GTNNAC	2 cut(s)	74, 278
Hpy188I	TCNGA	4 cut(s)	58, 105, 635, 822
Hpy188III	TCNNGA	8 cut(s)	134, 275, 473, 493, 607, 626, 676, 909
Hpy8I	GTNNAC	2 cut(s)	74, 278
HpyAV	CCTTC	3 cut(s)	31, 145, 886
HpyCH4III	ACNGT	3 cut(s)	337, 403, 750
HpyCH4IV	ACGT	1 cut(s)	878
HpyCH4V	TGCA	5 cut(s)	36, 159, 523, 656, 692
HpyF3I	CTNAG	1 cut(s)	380
HpySE526I	ACGT	1 cut(s)	878
Hsp92II	CATG	2 cut(s)	88, 674
Kzo9I	GATC	4 cut(s)	622, 630, 766, 847
LmnI	GCTCC	4 cut(s)	17, 187, 442, 469
Lsp1109I	GCAGC	1 cut(s)	877
LweI	GCATC	4 cut(s)	333, 435, 498, 790
MaeII	ACGT	1 cut(s)	878
MaeIII	GTNAC	2 cut(s)	397, 403
MalI	GATC	4 cut(s)	624, 632, 768, 849
MboI	GATC	4 cut(s)	622, 630, 766, 847
MboII	GAAGA	6 cut(s)	100, 322, 584, 625, 854, 908
MflI	RGATCY	1 cut(s)	622
MluCI	AATT	5 cut(s)	4, 326, 507, 695, 800
MmeI	TCCRAC	1 cut(s)	484
MnlI	CCTC	6 cut(s)	129, 236, 401, 505, 719, 838
MseI	TTAA	1 cut(s)	480
MslI	CAYNNNNRTG	2 cut(s)	195, 494
MspI	CCGG	1 cut(s)	147
MspR9I	CCNGG	3 cut(s)	148, 291, 440
MvaI	CCWGG	2 cut(s)	291, 440
NciI	CCSGG	1 cut(s)	148
NdeI	CATATG	1 cut(s)	763
NdeII	GATC	4 cut(s)	622, 630, 766, 847
NlaIII	CATG	2 cut(s)	88, 674
NlaIV	GGNNCC	4 cut(s)	19, 81, 117, 759
NmuCI	GTSAC	1 cut(s)	403
PaqCI	CACCTGC	1 cut(s)	647
PfeI	GAWTC	4 cut(s)	603, 644, 731, 823
PfoI	TCCNGGA	1 cut(s)	146
PkrI	GCNGC	2 cut(s)	378, 867
PshBI	ATTAAT	1 cut(s)	480
Psp6I	CCWGG	2 cut(s)	289, 438
PspGI	CCWGG	2 cut(s)	289, 438
PspN4I	GGNNCC	4 cut(s)	19, 81, 117, 759
PspPI	GGNCC	1 cut(s)	757
PsrI	GAACNNNNNNTAC	2 cut(s)	270, 302
PsuI	RGATCY	1 cut(s)	622
RsaI	GTAC	5 cut(s)	233, 288, 453, 539, 831
RsaNI	GTAC	5 cut(s)	232, 287, 452, 538, 830
RseI	CAYNNNNRTG	2 cut(s)	195, 494
SaqAI	TTAA	1 cut(s)	480
SatI	GCNGC	2 cut(s)	377, 866
Sau3AI	GATC	4 cut(s)	622, 630, 766, 847
Sau96I	GGNCC	1 cut(s)	757
ScrFI	CCNGG	3 cut(s)	148, 291, 440
SfaNI	GCATC	4 cut(s)	333, 435, 498, 790
SmiMI	CAYNNNNRTG	2 cut(s)	195, 494
SmlI	CTYRAG	1 cut(s)	626
SmoI	CTYRAG	1 cut(s)	626
Sse9I	AATT	5 cut(s)	4, 326, 507, 695, 800
SsiI	CCGC	3 cut(s)	30, 376, 640
StyD4I	CCNGG	3 cut(s)	146, 289, 438
StyI	CCWWGG	2 cut(s)	267, 574
TaaI	ACNGT	3 cut(s)	337, 403, 750
TaiI	ACGT	1 cut(s)	881
TaqI	TCGA	3 cut(s)	528, 675, 734
TasI	AATT	5 cut(s)	4, 326, 507, 695, 800
TatI	WGTACW	3 cut(s)	231, 537, 829
TauI	GCSGC	1 cut(s)	379
TfiI	GAWTC	4 cut(s)	603, 644, 731, 823
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	1 cut(s)	865
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	4 cut(s)	17, 101, 626, 855
TspGWI	ACGGA	1 cut(s)	469
VspI	ATTAAT	1 cut(s)	480
XapI	RAATTY	3 cut(s)	326, 695, 800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.