Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0010316

Physical Location & Seq

Genomic Coordinates Reverse (-)

68575594 .. 68580216

Gene Structure 4623 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG428000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGAATTACATAATTGGAGCATTCAAACCATCTTGCAACATTTCAATCACATTTTCTGATGCAAAAACTCGCAAGCAGGTTCCATTAAAGAAGGAAGGTGGTCAAGCAGTATCCGTCCCACTCTTTCAAAGTCAAGAAAACATTTCTGGGAAGATTTCTATTGAACCAATTCAAGGGAAAAAGGTTGAACACAATGGAGTGAAAGTTGAGCTCCTTGGTCAAATAGAGATGTACTTTGACAGAGGCAACTTTTATGACTTTACTTCCCTTGTTCGTGAACTTGATGTTCCTGGAGAGATATATGAAAGGAAGACATATCCTTTTGAGTTTTCTACAGTTGAAATGCCTTATGAGACTTACAATGGTGTCAATGTGAGGCTTAGGTATGTTTTGAAAGTCACAGTTAGTCGTGGTTATGGTGGTAGCATAGTGGAATACCAAGATTTTGTGGTTCGCAACTATACCCCACCTCCATCTATCAACAATAGCATCAAGATGGAAGTGGGAATTGAGGATTGTCTGCACATTGAGTTCGAGTATAACAAGAGCAAGTACCACCTGAAAGATGTTATTATTGGCAAGATATATTTTCTTCTTGTAAGAATCAAGATAAAGAATATGGATCTGGAGATCAGGCGTCGAGAGTCAACAGGGTCAGGGCCCAATACCCATGTTGAGACAGAGACACTTGCTAAGTTTGAATTGATGGATGGTGCTCCAGTCAGAGGTGAATCTATTCCCATTAGACTGTTTCTTAGCCCTTATGAACTGACACCTACACATCGCAACATCAACAATAAATTCAGCGTGAAGTATTATTTGAATCTTGTTTTGGTTGATGAGGAGGACCGACGATATTTCAAACAGCAAGAGATCACCATATACAGGCTTCAAGAGACTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016197 GO:0016482 GO:0030904 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042147 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Vps26

Protein Analysis

301

Amino Acids

34.9

Weight (kDa)

7.68

Isoelectric Point (pI)

48.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vps26	PF03643	8 - 283	9.9e-132	Vacuolar protein sorting-associated protein 26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27690 AT4G27690 AT5G53530
fragaria_vesca	FvH4_7g32410
malus_domestica	MD01G1225600.v1.1 MD07G1296100.v1.1
prunus_persica	Prupe.2G315700_v2.0.a1
pyrus_communis	pycom01g23400
rosa_chinensis	RchiOBHm_Chr1g0381991
rosa_laevigata	RLG00000026195
rosa_multiflora	Rmu_co8508943.1_g000001 Rmu_sc0000110.1_g000002 Rmu_sc0009991.1_g000002
rosa_roxburghii	Rroxscaffold_4G00278280
rosa_rugosa	Rorug01G0432700
rosa_samantha	Rh1AG456000 Rh1BG413100 Rh1CG428000 Rh1DG445400
rosa_wichuraiana	Rw1G041320 Rw1G041530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	67
AclWI	GGATC	1 cut(s)	630
AcsI	RAATTY	1 cut(s)	800
AcyI	GRCGYC	1 cut(s)	637
AfaI	GTAC	2 cut(s)	233, 554
AfiI	CCNNNNNNNGG	3 cut(s)	173, 725, 885
AjnI	CCWGG	1 cut(s)	289
AjuI	GAANNNNNNNTTGG	2 cut(s)	815, 847
AluBI	AGCT	1 cut(s)	211
AluI	AGCT	1 cut(s)	211
Alw21I	GWGCWC	2 cut(s)	213, 718
Alw26I	GTCTC	4 cut(s)	347, 671, 677, 890
AlwI	GGATC	1 cut(s)	630
AoxI	GGCC	1 cut(s)	659
ApaI	GGGCCC	1 cut(s)	663
ApoI	RAATTY	1 cut(s)	800
Asp700I	GAANNNNTTC	2 cut(s)	168, 735
AspS9I	GGNCC	3 cut(s)	659, 660, 847
AsuHPI	GGTGA	2 cut(s)	740, 868
AvaII	GGWCC	1 cut(s)	847
BaeGI	GKGCMC	1 cut(s)	663
BanII	GRGCYC	2 cut(s)	213, 663
BbsI	GAAGAC	1 cut(s)	317
Bbv12I	GWGCWC	2 cut(s)	213, 718
BccI	CCATC	5 cut(s)	37, 481, 490, 700, 704
BciT130I	CCWGG	1 cut(s)	291
BciVI	GTATCC	1 cut(s)	121
BcoDI	GTCTC	4 cut(s)	347, 671, 677, 890
BfmI	CTRYAG	1 cut(s)	333
BfuAI	ACCTGC	1 cut(s)	67
BfuI	GTATCC	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	1 cut(s)	847
BmgT120I	GGNCC	3 cut(s)	659, 660, 847
BmiI	GGNNCC	2 cut(s)	81, 661
BmrFI	CCNGG	1 cut(s)	291
BmsI	GCATC	2 cut(s)	49, 498
BpiI	GAAGAC	1 cut(s)	317
BpmI	CTGGAG	3 cut(s)	312, 647, 702
Bpu10I	CCTNAGC	1 cut(s)	380
BsaHI	GRCGYC	1 cut(s)	637
BsaJI	CCNNGG	1 cut(s)	214
BsaXI	ACNNNNNCTCC	4 cut(s)	189, 219, 454, 484
Bsc4I	CCNNNNNNNGG	3 cut(s)	173, 725, 885
Bse1I	ACTGG	1 cut(s)	719
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	214
BseGI	GGATG	1 cut(s)	715
BseLI	CCNNNNNNNGG	3 cut(s)	173, 725, 885
BseNI	ACTGG	1 cut(s)	719
BseRI	GAGGAG	1 cut(s)	857
BseSI	GKGCMC	1 cut(s)	663
BsgI	GTGCAG	1 cut(s)	506
BshFI	GGCC	1 cut(s)	661
BsiHKAI	GWGCWC	2 cut(s)	213, 718
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	3 cut(s)	173, 725, 885
BsmAI	GTCTC	4 cut(s)	347, 671, 677, 890
BsmFI	GGGAC	1 cut(s)	101
BsmI	GAATGC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	661
Bsp120I	GGGCCC	1 cut(s)	659
Bsp1286I	GDGCHC	3 cut(s)	213, 663, 718
Bsp143I	GATC	3 cut(s)	622, 630, 873
BspANI	GGCC	1 cut(s)	661
BspHI	TCATGA	1 cut(s)	902
BspLI	GGNNCC	2 cut(s)	81, 661
BspMI	ACCTGC	1 cut(s)	67
BspPI	GGATC	1 cut(s)	630
BsrI	ACTGG	1 cut(s)	719
BssECI	CCNNGG	1 cut(s)	214
BssMI	GATC	3 cut(s)	622, 630, 873
BssNI	GRCGYC	1 cut(s)	637
BssT1I	CCWWGG	1 cut(s)	214
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	3 cut(s)	337, 403, 750
BstACI	GRCGYC	1 cut(s)	637
BstC8I	GCNNGC	1 cut(s)	74
BstDEI	CTNAG	3 cut(s)	380, 693, 755
BstF5I	GGATG	1 cut(s)	715
BstKTI	GATC	3 cut(s)	625, 633, 876
BstMAI	GTCTC	4 cut(s)	347, 671, 677, 890
BstMBI	GATC	3 cut(s)	622, 630, 873
BstNI	CCWGG	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	1 cut(s)	333
BstSLI	GKGCMC	1 cut(s)	663
BstV2I	GAAGAC	1 cut(s)	317
BstX2I	RGATCY	1 cut(s)	622
BstYI	RGATCY	1 cut(s)	622
BsuI	GTATCC	1 cut(s)	121
BsuRI	GGCC	1 cut(s)	661
BtgZI	GCGATG	1 cut(s)	767
BtsCI	GGATG	1 cut(s)	715
BveI	ACCTGC	1 cut(s)	67
Cac8I	GCNNGC	1 cut(s)	74
CciI	TCATGA	1 cut(s)	902
Cfr13I	GGNCC	3 cut(s)	659, 660, 847
CseI	GACGC	1 cut(s)	626
Csp6I	GTAC	2 cut(s)	232, 553
CviAII	CATG	2 cut(s)	671, 903
CviJI	RGCY	5 cut(s)	211, 379, 661, 759, 889
CviKI_1	RGCY	5 cut(s)	211, 379, 661, 759, 889
CviQI	GTAC	2 cut(s)	232, 553
DdeI	CTNAG	3 cut(s)	380, 693, 755
DpnI	GATC	3 cut(s)	624, 632, 875
DpnII	GATC	3 cut(s)	622, 630, 873
Ecl136II	GAGCTC	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	214
Eco24I	GRGCYC	2 cut(s)	213, 663
Eco47I	GGWCC	1 cut(s)	847
Eco53kI	GAGCTC	1 cut(s)	211
EcoICRI	GAGCTC	1 cut(s)	211
EcoO109I	RGGNCCY	1 cut(s)	659
EcoRII	CCWGG	1 cut(s)	289
EcoT14I	CCWWGG	1 cut(s)	214
EcoT38I	GRGCYC	2 cut(s)	213, 663
ErhI	CCWWGG	1 cut(s)	214
FaeI	CATG	2 cut(s)	674, 906
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	2 cut(s)	670, 902
FokI	GGATG	1 cut(s)	722
FriOI	GRGCYC	2 cut(s)	213, 663
GsuI	CTGGAG	3 cut(s)	312, 647, 702
HaeIII	GGCC	1 cut(s)	661
HgaI	GACGC	1 cut(s)	626
Hin1I	GRCGYC	1 cut(s)	637
Hin1II	CATG	2 cut(s)	674, 906
HincII	GTYRAC	1 cut(s)	648
HindII	GTYRAC	1 cut(s)	648
HinfI	GANTC	4 cut(s)	603, 644, 731, 823
HphI	GGTGA	2 cut(s)	740, 868
Hpy166II	GTNNAC	2 cut(s)	278, 648
Hpy188I	TCNGA	2 cut(s)	58, 725
Hpy188III	TCNNGA	8 cut(s)	134, 275, 493, 607, 626, 641, 893, 903
Hpy8I	GTNNAC	2 cut(s)	278, 648
Hpy99I	CGWCG	2 cut(s)	642, 855
HpyAV	CCTTC	2 cut(s)	85, 89
HpyCH4III	ACNGT	3 cut(s)	337, 403, 750
HpyCH4V	TGCA	3 cut(s)	36, 62, 523
HpyF3I	CTNAG	3 cut(s)	380, 693, 755
Hsp92I	GRCGYC	1 cut(s)	637
Hsp92II	CATG	2 cut(s)	674, 906
Kzo9I	GATC	3 cut(s)	622, 630, 873
LmnI	GCTCC	3 cut(s)	17, 216, 721
LweI	GCATC	2 cut(s)	49, 498
MaeIII	GTNAC	1 cut(s)	397
MalI	GATC	3 cut(s)	624, 632, 875
MboI	GATC	3 cut(s)	622, 630, 873
MboII	GAAGA	3 cut(s)	163, 322, 584
MflI	RGATCY	1 cut(s)	622
MhlI	GDGCHC	3 cut(s)	213, 663, 718
MluCI	AATT	6 cut(s)	4, 12, 168, 507, 701, 800
MlyI	GAGTC	1 cut(s)	653
MnlI	CCTC	7 cut(s)	236, 369, 480, 505, 719, 835, 838
MroXI	GAANNNNTTC	2 cut(s)	168, 735
MseI	TTAA	1 cut(s)	86
MslI	CAYNNNNRTG	1 cut(s)	494
MspR9I	CCNGG	1 cut(s)	291
Mva1269I	GAATGC	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	291
NdeII	GATC	3 cut(s)	622, 630, 873
NlaIII	CATG	2 cut(s)	674, 906
NlaIV	GGNNCC	2 cut(s)	81, 661
NmuCI	GTSAC	1 cut(s)	397
PagI	TCATGA	1 cut(s)	902
PctI	GAATGC	1 cut(s)	20
PdmI	GAANNNNTTC	2 cut(s)	168, 735
PfeI	GAWTC	3 cut(s)	603, 731, 823
PfoI	TCCNGGA	1 cut(s)	289
PleI	GAGTC	1 cut(s)	652
PpsI	GAGTC	1 cut(s)	652
Psp124BI	GAGCTC	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	2 cut(s)	81, 661
PspOMI	GGGCCC	1 cut(s)	659
PspPI	GGNCC	3 cut(s)	659, 660, 847
PsuI	RGATCY	1 cut(s)	622
RsaI	GTAC	2 cut(s)	233, 554
RsaNI	GTAC	2 cut(s)	232, 553
RseI	CAYNNNNRTG	1 cut(s)	494
SacI	GAGCTC	1 cut(s)	213
SaqAI	TTAA	1 cut(s)	86
Sau3AI	GATC	3 cut(s)	622, 630, 873
Sau96I	GGNCC	3 cut(s)	659, 660, 847
SchI	GAGTC	1 cut(s)	653
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	3 cut(s)	213, 663, 718
SetI	ASST	9 cut(s)	81, 100, 186, 213, 386, 472, 561, 730, 778
SfaNI	GCATC	2 cut(s)	49, 498
SfcI	CTRYAG	1 cut(s)	333
SinI	GGWCC	1 cut(s)	847
SmiMI	CAYNNNNRTG	1 cut(s)	494
Sse9I	AATT	6 cut(s)	4, 12, 168, 507, 701, 800
SstI	GAGCTC	1 cut(s)	213
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	1 cut(s)	214
TaaI	ACNGT	3 cut(s)	337, 403, 750
TaqI	TCGA	2 cut(s)	534, 640
TaqII	GACCGA	1 cut(s)	864
TasI	AATT	6 cut(s)	4, 12, 168, 507, 701, 800
TatI	WGTACW	1 cut(s)	231
TfiI	GAWTC	3 cut(s)	603, 731, 823
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TseFI	GTSAC	1 cut(s)	397
Tsp45I	GTSAC	1 cut(s)	397
TspDTI	ATGAA	4 cut(s)	17, 318, 780, 891
TspGWI	ACGGA	1 cut(s)	103
VpaK11BI	GGWCC	1 cut(s)	847
XapI	RAATTY	1 cut(s)	800
XmnI	GAANNNNTTC	2 cut(s)	168, 735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.