Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8508943.1

Orthogroup ID

OG0010316

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1403

Gene Structure 1403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8508943.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

gttcgcaactataccccacctccatctatcaacaatagcatcaagatggaagtgggaattgaggattgtctgcacattgagttcgagtataacaagagcaagtaccacctgaaagatgttattattggcaagatatattttcttcttgtaagaatcaagataaagaatatggatctggagatcaggcgtcgagagtcaacagggtcagggcccaatacccatgttgagacagagacacttgctaagtttgaattgatggatggtgctccagtcagaggtgaatctattcccattagactgtttcttagcccttatgaactgacacctacacatcgcaacatcaacaataaattcagcgtgaagtattatttgaatcttgttttggttgatgaggaggaccgacgatatttcaaacagcaagagatcactatatacaggcttcaagagacttcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016197 GO:0016482 GO:0030904 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042147 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Vps26

Protein Analysis

151

Amino Acids

17.82

Weight (kDa)

7.97

Isoelectric Point (pI)

57.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27690 AT4G27690 AT5G53530
fragaria_vesca	FvH4_7g32410
malus_domestica	MD01G1225600.v1.1 MD07G1296100.v1.1
prunus_persica	Prupe.2G315700_v2.0.a1
pyrus_communis	pycom01g23400
rosa_chinensis	RchiOBHm_Chr1g0381991
rosa_laevigata	RLG00000026195
rosa_multiflora	Rmu_co8508943.1_g000001 Rmu_sc0000110.1_g000002 Rmu_sc0009991.1_g000002
rosa_roxburghii	Rroxscaffold_4G00278280
rosa_rugosa	Rorug01G0432700
rosa_samantha	Rh1AG456000 Rh1BG413100 Rh1CG428000 Rh1DG445400
rosa_wichuraiana	Rw1G041320 Rw1G041530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	180
AcsI	RAATTY	1 cut(s)	350
AcyI	GRCGYC	1 cut(s)	187
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	1 cut(s)	275
AgsI	TTSAA	4 cut(s)	251, 373, 412, 443
AjuI	GAANNNNNNNTTGG	2 cut(s)	365, 397
Alw21I	GWGCWC	1 cut(s)	268
Alw26I	GTCTC	3 cut(s)	221, 227, 440
AlwI	GGATC	1 cut(s)	180
AoxI	GGCC	1 cut(s)	209
ApaI	GGGCCC	1 cut(s)	213
ApoI	RAATTY	1 cut(s)	350
Asp700I	GAANNNNTTC	1 cut(s)	285
AspS9I	GGNCC	3 cut(s)	209, 210, 397
AsuHPI	GGTGA	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	397
BaeGI	GKGCMC	1 cut(s)	213
BanII	GRGCYC	1 cut(s)	213
Bbv12I	GWGCWC	1 cut(s)	268
BccI	CCATC	4 cut(s)	31, 40, 250, 254
BcoDI	GTCTC	3 cut(s)	221, 227, 440
Bme18I	GGWCC	1 cut(s)	397
BmgT120I	GGNCC	3 cut(s)	209, 210, 397
BmiI	GGNNCC	1 cut(s)	211
BmsI	GCATC	1 cut(s)	48
BpmI	CTGGAG	2 cut(s)	197, 252
BsaHI	GRCGYC	1 cut(s)	187
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	269
BseGI	GGATG	1 cut(s)	265
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseNI	ACTGG	1 cut(s)	269
BseRI	GAGGAG	1 cut(s)	407
BseSI	GKGCMC	1 cut(s)	213
BsgI	GTGCAG	1 cut(s)	56
BshFI	GGCC	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	268
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmAI	GTCTC	3 cut(s)	221, 227, 440
BsnI	GGCC	1 cut(s)	211
Bsp120I	GGGCCC	1 cut(s)	209
Bsp1286I	GDGCHC	2 cut(s)	213, 268
Bsp143I	GATC	3 cut(s)	172, 180, 423
BspANI	GGCC	1 cut(s)	211
BspHI	TCATGA	1 cut(s)	452
BspLI	GGNNCC	1 cut(s)	211
BspPI	GGATC	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	269
BssMI	GATC	3 cut(s)	172, 180, 423
BssNI	GRCGYC	1 cut(s)	187
Bst4CI	ACNGT	1 cut(s)	300
BstACI	GRCGYC	1 cut(s)	187
BstDEI	CTNAG	2 cut(s)	243, 305
BstF5I	GGATG	1 cut(s)	265
BstKTI	GATC	3 cut(s)	175, 183, 426
BstMAI	GTCTC	3 cut(s)	221, 227, 440
BstMBI	GATC	3 cut(s)	172, 180, 423
BstSLI	GKGCMC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
BsuRI	GGCC	1 cut(s)	211
BtgZI	GCGATG	1 cut(s)	317
BtsCI	GGATG	1 cut(s)	265
CciI	TCATGA	1 cut(s)	452
Cfr13I	GGNCC	3 cut(s)	209, 210, 397
CseI	GACGC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	2 cut(s)	221, 453
CviJI	RGCY	3 cut(s)	211, 309, 439
CviKI_1	RGCY	3 cut(s)	211, 309, 439
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	2 cut(s)	243, 305
DpnI	GATC	3 cut(s)	174, 182, 425
DpnII	GATC	3 cut(s)	172, 180, 423
Eco24I	GRGCYC	1 cut(s)	213
Eco47I	GGWCC	1 cut(s)	397
EcoO109I	RGGNCCY	1 cut(s)	209
EcoT38I	GRGCYC	1 cut(s)	213
FaeI	CATG	2 cut(s)	224, 456
FaiI	YATR	9 cut(s)	12, 90, 136, 170, 222, 315, 431, 433, 454
FatI	CATG	2 cut(s)	220, 452
FokI	GGATG	1 cut(s)	272
FriOI	GRGCYC	1 cut(s)	213
GsuI	CTGGAG	2 cut(s)	197, 252
HaeIII	GGCC	1 cut(s)	211
HgaI	GACGC	1 cut(s)	176
Hin1I	GRCGYC	1 cut(s)	187
Hin1II	CATG	2 cut(s)	224, 456
HincII	GTYRAC	1 cut(s)	198
HindII	GTYRAC	1 cut(s)	198
HinfI	GANTC	4 cut(s)	153, 194, 281, 373
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	1 cut(s)	198
Hpy188I	TCNGA	1 cut(s)	275
Hpy188III	TCNNGA	6 cut(s)	43, 157, 176, 191, 443, 453
Hpy8I	GTNNAC	1 cut(s)	198
Hpy99I	CGWCG	2 cut(s)	192, 405
HpyCH4III	ACNGT	1 cut(s)	300
HpyCH4V	TGCA	1 cut(s)	73
HpyF3I	CTNAG	2 cut(s)	243, 305
Hsp92I	GRCGYC	1 cut(s)	187
Hsp92II	CATG	2 cut(s)	224, 456
Kzo9I	GATC	3 cut(s)	172, 180, 423
LmnI	GCTCC	1 cut(s)	271
LpnPI	CCDG	7 cut(s)	122, 161, 169, 186, 192, 282, 421
LweI	GCATC	1 cut(s)	48
MalI	GATC	3 cut(s)	174, 182, 425
MboI	GATC	3 cut(s)	172, 180, 423
MboII	GAAGA	1 cut(s)	134
MflI	RGATCY	1 cut(s)	172
MhlI	GDGCHC	2 cut(s)	213, 268
MluCI	AATT	3 cut(s)	57, 251, 350
MlyI	GAGTC	1 cut(s)	203
MnlI	CCTC	5 cut(s)	30, 55, 269, 385, 388
MroXI	GAANNNNTTC	1 cut(s)	285
MslI	CAYNNNNRTG	1 cut(s)	44
NdeII	GATC	3 cut(s)	172, 180, 423
NlaIII	CATG	2 cut(s)	224, 456
NlaIV	GGNNCC	1 cut(s)	211
PagI	TCATGA	1 cut(s)	452
PdmI	GAANNNNTTC	1 cut(s)	285
PfeI	GAWTC	3 cut(s)	153, 281, 373
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
PspN4I	GGNNCC	1 cut(s)	211
PspOMI	GGGCCC	1 cut(s)	209
PspPI	GGNCC	3 cut(s)	209, 210, 397
PsuI	RGATCY	1 cut(s)	172
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
RseI	CAYNNNNRTG	1 cut(s)	44
Sau3AI	GATC	3 cut(s)	172, 180, 423
Sau96I	GGNCC	3 cut(s)	209, 210, 397
SchI	GAGTC	1 cut(s)	203
SduI	GDGCHC	2 cut(s)	213, 268
SetI	ASST	4 cut(s)	22, 111, 280, 328
SfaNI	GCATC	1 cut(s)	48
SinI	GGWCC	1 cut(s)	397
SmiMI	CAYNNNNRTG	1 cut(s)	44
Sse9I	AATT	3 cut(s)	57, 251, 350
TaaI	ACNGT	1 cut(s)	300
TaqI	TCGA	2 cut(s)	84, 190
TaqII	GACCGA	1 cut(s)	414
TasI	AATT	3 cut(s)	57, 251, 350
TfiI	GAWTC	3 cut(s)	153, 281, 373
TspDTI	ATGAA	2 cut(s)	330, 441
VpaK11BI	GGWCC	1 cut(s)	397
XapI	RAATTY	1 cut(s)	350
XmnI	GAANNNNTTC	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.