Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010316

Physical Location & Seq

Genomic Coordinates Reverse (-)

21745937 .. 21748719

Gene Structure 2783 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G53530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGAATTATCTTCTTGGAGCTTTCAAGCCAGCATGTAATATTTCAATCACATTTACTGATGGGAAAAACCGTAAACAGGTACCCACTAAGAAAGATAATGGACAAATAGTTATGAATCCACTTTTCCAGAGTCAAGAAACTATTGCTGGGAAGATTAACATTGAACCATATCAAGGGAAAAAAGTGGAGCATAATGGTGTAAAAGTTGAGCTTCTTGGTCAAATAGAAATGTACTTTGACAGAGGAAACTTTTATGACTTCACTTCCTTGGTGCGTGAGATTGATGTACCTGGAGAAATATATGAAAGAAAGACATACCCTTTTGAATTTTCGAGCGTTGAGATGCCATATGAGACATACAATGGCGTGAACGTGCGCCTAAGGTATGTCCTCAAAGTAACAGTCACACGTGGTTATGCTGGAAGCATCGTGGAATACCAGGACTTTGTGGTCCGTAACTATGTTCCGCTTCCTCCAATCAATAATAGCATTAAGATGGAAGTTGGAATCGAGGACTGTCTGCATATCGAGTTTGAGTACAATAAAAGCAAGTATCACCTAAAAGATGTTATCCTTGGGAAAATATACTTTCTTCTGGTGAGAATCAAGATAAAGAATATGGATCTTGAGATAAGACGGCGAGAATCAACTGGAGCAGGAGCTAATACTCACGTCGAAACAGAAACACTAGCCAAATTTGAGTTAATGGATGGTGCTCCAGTTAGAGGCGAATCGATACCTGTAAGAGTGTTCTTGACACCATACGATCTGACACCAACGCATAAGAACATAAACAACAAATTCAGCGTAAAGTATTATCTAAATCTTGTGCTGGTGGATGAAGAGGATCGCCGTTACTTCAAGCAGCAAGAAATCACGTTGTACAGGCTCAAGGAAGAGACATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016197 GO:0016482 GO:0030904 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042147 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Vps26

Protein Analysis

302

Amino Acids

35.15

Weight (kDa)

7.67

Isoelectric Point (pI)

47.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vps26	PF03643	8 - 283	1.2e-132	Vacuolar protein sorting-associated protein 26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27690 AT4G27690 AT5G53530
fragaria_vesca	FvH4_7g32410
malus_domestica	MD01G1225600.v1.1 MD07G1296100.v1.1
prunus_persica	Prupe.2G315700_v2.0.a1
pyrus_communis	pycom01g23400
rosa_chinensis	RchiOBHm_Chr1g0381991
rosa_laevigata	RLG00000026195
rosa_multiflora	Rmu_co8508943.1_g000001 Rmu_sc0000110.1_g000002 Rmu_sc0009991.1_g000002
rosa_roxburghii	Rroxscaffold_4G00278280
rosa_rugosa	Rorug01G0432700
rosa_samantha	Rh1AG456000 Rh1BG413100 Rh1CG428000 Rh1DG445400
rosa_wichuraiana	Rw1G041320 Rw1G041530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	449
Acc65I	GGTACC	1 cut(s)	79
AccB1I	GGYRCC	1 cut(s)	79
AciI	CCGC	1 cut(s)	467
AclWI	GGATC	2 cut(s)	630, 855
AcsI	RAATTY	3 cut(s)	326, 695, 800
AcvI	CACGTG	1 cut(s)	410
AfaI	GTAC	5 cut(s)	81, 233, 288, 539, 884
AfiI	CCNNNNNNNGG	3 cut(s)	76, 173, 725
AflIII	ACRYGT	1 cut(s)	407
AgsI	TTSAA	5 cut(s)	25, 45, 164, 326, 862
AjiI	CACGTC	1 cut(s)	673
AjnI	CCWGG	2 cut(s)	289, 438
AluBI	AGCT	3 cut(s)	20, 211, 662
AluI	AGCT	3 cut(s)	20, 211, 662
Alw21I	GWGCWC	1 cut(s)	718
Alw26I	GTCTC	2 cut(s)	347, 893
AlwI	GGATC	2 cut(s)	630, 855
ApeKI	GCWGC	1 cut(s)	865
ApoI	RAATTY	3 cut(s)	326, 695, 800
ArsI	GACNNNNNNTTYG	2 cut(s)	387, 419
Asp718I	GGTACC	1 cut(s)	79
AspLEI	GCGC	1 cut(s)	378
AspS9I	GGNCC	1 cut(s)	451
AsuHPI	GGTGA	2 cut(s)	548, 610
AvaII	GGWCC	1 cut(s)	451
AxyI	CCTNAGG	1 cut(s)	380
BanI	GGYRCC	1 cut(s)	79
BbrPI	CACGTG	1 cut(s)	410
Bbv12I	GWGCWC	1 cut(s)	718
BbvI	GCAGC	1 cut(s)	877
BccI	CCATC	3 cut(s)	53, 490, 704
BceAI	ACGGC	2 cut(s)	653, 837
BciT130I	CCWGG	2 cut(s)	291, 440
BcoDI	GTCTC	2 cut(s)	347, 893
BfaI	CTAG	1 cut(s)	689
BisI	GCNGC	1 cut(s)	866
BlsI	GCNGC	1 cut(s)	867
Bme1390I	CCNGG	2 cut(s)	291, 440
Bme18I	GGWCC	1 cut(s)	451
BmgBI	CACGTC	1 cut(s)	673
BmgT120I	GGNCC	1 cut(s)	451
BmiI	GGNNCC	1 cut(s)	81
BmrFI	CCNGG	2 cut(s)	291, 440
BmsI	GCATC	2 cut(s)	333, 435
BpmI	CTGGAG	3 cut(s)	312, 672, 702
BpuEI	CTTGAG	2 cut(s)	647, 875
Bsa29I	ATCGAT	1 cut(s)	734
BsaAI	YACGTR	1 cut(s)	410
BsaJI	CCNNGG	2 cut(s)	267, 574
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 173, 725
Bse1I	ACTGG	2 cut(s)	655, 719
Bse21I	CCTNAGG	1 cut(s)	380
BseBI	CCWGG	2 cut(s)	291, 440
BseCI	ATCGAT	1 cut(s)	734
BseDI	CCNNGG	2 cut(s)	267, 574
BseGI	GGATG	2 cut(s)	715, 844
BseLI	CCNNNNNNNGG	3 cut(s)	76, 173, 725
BseNI	ACTGG	2 cut(s)	655, 719
BseXI	GCAGC	1 cut(s)	877
BseYI	CCCAGC	1 cut(s)	146
BshNI	GGYRCC	1 cut(s)	79
BshVI	ATCGAT	1 cut(s)	734
BsiHKAI	GWGCWC	1 cut(s)	718
BslI	CCNNNNNNNGG	3 cut(s)	76, 173, 725
BsmAI	GTCTC	2 cut(s)	347, 893
Bsp1286I	GDGCHC	1 cut(s)	718
Bsp1407I	TGTACA	1 cut(s)	882
Bsp143I	GATC	3 cut(s)	622, 766, 847
BspACI	CCGC	1 cut(s)	467
BspDI	ATCGAT	1 cut(s)	734
BspLI	GGNNCC	1 cut(s)	81
BspPI	GGATC	2 cut(s)	630, 855
BspT107I	GGYRCC	1 cut(s)	79
BsrGI	TGTACA	1 cut(s)	882
BsrI	ACTGG	2 cut(s)	655, 719
BssECI	CCNNGG	2 cut(s)	267, 574
BssMI	GATC	3 cut(s)	622, 766, 847
BssT1I	CCWWGG	2 cut(s)	267, 574
Bst2UI	CCWGG	2 cut(s)	291, 440
Bst4CI	ACNGT	3 cut(s)	71, 403, 518
Bst6I	CTCTTC	2 cut(s)	837, 891
BstAUI	TGTACA	1 cut(s)	882
BstBAI	YACGTR	1 cut(s)	410
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	2 cut(s)	87, 380
BstF5I	GGATG	2 cut(s)	715, 844
BstHHI	GCGC	1 cut(s)	378
BstKTI	GATC	3 cut(s)	625, 769, 850
BstMAI	GTCTC	2 cut(s)	347, 893
BstMBI	GATC	3 cut(s)	622, 766, 847
BstNI	CCWGG	2 cut(s)	291, 440
BstNSI	RCATGY	1 cut(s)	36
BstSCI	CCNGG	2 cut(s)	289, 438
BstV1I	GCAGC	1 cut(s)	877
BstX2I	RGATCY	1 cut(s)	622
BstYI	RGATCY	1 cut(s)	622
Bsu15I	ATCGAT	1 cut(s)	734
Bsu36I	CCTNAGG	1 cut(s)	380
BsuTUI	ATCGAT	1 cut(s)	734
BtrI	CACGTC	1 cut(s)	673
BtsCI	GGATG	2 cut(s)	715, 844
Cac8I	GCNNGC	1 cut(s)	30
CfoI	GCGC	1 cut(s)	378
Cfr13I	GGNCC	1 cut(s)	451
ClaI	ATCGAT	1 cut(s)	734
Csp6I	GTAC	5 cut(s)	80, 232, 287, 538, 883
CviAII	CATG	1 cut(s)	33
CviJI	RGCY	6 cut(s)	20, 28, 211, 662, 692, 889
CviKI_1	RGCY	6 cut(s)	20, 28, 211, 662, 692, 889
CviQI	GTAC	5 cut(s)	80, 232, 287, 538, 883
DdeI	CTNAG	2 cut(s)	87, 380
DpnI	GATC	3 cut(s)	624, 768, 849
DpnII	GATC	3 cut(s)	622, 766, 847
DrdI	GACNNNNNNGTC	1 cut(s)	449
DseDI	GACNNNNNNGTC	1 cut(s)	449
Eam1104I	CTCTTC	2 cut(s)	837, 891
EarI	CTCTTC	2 cut(s)	837, 891
Eco130I	CCWWGG	2 cut(s)	267, 574
Eco47I	GGWCC	1 cut(s)	451
Eco72I	CACGTG	1 cut(s)	410
Eco81I	CCTNAGG	1 cut(s)	380
EcoRII	CCWGG	2 cut(s)	289, 438
EcoT14I	CCWWGG	2 cut(s)	267, 574
ErhI	CCWWGG	2 cut(s)	267, 574
FaeI	CATG	1 cut(s)	36
FalI	AAGNNNNNCTT	2 cut(s)	195, 227
FatI	CATG	1 cut(s)	32
FauNDI	CATATG	1 cut(s)	349
Fnu4HI	GCNGC	1 cut(s)	866
FokI	GGATG	2 cut(s)	722, 851
Fsp4HI	GCNGC	1 cut(s)	866
FspBI	CTAG	1 cut(s)	689
GlaI	GCGC	1 cut(s)	377
GluI	GCNGC	1 cut(s)	866
GsaI	CCCAGC	1 cut(s)	150
GsuI	CTGGAG	3 cut(s)	312, 672, 702
HhaI	GCGC	1 cut(s)	378
Hin1II	CATG	1 cut(s)	36
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HinfI	GANTC	6 cut(s)	115, 130, 507, 603, 644, 731
HphI	GGTGA	2 cut(s)	548, 610
Hpy166II	GTNNAC	2 cut(s)	74, 370
Hpy188I	TCNGA	1 cut(s)	771
Hpy188III	TCNNGA	6 cut(s)	127, 134, 607, 626, 754, 906
Hpy8I	GTNNAC	2 cut(s)	74, 370
Hpy99I	CGWCG	1 cut(s)	677
HpyCH4III	ACNGT	3 cut(s)	71, 403, 518
HpyCH4IV	ACGT	4 cut(s)	372, 409, 672, 878
HpyCH4V	TGCA	1 cut(s)	523
HpyF3I	CTNAG	2 cut(s)	87, 380
HpySE526I	ACGT	4 cut(s)	372, 409, 672, 878
Hsp92II	CATG	1 cut(s)	36
HspAI	GCGC	1 cut(s)	376
KpnI	GGTACC	1 cut(s)	83
Kzo9I	GATC	3 cut(s)	622, 766, 847
LmnI	GCTCC	5 cut(s)	17, 187, 653, 659, 721
Lsp1109I	GCAGC	1 cut(s)	877
LweI	GCATC	2 cut(s)	333, 435
MaeI	CTAG	1 cut(s)	689
MaeII	ACGT	4 cut(s)	372, 409, 672, 878
MaeIII	GTNAC	4 cut(s)	397, 403, 455, 854
MalI	GATC	3 cut(s)	624, 768, 849
MboI	GATC	3 cut(s)	622, 766, 847
MboII	GAAGA	4 cut(s)	163, 584, 854, 908
MflI	RGATCY	1 cut(s)	622
MhlI	GDGCHC	1 cut(s)	718
MluCI	AATT	4 cut(s)	4, 326, 695, 800
MlyI	GAGTC	1 cut(s)	139
MmeI	TCCRAC	1 cut(s)	484
MnlI	CCTC	6 cut(s)	236, 401, 483, 505, 719, 838
MseI	TTAA	3 cut(s)	156, 492, 704
MslI	CAYNNNNRTG	2 cut(s)	195, 494
MspR9I	CCNGG	2 cut(s)	291, 440
MvaI	CCWGG	2 cut(s)	291, 440
NdeI	CATATG	1 cut(s)	349
NdeII	GATC	3 cut(s)	622, 766, 847
NlaIII	CATG	1 cut(s)	36
NlaIV	GGNNCC	1 cut(s)	81
NmuCI	GTSAC	1 cut(s)	403
NspI	RCATGY	1 cut(s)	36
PfeI	GAWTC	5 cut(s)	115, 507, 603, 644, 731
PkrI	GCNGC	1 cut(s)	867
PleI	GAGTC	1 cut(s)	138
PmaCI	CACGTG	1 cut(s)	410
PmlI	CACGTG	1 cut(s)	410
PpsI	GAGTC	1 cut(s)	138
Ppu21I	YACGTR	1 cut(s)	410
Psp6I	CCWGG	2 cut(s)	289, 438
PspCI	CACGTG	1 cut(s)	410
PspFI	CCCAGC	1 cut(s)	146
PspGI	CCWGG	2 cut(s)	289, 438
PspN4I	GGNNCC	1 cut(s)	81
PspPI	GGNCC	1 cut(s)	451
PsuI	RGATCY	1 cut(s)	622
RsaI	GTAC	5 cut(s)	81, 233, 288, 539, 884
RsaNI	GTAC	5 cut(s)	80, 232, 287, 538, 883
RseI	CAYNNNNRTG	2 cut(s)	195, 494
SaqAI	TTAA	3 cut(s)	156, 492, 704
SatI	GCNGC	1 cut(s)	866
Sau3AI	GATC	3 cut(s)	622, 766, 847
Sau96I	GGNCC	1 cut(s)	451
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	2 cut(s)	291, 440
SduI	GDGCHC	1 cut(s)	718
SfaNI	GCATC	2 cut(s)	333, 435
SinI	GGWCC	1 cut(s)	451
SmiMI	CAYNNNNRTG	2 cut(s)	195, 494
SmlI	CTYRAG	2 cut(s)	626, 890
SmoI	CTYRAG	2 cut(s)	626, 890
Sse9I	AATT	4 cut(s)	4, 326, 695, 800
SsiI	CCGC	1 cut(s)	467
SspI	AATATT	1 cut(s)	40
SspMI	CTAG	1 cut(s)	689
StyD4I	CCNGG	2 cut(s)	289, 438
StyI	CCWWGG	2 cut(s)	267, 574
TaaI	ACNGT	3 cut(s)	71, 403, 518
TaiI	ACGT	4 cut(s)	375, 412, 675, 881
TaqI	TCGA	5 cut(s)	332, 510, 528, 675, 734
TasI	AATT	4 cut(s)	4, 326, 695, 800
TatI	WGTACW	3 cut(s)	231, 537, 882
TfiI	GAWTC	5 cut(s)	115, 507, 603, 644, 731
Tru1I	TTAA	3 cut(s)	156, 492, 704
Tru9I	TTAA	3 cut(s)	156, 492, 704
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	1 cut(s)	865
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	4 cut(s)	17, 128, 318, 855
TspGWI	ACGGA	1 cut(s)	443
VpaK11BI	GGWCC	1 cut(s)	451
XapI	RAATTY	3 cut(s)	326, 695, 800
XceI	RCATGY	1 cut(s)	36
XspI	CTAG	1 cut(s)	689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.