Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0010316

Physical Location & Seq

Genomic Coordinates Reverse (-)

20733890 .. 20735375

Gene Structure 1486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g23400.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGCCATATGAGACTTACAACGGGGTGAATGTGAGACTTAGGTATGTCCTGAAAGTCACAATTAGTCGTGGTTATGGTAGTAGCATAGTGGAATACCAGGACTTTGTGGTTCGCAACTATTCCCCACCTCCATCTATTAACAATAGCATCAAGATGGAAGTGGGAATCGAAGATTGTCTGCACATTGAGTTTGAGTACAACAAGAGCAAGTACCATCTGAAAGATGTTATTATCGGCAAGATATATTTCCTTCTTGTAAGAATCAAGATAAAGAATATGGATCTGGAGATCATGCGTGGAGAGTCAACAGGGTCGGGGCCCAATACTCATGTTGAGACAGAGACACTTGCTAAGTTTGAGTTGATGGATGGTGCTCCAGTAAGAGGTGAATCAATTCCCATTAGATTGTTTCTTAGCCCTTATGAACTCACACCAACACACCGCAACATCAATAACAAATTCAGCGTGAAGTATTATTTGAATCTTGTTCTGGTTGATGAAGAGGACCGACGGTATTTCAAGCAGCAAGAAATCACTATATACAGGCTTCAAGAGACGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016197 GO:0016482 GO:0030904 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042147 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Vps26

Protein Analysis

188

Amino Acids

21.89

Weight (kDa)

6.92

Isoelectric Point (pI)

44.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27690 AT4G27690 AT5G53530
fragaria_vesca	FvH4_7g32410
malus_domestica	MD01G1225600.v1.1 MD07G1296100.v1.1
prunus_persica	Prupe.2G315700_v2.0.a1
pyrus_communis	pycom01g23400
rosa_chinensis	RchiOBHm_Chr1g0381991
rosa_laevigata	RLG00000026195
rosa_multiflora	Rmu_co8508943.1_g000001 Rmu_sc0000110.1_g000002 Rmu_sc0009991.1_g000002
rosa_roxburghii	Rroxscaffold_4G00278280
rosa_rugosa	Rorug01G0432700
rosa_samantha	Rh1AG456000 Rh1BG413100 Rh1CG428000 Rh1DG445400
rosa_wichuraiana	Rw1G041320 Rw1G041530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	560
AciI	CCGC	1 cut(s)	442
AclWI	GGATC	1 cut(s)	288
AcsI	RAATTY	1 cut(s)	458
AcyI	GRCGYC	1 cut(s)	557
AfaI	GTAC	2 cut(s)	197, 212
AfiI	CCNNNNNNNGG	1 cut(s)	383
AgsI	TTSAA	3 cut(s)	481, 520, 551
AjnI	CCWGG	1 cut(s)	96
Alw21I	GWGCWC	1 cut(s)	376
Alw26I	GTCTC	5 cut(s)	5, 28, 329, 335, 548
AlwI	GGATC	1 cut(s)	288
AoxI	GGCC	1 cut(s)	317
ApaI	GGGCCC	1 cut(s)	321
ApeKI	GCWGC	1 cut(s)	523
ApoI	RAATTY	1 cut(s)	458
Asp700I	GAANNNNTTC	1 cut(s)	393
AspS9I	GGNCC	3 cut(s)	317, 318, 505
AsuHPI	GGTGA	2 cut(s)	37, 398
AvaII	GGWCC	1 cut(s)	505
BaeGI	GKGCMC	1 cut(s)	321
BanII	GRGCYC	1 cut(s)	321
Bbv12I	GWGCWC	1 cut(s)	376
BbvI	GCAGC	1 cut(s)	535
BccI	CCATC	5 cut(s)	139, 148, 222, 358, 362
BciT130I	CCWGG	1 cut(s)	98
BcoDI	GTCTC	5 cut(s)	5, 28, 329, 335, 548
BisI	GCNGC	1 cut(s)	524
BlsI	GCNGC	1 cut(s)	525
Bme1390I	CCNGG	1 cut(s)	98
Bme18I	GGWCC	1 cut(s)	505
BmgT120I	GGNCC	3 cut(s)	317, 318, 505
BmiI	GGNNCC	2 cut(s)	318, 319
BmrFI	CCNGG	1 cut(s)	98
BmsI	GCATC	1 cut(s)	156
BpmI	CTGGAG	2 cut(s)	305, 360
BsaHI	GRCGYC	1 cut(s)	557
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
Bse1I	ACTGG	1 cut(s)	377
BseBI	CCWGG	1 cut(s)	98
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseNI	ACTGG	1 cut(s)	377
BseSI	GKGCMC	1 cut(s)	321
BseXI	GCAGC	1 cut(s)	535
BsgI	GTGCAG	1 cut(s)	164
BshFI	GGCC	1 cut(s)	319
BsiHKAI	GWGCWC	1 cut(s)	376
BslI	CCNNNNNNNGG	1 cut(s)	383
BsmAI	GTCTC	5 cut(s)	5, 28, 329, 335, 548
BsmBI	CGTCTC	1 cut(s)	548
BsnI	GGCC	1 cut(s)	319
Bsp120I	GGGCCC	1 cut(s)	317
Bsp1286I	GDGCHC	2 cut(s)	321, 376
Bsp143I	GATC	2 cut(s)	280, 288
BspACI	CCGC	1 cut(s)	442
BspANI	GGCC	1 cut(s)	319
BspHI	TCATGA	1 cut(s)	560
BspLI	GGNNCC	2 cut(s)	318, 319
BspPI	GGATC	1 cut(s)	288
BsrI	ACTGG	1 cut(s)	377
BssMI	GATC	2 cut(s)	280, 288
BssNI	GRCGYC	1 cut(s)	557
Bst2UI	CCWGG	1 cut(s)	98
Bst4CI	ACNGT	1 cut(s)	513
Bst6I	CTCTTC	1 cut(s)	495
BstACI	GRCGYC	1 cut(s)	557
BstDEI	CTNAG	3 cut(s)	38, 351, 413
BstF5I	GGATG	1 cut(s)	373
BstKTI	GATC	2 cut(s)	283, 291
BstMAI	GTCTC	5 cut(s)	5, 28, 329, 335, 548
BstMBI	GATC	2 cut(s)	280, 288
BstNI	CCWGG	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	96
BstSLI	GKGCMC	1 cut(s)	321
BstV1I	GCAGC	1 cut(s)	535
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BsuRI	GGCC	1 cut(s)	319
BtsCI	GGATG	1 cut(s)	373
CciI	TCATGA	1 cut(s)	560
Cfr13I	GGNCC	3 cut(s)	317, 318, 505
Csp6I	GTAC	2 cut(s)	196, 211
CviAII	CATG	3 cut(s)	292, 329, 561
CviJI	RGCY	3 cut(s)	319, 417, 547
CviKI_1	RGCY	3 cut(s)	319, 417, 547
CviQI	GTAC	2 cut(s)	196, 211
DdeI	CTNAG	3 cut(s)	38, 351, 413
DpnI	GATC	2 cut(s)	282, 290
DpnII	GATC	2 cut(s)	280, 288
Eam1104I	CTCTTC	1 cut(s)	495
EarI	CTCTTC	1 cut(s)	495
Eco24I	GRGCYC	1 cut(s)	321
Eco47I	GGWCC	1 cut(s)	505
EcoO109I	RGGNCCY	1 cut(s)	317
EcoRII	CCWGG	1 cut(s)	96
EcoT38I	GRGCYC	1 cut(s)	321
Esp3I	CGTCTC	1 cut(s)	548
FaeI	CATG	3 cut(s)	295, 332, 564
FatI	CATG	3 cut(s)	291, 328, 560
FauNDI	CATATG	1 cut(s)	7
Fnu4HI	GCNGC	1 cut(s)	524
FokI	GGATG	1 cut(s)	380
FriOI	GRGCYC	1 cut(s)	321
Fsp4HI	GCNGC	1 cut(s)	524
GluI	GCNGC	1 cut(s)	524
GsuI	CTGGAG	2 cut(s)	305, 360
HaeIII	GGCC	1 cut(s)	319
Hin1I	GRCGYC	1 cut(s)	557
Hin1II	CATG	3 cut(s)	295, 332, 564
HincII	GTYRAC	1 cut(s)	306
HindII	GTYRAC	1 cut(s)	306
HinfI	GANTC	5 cut(s)	165, 261, 302, 389, 481
HphI	GGTGA	2 cut(s)	37, 398
Hpy166II	GTNNAC	1 cut(s)	306
Hpy188I	TCNGA	1 cut(s)	219
Hpy188III	TCNNGA	6 cut(s)	49, 151, 265, 284, 551, 561
Hpy8I	GTNNAC	1 cut(s)	306
Hpy99I	CGWCG	1 cut(s)	513
HpyAV	CCTTC	1 cut(s)	260
HpyCH4III	ACNGT	1 cut(s)	513
HpyCH4IV	ACGT	1 cut(s)	557
HpyCH4V	TGCA	1 cut(s)	181
HpyF3I	CTNAG	3 cut(s)	38, 351, 413
HpySE526I	ACGT	1 cut(s)	557
Hsp92I	GRCGYC	1 cut(s)	557
Hsp92II	CATG	3 cut(s)	295, 332, 564
Kzo9I	GATC	2 cut(s)	280, 288
LmnI	GCTCC	1 cut(s)	379
LpnPI	CCDG	8 cut(s)	62, 83, 110, 269, 294, 390, 476, 529
Lsp1109I	GCAGC	1 cut(s)	535
LweI	GCATC	1 cut(s)	156
MaeII	ACGT	1 cut(s)	557
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	282, 290
MboI	GATC	2 cut(s)	280, 288
MboII	GAAGA	2 cut(s)	182, 512
MflI	RGATCY	1 cut(s)	280
MhlI	GDGCHC	2 cut(s)	321, 376
MluCI	AATT	3 cut(s)	60, 393, 458
MlyI	GAGTC	1 cut(s)	311
MnlI	CCTC	3 cut(s)	138, 377, 496
MroXI	GAANNNNTTC	1 cut(s)	393
MseI	TTAA	1 cut(s)	138
MslI	CAYNNNNRTG	1 cut(s)	152
MspR9I	CCNGG	1 cut(s)	98
MvaI	CCWGG	1 cut(s)	98
NdeI	CATATG	1 cut(s)	7
NdeII	GATC	2 cut(s)	280, 288
NlaIII	CATG	3 cut(s)	295, 332, 564
NlaIV	GGNNCC	2 cut(s)	318, 319
NmuCI	GTSAC	1 cut(s)	55
PagI	TCATGA	1 cut(s)	560
PdmI	GAANNNNTTC	1 cut(s)	393
PfeI	GAWTC	4 cut(s)	165, 261, 389, 481
PkrI	GCNGC	1 cut(s)	525
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
Psp6I	CCWGG	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	96
PspN4I	GGNNCC	2 cut(s)	318, 319
PspOMI	GGGCCC	1 cut(s)	317
PspPI	GGNCC	3 cut(s)	317, 318, 505
PsuI	RGATCY	1 cut(s)	280
RsaI	GTAC	2 cut(s)	197, 212
RsaNI	GTAC	2 cut(s)	196, 211
RseI	CAYNNNNRTG	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	1 cut(s)	524
Sau3AI	GATC	2 cut(s)	280, 288
Sau96I	GGNCC	3 cut(s)	317, 318, 505
SchI	GAGTC	1 cut(s)	311
ScrFI	CCNGG	1 cut(s)	98
SduI	GDGCHC	2 cut(s)	321, 376
SetI	ASST	4 cut(s)	44, 130, 388, 560
SfaNI	GCATC	1 cut(s)	156
SinI	GGWCC	1 cut(s)	505
SmiMI	CAYNNNNRTG	1 cut(s)	152
Sse9I	AATT	3 cut(s)	60, 393, 458
SsiI	CCGC	1 cut(s)	442
StyD4I	CCNGG	1 cut(s)	96
TaaI	ACNGT	1 cut(s)	513
TaiI	ACGT	1 cut(s)	560
TaqI	TCGA	1 cut(s)	168
TaqII	GACCGA	1 cut(s)	522
TasI	AATT	3 cut(s)	60, 393, 458
TatI	WGTACW	1 cut(s)	195
TfiI	GAWTC	4 cut(s)	165, 261, 389, 481
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	523
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	438, 513
VpaK11BI	GGWCC	1 cut(s)	505
XapI	RAATTY	1 cut(s)	458
XmnI	GAANNNNTTC	1 cut(s)	393
ZraI	GACGTC	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.