AT4G28090

L-ascorbate oxidase homolog

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
13961888 .. 13964229
2342 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G28090.1

Sequence Viewer

Length: 1644 bp
ATGGAGTGGTGGTTAAACGGAGGTGTTTGGATGATGATGATGACGACGACCATCATTTCTTTTGTTAAAGCTGAAGATACCCTTTTTTACAACTGGAGGGTCACTTACGGCAAGATTGCTCTAGACACTTTGCCTCGAAGGGGAATCCTAATAAACGGACAATTTCCTGGACCGGAGATTCGCTCACTCACCAATGACAATTTGGTCATCAATGTTCAAAACGATCTCGACGATCCCTTTCTCTTATCTTGGAATGGAGTGCATATGAGGAAAAATTCTTACCAAGATGGAGTGTATGGGACGAATTGTCCAATCCCACCAGGCAAGAATTACACTTATGACTTTCAAGTCAAAGATCAGGTCGGTAGTTACTTCTACTTCCCTTCCCTCGCCGTCCAAAAAGCGGCCGGTGGTTATGGCAGCCTCCGTATATACAGCCTCCCTCGCATCCCCGTCCCTTTCCCTGAACCCGCAGAAGATTTCACCTTCCTCGTAAACGATTGGTATCGACGTAACCATACGACTTTGAAGAAAATTTTGGATGGAGGACGCAAGTTACCGTTAATGCCTGATGGGGTTATGATCAATGGCCAGGGAGTAAGTACTGTTTATTCTATCACCGTCGACAAAGGTAAAACGTACAGATTCAGAGTATCAAATGTAGGGCTTCAAACCTCCCTGAATTTAGAAATATTAGGTCATCAGCTTAAGCTCATTGAGGTCGAAGGAACCCACACGGTCCAAACCATGTACACATCACTCGACATTCATGTTGGTCAAACTTACTCTTTCTTGGTCACCATGGACCAACCTCCTCAAAACTATTCCATTGTCGTTTCCACAAGATTTATCAACGCAGAAGTTGTGATCCGAGCCACTCTCCACTACTCCAACTCCAAAGGTCATAAGATTATCACTGCGCGACGACCTGATCCAGATGATGTAGAATGGTCTATCAAACAAGCCCAGTCCATTAGGACCAACCTAACTGCGTCGGGGCCAAGGACTAACCCTCAAGGCTCATACCATTATGGTAAAATGAAGATTTCTAGGACTTTAATATTGGAAAGCTCAGCGGCTCTTGTGAAAAGAAAGCAACGCTATGCCATAAATGGCGTATCGTTCGTGCCTTCGGATACTCCGCTGAAGCTTGCGGATCATTTCAAAATAAAAGATGTTTTTAAAGTTGGAACCATCCCTGACAAGCCGAGAAGAGGAGGAGGAATAAGGCTAGACACAGCAGTGATGGGAGCACACCACAATGCTTTTCTTGAGATCATCTTTCAAAACCGCGAGAAGATCGTCCAAAGTTACCACCTCGATGGATACAACTTTTGGGTTGTTGGGATCAATAAAGGAATATGGTCACGTGCGAGCAGACGAGAGTATAACCTCAAGGATGCTATATCTCGCTCCACTACTCAAGTATATCCAAAATCTTGGACAGCTGTATATGTGGCATTGGACAATGTGGGGATGTGGAATCTAAGGAGCCAGTTCTGGGCGAGACAATACTTAGGTCAACAATTCTACCTTCGAGTTCATTCTCCAAATCACTCTCCCAAAGATGAATACCCTTTGCCAAAGAATGCTTTGTTGTGTGGTCGGGCCTCCAACAAAAACATGTCCATCATCACTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

547

Amino Acids

62.25

Weight (kDa)

9.65

Isoelectric Point (pI)

32.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 34 - 146 1.7e-37 Multicopper oxidase
Cu-oxidase PF00394 159 - 299 5.5e-43 Multicopper oxidase
Cu-oxidase_2 PF07731 379 - 517 8.3e-30 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 203, 347
AccI GTMKAC 1 cut(s) 624
AccII CGCG 2 cut(s) 922, 1293
AciI CCGC 6 cut(s) 404, 471, 1076, 1142, 1154, 1291
AclWI GGATC 5 cut(s) 227, 862, 926, 1164, 1355
AcoI YGGCCR 2 cut(s) 405, 589
AcsI RAATTY 3 cut(s) 274, 534, 682
AcuI CTGAAG 2 cut(s) 93, 1166
AcvI CACGTG 1 cut(s) 1370
AfaI GTAC 3 cut(s) 604, 641, 752
AfiI CCNNNNNNNGG 4 cut(s) 140, 403, 1214, 1501
AflII CTTAAG 1 cut(s) 707
AflIII ACRYGT 1 cut(s) 1623
AgsI TTSAA 6 cut(s) 218, 347, 529, 671, 1165, 1286
AhdI GACNNNNNGTC 1 cut(s) 306
AjnI CCWGG 3 cut(s) 166, 319, 591
AjuI GAANNNNNNNTTGG 2 cut(s) 521, 553
AleI CACNNNNGTG 1 cut(s) 1241
AluBI AGCT 6 cut(s) 71, 706, 712, 1071, 1150, 1448
AluI AGCT 6 cut(s) 71, 706, 712, 1071, 1150, 1448
Alw21I GWGCWC 1 cut(s) 1255
Alw26I GTCTC 1 cut(s) 1501
AlwI GGATC 5 cut(s) 227, 862, 926, 1164, 1355
AoxI GGCC 4 cut(s) 405, 589, 998, 1608
ApeKI GCWGC 1 cut(s) 420
ApoI RAATTY 3 cut(s) 274, 534, 682
ArsI GACNNNNNNTTYG 4 cut(s) 162, 194, 345, 377
AspLEI GCGC 1 cut(s) 922
AspS9I GGNCC 6 cut(s) 170, 739, 805, 978, 998, 1608
AsuHPI GGTGA 4 cut(s) 181, 475, 610, 790
AvaII GGWCC 4 cut(s) 170, 739, 805, 978
BalI TGGCCA 1 cut(s) 591
BbrPI CACGTG 1 cut(s) 1370
Bbv12I GWGCWC 1 cut(s) 1255
BbvI GCAGC 1 cut(s) 432
BccI CCATC 8 cut(s) 59, 281, 536, 566, 1202, 1240, 1316, 1637
BceAI ACGGC 2 cut(s) 124, 377
BciT130I CCWGG 3 cut(s) 168, 321, 593
BciVI GTATCC 2 cut(s) 1129, 1319
BclI TGATCA 1 cut(s) 582
BcoDI GTCTC 1 cut(s) 1501
BfaI CTAG 3 cut(s) 122, 1050, 1232
BfrI CTTAAG 1 cut(s) 707
BfuI GTATCC 2 cut(s) 1129, 1319
BisI GCNGC 3 cut(s) 405, 421, 1077
BlpI GCTNAGC 1 cut(s) 1072
BlsI GCNGC 3 cut(s) 406, 422, 1078
BmcAI AGTACT 1 cut(s) 604
Bme1390I CCNGG 3 cut(s) 168, 321, 593
Bme18I GGWCC 4 cut(s) 170, 739, 805, 978
BmeRI GACNNNNNGTC 1 cut(s) 306
BmgT120I GGNCC 6 cut(s) 170, 739, 805, 978, 998, 1608
BmiI GGNNCC 4 cut(s) 730, 999, 1192, 1493
BmrFI CCNGG 3 cut(s) 168, 321, 593
BmrI ACTGGG 1 cut(s) 961
BmsI GCATC 2 cut(s) 456, 1390
BmuI ACTGGG 1 cut(s) 961
BplI GAGNNNNNCTC 4 cut(s) 167, 199, 864, 896
BpmI CTGGAG 1 cut(s) 115
Bpu1102I GCTNAGC 1 cut(s) 1072
BpuEI CTTGAG 4 cut(s) 999, 1292, 1379, 1407
BsaAI YACGTR 1 cut(s) 1370
BsaBI GATNNNNATC 1 cut(s) 504
BsaJI CCNNGG 3 cut(s) 592, 801, 1001
BsaWI WCCGGW 1 cut(s) 172
BsaXI ACNNNNNCTCC 3 cut(s) 26, 878, 908
Bsc4I CCNNNNNNNGG 4 cut(s) 140, 403, 1214, 1501
Bse118I RCCGGY 1 cut(s) 407
Bse1I ACTGG 3 cut(s) 98, 967, 1495
Bse8I GATNNNNATC 1 cut(s) 504
BseBI CCWGG 3 cut(s) 168, 321, 593
BseDI CCNNGG 3 cut(s) 592, 801, 1001
BseGI GGATG 6 cut(s) 36, 447, 547, 1194, 1405, 1482
BseJI GATNNNNATC 1 cut(s) 504
BseLI CCNNNNNNNGG 4 cut(s) 140, 403, 1214, 1501
BseMII CTCAG 1 cut(s) 1086
BseNI ACTGG 3 cut(s) 98, 967, 1495
BseRI GAGGAG 3 cut(s) 804, 1230, 1233
BseX3I CGGCCG 1 cut(s) 405
BseXI GCAGC 1 cut(s) 432
Bsh1236I CGCG 2 cut(s) 922, 1293
Bsh1285I CGRYCG 1 cut(s) 408
BshFI GGCC 4 cut(s) 407, 591, 1000, 1610
BsiEI CGRYCG 1 cut(s) 408
BsiHKAI GWGCWC 1 cut(s) 1255
BsiSI CCGG 2 cut(s) 173, 408
BslFI GGGAC 2 cut(s) 313, 440
BslI CCNNNNNNNGG 4 cut(s) 140, 403, 1214, 1501
BsmAI GTCTC 1 cut(s) 1501
BsmFI GGGAC 2 cut(s) 313, 440
BsmI GAATGC 1 cut(s) 1594
BsnI GGCC 4 cut(s) 407, 591, 1000, 1610
Bsp1286I GDGCHC 1 cut(s) 1255
Bsp1407I TGTACA 1 cut(s) 750
Bsp1720I GCTNAGC 1 cut(s) 1072
Bsp19I CCATGG 1 cut(s) 801
BspACI CCGC 6 cut(s) 404, 471, 1076, 1142, 1154, 1291
BspANI GGCC 4 cut(s) 407, 591, 1000, 1610
BspCNI CTCAG 1 cut(s) 1085
BspFNI CGCG 2 cut(s) 922, 1293
BspLI GGNNCC 4 cut(s) 730, 999, 1192, 1493
BspPI GGATC 5 cut(s) 227, 862, 926, 1164, 1355
BspTI CTTAAG 1 cut(s) 707
BsrFI RCCGGY 1 cut(s) 407
BsrGI TGTACA 1 cut(s) 750
BsrI ACTGG 3 cut(s) 98, 967, 1495
BssAI RCCGGY 1 cut(s) 407
BssECI CCNNGG 3 cut(s) 592, 801, 1001
BssT1I CCWWGG 2 cut(s) 801, 1001
Bst2UI CCWGG 3 cut(s) 168, 321, 593
Bst4CI ACNGT 4 cut(s) 561, 607, 622, 739
Bst6I CTCTTC 1 cut(s) 1207
BstAFI CTTAAG 1 cut(s) 707
BstAUI TGTACA 1 cut(s) 750
BstBAI YACGTR 1 cut(s) 1370
BstC8I GCNNGC 2 cut(s) 1152, 1375
BstDEI CTNAG 4 cut(s) 1072, 1487, 1516, 1641
BstDSI CCRYGG 1 cut(s) 801
BstEII GGTNACC 1 cut(s) 796
BstF5I GGATG 6 cut(s) 36, 447, 547, 1194, 1405, 1482
BstFNI CGCG 2 cut(s) 922, 1293
BstHHI GCGC 1 cut(s) 922
BstMAI GTCTC 1 cut(s) 1501
BstMCI CGRYCG 1 cut(s) 408
BstMWI GCNNNNNNNGC 1 cut(s) 444
BstNI CCWGG 3 cut(s) 168, 321, 593
BstNSI RCATGY 1 cut(s) 1627
BstPI GGTNACC 1 cut(s) 796
BstSCI CCNGG 3 cut(s) 166, 319, 591
BstUI CGCG 2 cut(s) 922, 1293
BstV1I GCAGC 1 cut(s) 432
BstXI CCANNNNNNTGG 2 cut(s) 1322, 1440
BstZI CGGCCG 1 cut(s) 405
BsuI GTATCC 2 cut(s) 1129, 1319
BsuRI GGCC 4 cut(s) 407, 591, 1000, 1610
BtgI CCRYGG 1 cut(s) 801
BtsCI GGATG 6 cut(s) 36, 447, 547, 1194, 1405, 1482
BtsI GCAGTG 2 cut(s) 915, 1248
BtsIMutI CAGTG 2 cut(s) 915, 1248
Cac8I GCNNGC 2 cut(s) 1152, 1375
CfoI GCGC 1 cut(s) 922
Cfr10I RCCGGY 1 cut(s) 407
Cfr13I GGNCC 6 cut(s) 170, 739, 805, 978, 998, 1608
CseI GACGC 2 cut(s) 558, 981
Csp6I GTAC 3 cut(s) 603, 640, 751
CviAII CATG 4 cut(s) 748, 770, 802, 1624
CviQI GTAC 3 cut(s) 603, 640, 751
DdeI CTNAG 4 cut(s) 1072, 1487, 1516, 1641
DraI TTTAAA 1 cut(s) 1183
DrdI GACNNNNNNGTC 2 cut(s) 203, 347
DriI GACNNNNNGTC 1 cut(s) 306
DseDI GACNNNNNNGTC 2 cut(s) 203, 347
EaeI YGGCCR 2 cut(s) 405, 589
EagI CGGCCG 1 cut(s) 405
Eam1104I CTCTTC 1 cut(s) 1207
Eam1105I GACNNNNNGTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 1207
EclXI CGGCCG 1 cut(s) 405
Eco130I CCWWGG 2 cut(s) 801, 1001
Eco47I GGWCC 4 cut(s) 170, 739, 805, 978
Eco52I CGGCCG 1 cut(s) 405
Eco57I CTGAAG 2 cut(s) 93, 1166
Eco72I CACGTG 1 cut(s) 1370
Eco91I GGTNACC 1 cut(s) 796
EcoO65I GGTNACC 1 cut(s) 796
EcoRII CCWGG 3 cut(s) 166, 319, 591
EcoT14I CCWWGG 2 cut(s) 801, 1001
ErhI CCWWGG 2 cut(s) 801, 1001
FaeI CATG 4 cut(s) 751, 773, 805, 1627
FalI AAGNNNNNCTT 2 cut(s) 66, 98
FaqI GGGAC 2 cut(s) 313, 440
FatI CATG 4 cut(s) 747, 769, 801, 1623
FauI CCCGC 1 cut(s) 478
FauNDI CATATG 1 cut(s) 264
FbaI TGATCA 1 cut(s) 582
FblI GTMKAC 1 cut(s) 624
Fnu4HI GCNGC 3 cut(s) 405, 421, 1077
FokI GGATG 6 cut(s) 43, 434, 554, 1181, 1412, 1489
Fsp4HI GCNGC 3 cut(s) 405, 421, 1077
FspBI CTAG 3 cut(s) 122, 1050, 1232
GlaI GCGC 1 cut(s) 921
GluI GCNGC 3 cut(s) 405, 421, 1077
GsuI CTGGAG 1 cut(s) 115
HaeIII GGCC 4 cut(s) 407, 591, 1000, 1610
HapII CCGG 2 cut(s) 173, 408
HgaI GACGC 2 cut(s) 558, 981
HhaI GCGC 1 cut(s) 922
Hin1II CATG 4 cut(s) 751, 773, 805, 1627
Hin6I GCGC 1 cut(s) 920
HinP1I GCGC 1 cut(s) 920
HincII GTYRAC 2 cut(s) 625, 1523
HindII GTYRAC 2 cut(s) 625, 1523
HindIII AAGCTT 1 cut(s) 1148
HinfI GANTC 4 cut(s) 144, 178, 645, 1483
HpaII CCGG 2 cut(s) 173, 408
HphI GGTGA 4 cut(s) 181, 475, 610, 790
Hpy166II GTNNAC 4 cut(s) 496, 625, 753, 1523
Hpy188I TCNGA 3 cut(s) 650, 872, 1135
Hpy188III TCNNGA 4 cut(s) 122, 227, 935, 1271
Hpy8I GTNNAC 4 cut(s) 496, 625, 753, 1523
Hpy99I CGWCG 6 cut(s) 49, 233, 513, 626, 927, 997
HpyAV CCTTC 6 cut(s) 132, 393, 496, 719, 1140, 1544
HpyCH4III ACNGT 4 cut(s) 561, 607, 622, 739
HpyCH4IV ACGT 3 cut(s) 511, 638, 1369
HpyCH4V TGCA 1 cut(s) 262
HpyF10VI GCNNNNNNNGC 1 cut(s) 444
HpyF3I CTNAG 4 cut(s) 1072, 1487, 1516, 1641
HpySE526I ACGT 3 cut(s) 511, 638, 1369
Hsp92II CATG 4 cut(s) 751, 773, 805, 1627
HspAI GCGC 1 cut(s) 920
Ksp22I TGATCA 1 cut(s) 582
LmnI GCTCC 3 cut(s) 1250, 1418, 1491
Lsp1109I GCAGC 1 cut(s) 432
LweI GCATC 2 cut(s) 456, 1390
MaeI CTAG 3 cut(s) 122, 1050, 1232
MaeII ACGT 3 cut(s) 511, 638, 1369
MaeIII GTNAC 7 cut(s) 100, 368, 512, 555, 796, 1310, 1365
MboII GAAGA 6 cut(s) 86, 488, 541, 1054, 1224, 1309
MhlI GDGCHC 1 cut(s) 1255
MlsI TGGCCA 1 cut(s) 591
MluCI AATT 8 cut(s) 161, 199, 274, 304, 328, 534, 682, 1526
MluNI TGGCCA 1 cut(s) 591
MmeI TCCRAC 3 cut(s) 915, 1168, 1638
Mox20I TGGCCA 1 cut(s) 591
MscI TGGCCA 1 cut(s) 591
MseI TTAA 6 cut(s) 14, 66, 563, 708, 1058, 1182
MslI CAYNNNNRTG 3 cut(s) 1241, 1260, 1320
Msp20I TGGCCA 1 cut(s) 591
MspA1I CMGCKG 3 cut(s) 1076, 1144, 1448
MspCI CTTAAG 1 cut(s) 707
MspI CCGG 2 cut(s) 173, 408
MspR9I CCNGG 3 cut(s) 168, 321, 593
Mva1269I GAATGC 1 cut(s) 1594
MvaI CCWGG 3 cut(s) 168, 321, 593
MvnI CGCG 2 cut(s) 922, 1293
MwoI GCNNNNNNNGC 1 cut(s) 444
NcoI CCATGG 1 cut(s) 801
NdeI CATATG 1 cut(s) 264
NlaIII CATG 4 cut(s) 751, 773, 805, 1627
NlaIV GGNNCC 4 cut(s) 730, 999, 1192, 1493
NmeAIII GCCGAG 1 cut(s) 1233
NmuCI GTSAC 3 cut(s) 100, 796, 1365
NspI RCATGY 1 cut(s) 1627
OliI CACNNNNGTG 1 cut(s) 1241
PciI ACATGT 1 cut(s) 1623
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PctI GAATGC 1 cut(s) 1594
PfeI GAWTC 4 cut(s) 144, 178, 645, 1483
PfoI TCCNGGA 1 cut(s) 166
PkrI GCNGC 3 cut(s) 406, 422, 1078
PmaCI CACGTG 1 cut(s) 1370
PmlI CACGTG 1 cut(s) 1370
Ppu21I YACGTR 1 cut(s) 1370
PscI ACATGT 1 cut(s) 1623
Psp6I CCWGG 3 cut(s) 166, 319, 591
PspCI CACGTG 1 cut(s) 1370
PspEI GGTNACC 1 cut(s) 796
PspGI CCWGG 3 cut(s) 166, 319, 591
PspN4I GGNNCC 4 cut(s) 730, 999, 1192, 1493
PspPI GGNCC 6 cut(s) 170, 739, 805, 978, 998, 1608
PvuII CAGCTG 1 cut(s) 1448
RsaI GTAC 3 cut(s) 604, 641, 752
RsaNI GTAC 3 cut(s) 603, 640, 751
RseI CAYNNNNRTG 3 cut(s) 1241, 1260, 1320
SalI GTCGAC 1 cut(s) 623
SaqAI TTAA 6 cut(s) 14, 66, 563, 708, 1058, 1182
SatI GCNGC 3 cut(s) 405, 421, 1077
Sau96I GGNCC 6 cut(s) 170, 739, 805, 978, 998, 1608
ScaI AGTACT 1 cut(s) 604
ScrFI CCNGG 3 cut(s) 168, 321, 593
SduI GDGCHC 1 cut(s) 1255
SfaNI GCATC 2 cut(s) 456, 1390
SinI GGWCC 4 cut(s) 170, 739, 805, 978
SmiMI CAYNNNNRTG 3 cut(s) 1241, 1260, 1320
SmlI CTYRAG 5 cut(s) 707, 1014, 1271, 1394, 1422
SmoI CTYRAG 5 cut(s) 707, 1014, 1271, 1394, 1422
Sse9I AATT 8 cut(s) 161, 199, 274, 304, 328, 534, 682, 1526
SsiI CCGC 6 cut(s) 404, 471, 1076, 1142, 1154, 1291
SspI AATATT 2 cut(s) 693, 1062
SspMI CTAG 3 cut(s) 122, 1050, 1232
StyD4I CCNGG 3 cut(s) 166, 319, 591
StyI CCWWGG 2 cut(s) 801, 1001
TaaI ACNGT 4 cut(s) 561, 607, 622, 739
TaiI ACGT 3 cut(s) 514, 641, 1372
TaqI TCGA 8 cut(s) 136, 228, 508, 624, 723, 762, 1320, 1537
TasI AATT 8 cut(s) 161, 199, 274, 304, 328, 534, 682, 1526
TatI WGTACW 2 cut(s) 602, 750
TauI GCSGC 2 cut(s) 407, 1079
TfiI GAWTC 4 cut(s) 144, 178, 645, 1483
Tru1I TTAA 6 cut(s) 14, 66, 563, 708, 1058, 1182
Tru9I TTAA 6 cut(s) 14, 66, 563, 708, 1058, 1182
TscAI CASTG 2 cut(s) 922, 1248
TseFI GTSAC 3 cut(s) 100, 796, 1365
TseI GCWGC 1 cut(s) 420
Tsp45I GTSAC 3 cut(s) 100, 796, 1365
TspDTI ATGAA 4 cut(s) 758, 1055, 1532, 1584
TspGWI ACGGA 3 cut(s) 33, 171, 416
TspRI CASTG 2 cut(s) 922, 1248
Vha464I CTTAAG 1 cut(s) 707
VpaK11BI GGWCC 4 cut(s) 170, 739, 805, 978
XapI RAATTY 3 cut(s) 274, 534, 682
XbaI TCTAGA 1 cut(s) 121
XceI RCATGY 1 cut(s) 1627
XcmI CCANNNNNNNNNTGG 1 cut(s) 199
XmiI GTMKAC 1 cut(s) 624
XspI CTAG 3 cut(s) 122, 1050, 1232
ZrmI AGTACT 1 cut(s) 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.