Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009783

Physical Location & Seq

Genomic Coordinates Forward (+)

17414503 .. 17415428

Gene Structure 926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0125300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGAAGCCACTATTCCAGAAAATCAGCAGCCTCTTTAATTGTCCTCCTTCTGGCAGCGACCAAGATGTAGAAGCCCTACCAGACACAGCTCAAGTTTTCTCTATAAGACCCAAGTGTGTAAAAATAAAGCCGTTATTCCAGAAAATAAGCTGCCTTTTTAATGGTCCTCCTCCTGGTGACCAAGATACAGAAGCTCAACCAGACACAGCAGATGCTCCTAGGTACCGCAACTTGGATTGGGCAAAGATATTTGTTGTCTTCTGCTTGGCATCAGCCATTGCTATAGCTCTGCTATCAGCTCAAGTCTACTCTCAGCTCCCTCTAACCTTCTACTTCCTCTCATTCACCCTCATTTTCTCCTTTACCTGTTTCTTCATTGCTAAATTCATTCACTTGACCCGTCCCCAACCGGCTCAAGTACTAGACCGATTTGGCATTTTCTTTGGCGTGACAGCATTTTTCATTTCCATTACAATTCCGTTTCCTTTGTGGTTCAAATGTACCACCGGTCTCATCTATCTGCTCTCCTGGCTTGCAATTCTAGTTTGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

184

Amino Acids

20.72

Weight (kDa)

8.7

Isoelectric Point (pI)

28.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28090 AT4G38420 AT4G38420 AT4G38420
fragaria_vesca	FvH4_2g16000
malus_domestica	MD05G1128800.v1.1 MD10G1132000.v1.1
prunus_persica	Prupe.8G172900_v2.0.a1
pyrus_communis	pycom05g12480 pycom10g11310
rosa_chinensis	RchiOBHm_Chr6g0279531
rosa_laevigata	RLG00000013138
rosa_multiflora	Rmu_co8258861.1_g000001 Rmu_sc0004644.1_g000011 Rmu_sc0004649.1_g000018 Rmu_sc0040022.1_g000001
rosa_roxburghii	Rroxscaffold_7G00188830
rosa_rugosa	Rorug06G0125300
rosa_samantha	Rh6BG238700 Rh6DG232200
rosa_wichuraiana	Rw6G020450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	222
AccB1I	GGYRCC	1 cut(s)	222
AccI	GTMKAC	1 cut(s)	306
AciI	CCGC	1 cut(s)	226
AcsI	RAATTY	1 cut(s)	383
AfaI	GTAC	3 cut(s)	224, 420, 502
AfiI	CCNNNNNNNGG	3 cut(s)	50, 173, 232
AgeI	ACCGGT	1 cut(s)	506
AgsI	TTSAA	1 cut(s)	496
AjnI	CCWGG	2 cut(s)	172, 527
AluBI	AGCT	6 cut(s)	89, 150, 194, 287, 299, 316
AluI	AGCT	6 cut(s)	89, 150, 194, 287, 299, 316
Alw26I	GTCTC	1 cut(s)	515
ApeKI	GCWGC	3 cut(s)	27, 54, 150
ApoI	RAATTY	1 cut(s)	383
AsiGI	ACCGGT	1 cut(s)	506
Asp718I	GGTACC	1 cut(s)	222
AspA2I	CCTAGG	1 cut(s)	218
AspS9I	GGNCC	1 cut(s)	164
AsuHPI	GGTGA	2 cut(s)	188, 337
AvaII	GGWCC	1 cut(s)	164
AvrII	CCTAGG	1 cut(s)	218
BanI	GGYRCC	1 cut(s)	222
BbsI	GAAGAC	1 cut(s)	250
BbvI	GCAGC	3 cut(s)	39, 66, 137
BceAI	ACGGC	1 cut(s)	115
BciT130I	CCWGG	2 cut(s)	174, 529
BcoDI	GTCTC	1 cut(s)	515
BfaI	CTAG	3 cut(s)	219, 422, 542
BfmI	CTRYAG	1 cut(s)	282
BisI	GCNGC	3 cut(s)	28, 55, 151
BlnI	CCTAGG	1 cut(s)	218
BlsI	GCNGC	3 cut(s)	29, 56, 152
BmcAI	AGTACT	1 cut(s)	420
Bme1390I	CCNGG	2 cut(s)	174, 529
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	1 cut(s)	224
BmrFI	CCNGG	2 cut(s)	174, 529
BmsI	GCATC	2 cut(s)	202, 278
BpiI	GAAGAC	1 cut(s)	250
BpuEI	CTTGAG	3 cut(s)	75, 285, 399
BsaI	GGTCTC	1 cut(s)	515
BsaJI	CCNNGG	1 cut(s)	218
BsaWI	WCCGGW	1 cut(s)	506
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 173, 232
Bse118I	RCCGGY	2 cut(s)	409, 506
Bse3DI	GCAATG	2 cut(s)	276, 375
BseBI	CCWGG	2 cut(s)	174, 529
BseDI	CCNNGG	1 cut(s)	218
BseLI	CCNNNNNNNGG	3 cut(s)	50, 173, 232
BseMI	GCAATG	2 cut(s)	276, 375
BseMII	CTCAG	1 cut(s)	326
BseRI	GAGGAG	1 cut(s)	159
BseXI	GCAGC	3 cut(s)	39, 66, 137
BshNI	GGYRCC	1 cut(s)	222
BshTI	ACCGGT	1 cut(s)	506
BsiSI	CCGG	2 cut(s)	410, 507
BslFI	GGGAC	1 cut(s)	387
BslI	CCNNNNNNNGG	3 cut(s)	50, 173, 232
BsmAI	GTCTC	1 cut(s)	515
BsmFI	GGGAC	1 cut(s)	387
Bso31I	GGTCTC	1 cut(s)	515
BspACI	CCGC	1 cut(s)	226
BspCNI	CTCAG	1 cut(s)	325
BspLI	GGNNCC	1 cut(s)	224
BspT107I	GGYRCC	1 cut(s)	222
BspTNI	GGTCTC	1 cut(s)	515
BsrDI	GCAATG	2 cut(s)	276, 375
BsrFI	RCCGGY	2 cut(s)	409, 506
BssAI	RCCGGY	2 cut(s)	409, 506
BssECI	CCNNGG	1 cut(s)	218
BssT1I	CCWWGG	1 cut(s)	218
Bst2UI	CCWGG	2 cut(s)	174, 529
BstC8I	GCNNGC	1 cut(s)	534
BstDEI	CTNAG	1 cut(s)	312
BstEII	GGTNACC	1 cut(s)	176
BstMAI	GTCTC	1 cut(s)	515
BstMWI	GCNNNNNNNGC	1 cut(s)	529
BstNI	CCWGG	2 cut(s)	174, 529
BstPI	GGTNACC	1 cut(s)	176
BstSCI	CCNGG	2 cut(s)	172, 527
BstSFI	CTRYAG	1 cut(s)	282
BstV1I	GCAGC	3 cut(s)	39, 66, 137
BstV2I	GAAGAC	1 cut(s)	250
Cac8I	GCNNGC	1 cut(s)	534
Cfr10I	RCCGGY	2 cut(s)	409, 506
Cfr13I	GGNCC	1 cut(s)	164
Csp6I	GTAC	3 cut(s)	223, 419, 501
CspAI	ACCGGT	1 cut(s)	506
CviQI	GTAC	3 cut(s)	223, 419, 501
DdeI	CTNAG	1 cut(s)	312
Eco130I	CCWWGG	1 cut(s)	218
Eco31I	GGTCTC	1 cut(s)	515
Eco47I	GGWCC	1 cut(s)	164
Eco91I	GGTNACC	1 cut(s)	176
EcoO65I	GGTNACC	1 cut(s)	176
EcoRII	CCWGG	2 cut(s)	172, 527
EcoT14I	CCWWGG	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	218
FaiI	YATR	2 cut(s)	104, 284
FaqI	GGGAC	1 cut(s)	387
FblI	GTMKAC	1 cut(s)	306
Fnu4HI	GCNGC	3 cut(s)	28, 55, 151
Fsp4HI	GCNGC	3 cut(s)	28, 55, 151
FspBI	CTAG	3 cut(s)	219, 422, 542
GluI	GCNGC	3 cut(s)	28, 55, 151
HapII	CCGG	2 cut(s)	410, 507
HpaII	CCGG	2 cut(s)	410, 507
HphI	GGTGA	2 cut(s)	188, 337
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188III	TCNNGA	2 cut(s)	16, 139
Hpy8I	GTNNAC	1 cut(s)	307
HpyAV	CCTTC	2 cut(s)	57, 337
HpyCH4V	TGCA	1 cut(s)	536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	529
HpyF3I	CTNAG	1 cut(s)	312
KpnI	GGTACC	1 cut(s)	226
LmnI	GCTCC	2 cut(s)	220, 321
Lsp1109I	GCAGC	3 cut(s)	39, 66, 137
LweI	GCATC	2 cut(s)	202, 278
MaeI	CTAG	3 cut(s)	219, 422, 542
MaeIII	GTNAC	2 cut(s)	176, 448
MboII	GAAGA	2 cut(s)	250, 364
MluCI	AATT	4 cut(s)	37, 383, 474, 537
MnlI	CCTC	7 cut(s)	41, 54, 177, 180, 330, 347, 359
MseI	TTAA	2 cut(s)	36, 159
MspI	CCGG	2 cut(s)	410, 507
MspR9I	CCNGG	2 cut(s)	174, 529
MvaI	CCWGG	2 cut(s)	174, 529
MwoI	GCNNNNNNNGC	1 cut(s)	529
NlaIV	GGNNCC	1 cut(s)	224
NmuCI	GTSAC	2 cut(s)	176, 448
PinAI	ACCGGT	1 cut(s)	506
PkrI	GCNGC	3 cut(s)	29, 56, 152
Psp6I	CCWGG	2 cut(s)	172, 527
PspEI	GGTNACC	1 cut(s)	176
PspGI	CCWGG	2 cut(s)	172, 527
PspN4I	GGNNCC	1 cut(s)	224
PspPI	GGNCC	1 cut(s)	164
RsaI	GTAC	3 cut(s)	224, 420, 502
RsaNI	GTAC	3 cut(s)	223, 419, 501
SaqAI	TTAA	2 cut(s)	36, 159
SatI	GCNGC	3 cut(s)	28, 55, 151
Sau96I	GGNCC	1 cut(s)	164
ScaI	AGTACT	1 cut(s)	420
ScrFI	CCNGG	2 cut(s)	174, 529
SetI	ASST	9 cut(s)	91, 152, 196, 224, 289, 301, 318, 329, 368
SfaNI	GCATC	2 cut(s)	202, 278
SfcI	CTRYAG	1 cut(s)	282
SinI	GGWCC	1 cut(s)	164
SmlI	CTYRAG	3 cut(s)	90, 300, 414
SmoI	CTYRAG	3 cut(s)	90, 300, 414
Sse9I	AATT	4 cut(s)	37, 383, 474, 537
SsiI	CCGC	1 cut(s)	226
SspMI	CTAG	3 cut(s)	219, 422, 542
StyD4I	CCNGG	2 cut(s)	172, 527
StyI	CCWWGG	1 cut(s)	218
TaqII	GACCGA	1 cut(s)	441
TasI	AATT	4 cut(s)	37, 383, 474, 537
TatI	WGTACW	1 cut(s)	418
Tru1I	TTAA	2 cut(s)	36, 159
Tru9I	TTAA	2 cut(s)	36, 159
TseFI	GTSAC	2 cut(s)	176, 448
TseI	GCWGC	3 cut(s)	27, 54, 150
Tsp45I	GTSAC	2 cut(s)	176, 448
TspDTI	ATGAA	4 cut(s)	17, 364, 376, 451
TspGWI	ACGGA	1 cut(s)	468
VpaK11BI	GGWCC	1 cut(s)	164
XapI	RAATTY	1 cut(s)	383
XmaJI	CCTAGG	1 cut(s)	218
XmiI	GTMKAC	1 cut(s)	306
XspI	CTAG	3 cut(s)	219, 422, 542
ZrmI	AGTACT	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.