Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004644.1

Orthogroup ID

OG0009783

Physical Location & Seq

Genomic Coordinates Reverse (-)

77924 .. 84342

Gene Structure 6419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004644.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

atgccgctaaacttagcgggaggtgccatctcggcactgctatgcctcagtctcaccgccactctgctctccgtggttaccgctgaagatccctaccgtttcttcgaatggaatgtcacttacggcgacatctacccgctaggtgttcgccaaaagggaatacttatcaacggccagttccccggcccggatattcactccgtcaccaatgacaatctcatcatcaatgtcttcaacagcttggacgagccttttctcatctcctggcatcatgtgattctcagcacagctacgccgatgaggcatgtgttgttaacacagatagtctcgtcgatttcgaaccggagatccagactctcggaatctccgtccgtcgtctccgacttcgatttctccgtcagatcaggttcgagtctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

139

Amino Acids

15.26

Weight (kDa)

5.68

Isoelectric Point (pI)

40.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28090 AT4G38420 AT4G38420 AT4G38420
fragaria_vesca	FvH4_2g16000
malus_domestica	MD05G1128800.v1.1 MD10G1132000.v1.1
prunus_persica	Prupe.8G172900_v2.0.a1
pyrus_communis	pycom05g12480 pycom10g11310
rosa_chinensis	RchiOBHm_Chr6g0279531
rosa_laevigata	RLG00000013138
rosa_multiflora	Rmu_co8258861.1_g000001 Rmu_sc0004644.1_g000011 Rmu_sc0004649.1_g000018 Rmu_sc0040022.1_g000001
rosa_roxburghii	Rroxscaffold_7G00188830
rosa_rugosa	Rorug06G0125300
rosa_samantha	Rh6BG238700 Rh6DG232200
rosa_wichuraiana	Rw6G020450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	23
AciI	CCGC	5 cut(s)	5, 17, 57, 81, 137
AclWI	GGATC	2 cut(s)	83, 342
AcoI	YGGCCR	1 cut(s)	172
AcuI	CTGAAG	1 cut(s)	105
AfiI	CCNNNNNNNGG	1 cut(s)	187
AgsI	TTSAA	1 cut(s)	235
AjnI	CCWGG	1 cut(s)	263
AloI	GAACNNNNNNTCC	2 cut(s)	332, 364
AluBI	AGCT	2 cut(s)	240, 290
AluI	AGCT	2 cut(s)	240, 290
Alw26I	GTCTC	3 cut(s)	56, 331, 382
AlwI	GGATC	2 cut(s)	83, 342
AoxI	GGCC	2 cut(s)	172, 184
ArsI	GACNNNNNNTTYG	2 cut(s)	99, 131
AspS9I	GGNCC	1 cut(s)	185
AsuC2I	CCSGG	2 cut(s)	183, 188
AsuHPI	GGTGA	2 cut(s)	46, 196
AsuII	TTCGAA	2 cut(s)	105, 338
BanI	GGYRCC	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	223
BccI	CCATC	1 cut(s)	35
BceAI	ACGGC	2 cut(s)	139, 187
BciT130I	CCWGG	1 cut(s)	265
BcnI	CCSGG	2 cut(s)	183, 188
BcoDI	GTCTC	3 cut(s)	56, 331, 382
BfaI	CTAG	1 cut(s)	140
BglI	GCCNNNNNGGC	2 cut(s)	32, 301
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	3 cut(s)	183, 188, 265
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	1 cut(s)	25
BmrFI	CCNGG	3 cut(s)	183, 188, 265
BmsI	GCATC	1 cut(s)	277
BpiI	GAAGAC	1 cut(s)	223
Bpu14I	TTCGAA	2 cut(s)	105, 338
BpuMI	CCSGG	2 cut(s)	183, 188
BsaJI	CCNNGG	2 cut(s)	72, 181
BsaWI	WCCGGW	1 cut(s)	342
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
Bse1I	ACTGG	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	265
BseDI	CCNNGG	2 cut(s)	72, 181
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseMII	CTCAG	2 cut(s)	61, 295
BseNI	ACTGG	1 cut(s)	175
BshFI	GGCC	2 cut(s)	174, 186
BshNI	GGYRCC	1 cut(s)	23
BsiSI	CCGG	3 cut(s)	183, 188, 343
BslI	CCNNNNNNNGG	1 cut(s)	187
BsmAI	GTCTC	3 cut(s)	56, 331, 382
BsmBI	CGTCTC	1 cut(s)	382
BsnI	GGCC	2 cut(s)	174, 186
Bsp119I	TTCGAA	2 cut(s)	105, 338
Bsp143I	GATC	3 cut(s)	88, 347, 401
BspACI	CCGC	5 cut(s)	5, 17, 57, 81, 137
BspANI	GGCC	2 cut(s)	174, 186
BspCNI	CTCAG	2 cut(s)	60, 294
BspLI	GGNNCC	1 cut(s)	25
BspPI	GGATC	2 cut(s)	83, 342
BspT104I	TTCGAA	2 cut(s)	105, 338
BspT107I	GGYRCC	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	175
BssECI	CCNNGG	2 cut(s)	72, 181
BssMI	GATC	3 cut(s)	88, 347, 401
Bst2UI	CCWGG	1 cut(s)	265
Bst4CI	ACNGT	1 cut(s)	98
BstBI	TTCGAA	2 cut(s)	105, 338
BstDEI	CTNAG	3 cut(s)	13, 47, 281
BstDSI	CCRYGG	1 cut(s)	72
BstEII	GGTNACC	1 cut(s)	76
BstKTI	GATC	3 cut(s)	91, 350, 404
BstMAI	GTCTC	3 cut(s)	56, 331, 382
BstMBI	GATC	3 cut(s)	88, 347, 401
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 32, 301
BstNI	CCWGG	1 cut(s)	265
BstNSI	RCATGY	1 cut(s)	308
BstPI	GGTNACC	1 cut(s)	76
BstSCI	CCNGG	3 cut(s)	181, 186, 263
BstV2I	GAAGAC	1 cut(s)	223
BstX2I	RGATCY	2 cut(s)	88, 347
BstYI	RGATCY	2 cut(s)	88, 347
BsuRI	GGCC	2 cut(s)	174, 186
BtgI	CCRYGG	1 cut(s)	72
BtsI	GCAGTG	1 cut(s)	35
BtsIMutI	CAGTG	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	185
CviAII	CATG	2 cut(s)	272, 305
CviJI	RGCY	5 cut(s)	174, 186, 240, 250, 290
CviKI_1	RGCY	5 cut(s)	174, 186, 240, 250, 290
DdeI	CTNAG	3 cut(s)	13, 47, 281
DpnI	GATC	3 cut(s)	90, 349, 403
DpnII	GATC	3 cut(s)	88, 347, 401
EaeI	YGGCCR	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	105
Eco91I	GGTNACC	1 cut(s)	76
EcoO65I	GGTNACC	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	263
Esp3I	CGTCTC	1 cut(s)	382
FaeI	CATG	2 cut(s)	275, 308
FaiI	YATR	3 cut(s)	43, 273, 306
FatI	CATG	2 cut(s)	271, 304
FauI	CCCGC	2 cut(s)	10, 144
Fnu4HI	GCNGC	1 cut(s)	5
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	1 cut(s)	140
GluI	GCNGC	1 cut(s)	5
HaeIII	GGCC	2 cut(s)	174, 186
HapII	CCGG	3 cut(s)	183, 188, 343
Hin1II	CATG	2 cut(s)	275, 308
HincII	GTYRAC	1 cut(s)	315
HindII	GTYRAC	1 cut(s)	315
HinfI	GANTC	4 cut(s)	277, 354, 362, 412
HpaI	GTTAAC	1 cut(s)	315
HpaII	CCGG	3 cut(s)	183, 188, 343
HphI	GGTGA	2 cut(s)	46, 196
Hpy166II	GTNNAC	1 cut(s)	315
Hpy188I	TCNGA	3 cut(s)	361, 382, 401
Hpy188III	TCNNGA	1 cut(s)	351
Hpy8I	GTNNAC	1 cut(s)	315
Hpy99I	CGWCG	2 cut(s)	334, 377
HpyCH4III	ACNGT	1 cut(s)	98
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 32, 301
HpyF3I	CTNAG	3 cut(s)	13, 47, 281
Hsp92II	CATG	2 cut(s)	275, 308
KspAI	GTTAAC	1 cut(s)	315
Kzo9I	GATC	3 cut(s)	88, 347, 401
LpnPI	CCDG	8 cut(s)	188, 196, 201, 250, 277, 356, 364, 390
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	1 cut(s)	140
MaeIII	GTNAC	3 cut(s)	76, 115, 202
MalI	GATC	3 cut(s)	90, 349, 403
MboI	GATC	3 cut(s)	88, 347, 401
MboII	GAAGA	3 cut(s)	94, 98, 223
MflI	RGATCY	2 cut(s)	88, 347
MlyI	GAGTC	1 cut(s)	348
MmeI	TCCRAC	1 cut(s)	405
MnlI	CCTC	3 cut(s)	14, 56, 294
MseI	TTAA	1 cut(s)	314
MslI	CAYNNNNRTG	1 cut(s)	40
MspA1I	CMGCKG	1 cut(s)	83
MspI	CCGG	3 cut(s)	183, 188, 343
MspR9I	CCNGG	3 cut(s)	183, 188, 265
MvaI	CCWGG	1 cut(s)	265
MwoI	GCNNNNNNNGC	3 cut(s)	23, 32, 301
NciI	CCSGG	2 cut(s)	183, 188
NdeII	GATC	3 cut(s)	88, 347, 401
NlaIII	CATG	2 cut(s)	275, 308
NlaIV	GGNNCC	1 cut(s)	25
NmeAIII	GCCGAG	1 cut(s)	11
NmuCI	GTSAC	2 cut(s)	115, 202
NspI	RCATGY	1 cut(s)	308
NspV	TTCGAA	2 cut(s)	105, 338
PcsI	WCGNNNNNNNCGW	3 cut(s)	335, 365, 393
PfeI	GAWTC	2 cut(s)	277, 362
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	1 cut(s)	348
PpsI	GAGTC	1 cut(s)	348
Psp6I	CCWGG	1 cut(s)	263
PspEI	GGTNACC	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	263
PspN4I	GGNNCC	1 cut(s)	25
PspPI	GGNCC	1 cut(s)	185
PsuI	RGATCY	2 cut(s)	88, 347
RseI	CAYNNNNRTG	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	314
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	3 cut(s)	88, 347, 401
Sau96I	GGNCC	1 cut(s)	185
SchI	GAGTC	1 cut(s)	348
ScrFI	CCNGG	3 cut(s)	183, 188, 265
SetI	ASST	5 cut(s)	25, 145, 242, 292, 409
SfaNI	GCATC	1 cut(s)	277
SfuI	TTCGAA	2 cut(s)	105, 338
SmiMI	CAYNNNNRTG	1 cut(s)	40
SsiI	CCGC	5 cut(s)	5, 17, 57, 81, 137
SspMI	CTAG	1 cut(s)	140
StyD4I	CCNGG	3 cut(s)	181, 186, 263
TaaI	ACNGT	1 cut(s)	98
TaqI	TCGA	5 cut(s)	105, 332, 338, 387, 410
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	2 cut(s)	277, 362
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TscAI	CASTG	1 cut(s)	42
TseFI	GTSAC	2 cut(s)	115, 202
Tsp45I	GTSAC	2 cut(s)	115, 202
TspGWI	ACGGA	5 cut(s)	61, 190, 357, 361, 385
TspRI	CASTG	1 cut(s)	42
XceI	RCATGY	1 cut(s)	308
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.