AT4G31530

NmrA-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0014247
Physical Location & Seq
Forward (+)
15282230 .. 15287390
5161 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G31530.1

Sequence Viewer

Length: 975 bp
ATGGCTACCACCACCAATCTCAGCTTCGCTCCTCCCTCTTACTCCCGTTTTGCCGCTACAAAATCCCAAATCAGAAACCCTCTGTTTACGTCCCCCCTGCCACTCCCATCTTCTTTCTTCCTGGTTAGAAATGAAGCATCTTTATCTTCGTCAATCACGCCAGTCCAAGCTTTTACAGAAGAAGCCGTCGATACTTCGGATTTAGCTTCTTCTTCTTCAAAGCTTGTACTTGTCGTTGGCGGCACTGGTGGTGTAGGTCAACTTGTGGTAGCTTCATTGCTCAAGAGGAATATAAGATCAAGGTTATTACTGCGTGATCTTGACAAAGCTACCAAGTTATTTGGCAAACAAGATGAATATTCCTTGCAGGTAGTTAAAGGGGATACTAGGAATGCAGAGGATCTTGATCCATCCATGTTTGAGGGTGTCACACATGTGATTTGTACCACTGGAACTACAGCTTTTCCTTCTAAGAGGTGGAATGAAGAAAACACTCCTGAGAAAGTAGATTGGGAAGGTGTGAAGAATCTCATTTCAGCATTGCCATCATCGGTGAAGAGAGTTGTTTTGGTTTCATCAGTAGGTGTGACCAAGTCTAATGAGCTACCCTGGAGCATCATGAACCTTTTTGGAGTTCTTAAGTACAAGAAGATGGGGGAAGATTTTCTTCGTGACTCTGGTCTTCCATTCACCATTATCAGACCTGGTAGATTGACTGATGGACCATACACATCTTATGATCTGAATACTTTGCTCAAAGCTACAGCTGGTGAAAGGCGTGCAGTTGTTATTGGTCAAGGGGACAACCTTGTTGGAGAGGTAAGTAGACTTGTAGTGGCTGAAGCTTGTATACAGGCACTTGATATTGAATTCACACAAGGCAAAGCTTACGAGATCAATTCAGTAAAGGGGGATGGTCCAGGAAGTGATCCACAGCAATGGCGAGAGTTGTTTAAAGCTGCAGAATCCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAD_binding_10

Protein Analysis

324

Amino Acids

35.23

Weight (kDa)

7.67

Isoelectric Point (pI)

45.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 73 - 159 8.9e-10 NmrA-like family
Epimerase PF01370 76 - 197 1.1e-07 NAD dependent epimerase/dehydratase family
3Beta_HSD PF01073 77 - 206 3.6e-10 3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_10 PF13460 80 - 288 6.6e-29 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014247)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31530 AT4G31530
fragaria_vesca FvH4_3g28150
malus_domestica MD03G1169200.v1.1
prunus_persica Prupe.4G258400_v2.0.a1 Prupe.4G258400_v2.0.a1
pyrus_communis pycom03g12540
rosa_chinensis RchiOBHm_Chr5g0050831
rosa_laevigata RLG00000034742
rosa_multiflora Rmu_sc0007394.1_g000008
rosa_roxburghii Rroxscaffold_1G00029880
rosa_rugosa Rorug05G0264500.1
rosa_samantha Rh5AG336500 Rh5BG346000 Rh5CG373700 Rh5DG359000
rosa_wichuraiana Rw5G031730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 358
AccI GTMKAC 2 cut(s) 826, 850
AciI CCGC 2 cut(s) 54, 240
AclWI GGATC 3 cut(s) 401, 408, 923
AcsI RAATTY 1 cut(s) 869
AcuI CTGAAG 1 cut(s) 861
AfaI GTAC 3 cut(s) 228, 445, 644
AflII CTTAAG 1 cut(s) 638
AflIII ACRYGT 1 cut(s) 433
AgsI TTSAA 2 cut(s) 219, 869
AjnI CCWGG 4 cut(s) 120, 608, 703, 919
AjuI GAANNNNNNNTTGG 2 cut(s) 8, 40
AleI CACNNNNGTG 1 cut(s) 434
AlwI GGATC 3 cut(s) 401, 408, 923
ApeKI GCWGC 1 cut(s) 959
ApoI RAATTY 1 cut(s) 869
Asp700I GAANNNNTTC 1 cut(s) 663
AspS9I GGNCC 2 cut(s) 722, 917
AsuHPI GGTGA 3 cut(s) 565, 682, 782
AvaII GGWCC 2 cut(s) 722, 917
BarI GAAGNNNNNNTAC 2 cut(s) 834, 866
BbsI GAAGAC 1 cut(s) 674
BbvI GCAGC 1 cut(s) 946
BccI CCATC 6 cut(s) 115, 418, 553, 646, 713, 908
BceAI ACGGC 1 cut(s) 170
BciT130I CCWGG 4 cut(s) 122, 610, 705, 921
BciVI GTATCC 1 cut(s) 376
BfaI CTAG 1 cut(s) 387
BfmI CTRYAG 3 cut(s) 456, 762, 960
BfrI CTTAAG 1 cut(s) 638
BfuAI ACCTGC 1 cut(s) 358
BfuI GTATCC 1 cut(s) 376
BisI GCNGC 3 cut(s) 54, 241, 960
BlsI GCNGC 3 cut(s) 55, 242, 961
Bme1390I CCNGG 4 cut(s) 122, 610, 705, 921
Bme18I GGWCC 2 cut(s) 722, 917
BmgT120I GGNCC 2 cut(s) 722, 917
BmrFI CCNGG 4 cut(s) 122, 610, 705, 921
BmsI GCATC 2 cut(s) 146, 624
BoxI GACNNNNGTC 1 cut(s) 678
BpiI GAAGAC 1 cut(s) 674
BpmI CTGGAG 1 cut(s) 631
BpuEI CTTGAG 1 cut(s) 266
BsaBI GATNNNNATC 1 cut(s) 405
BsaJI CCNNGG 1 cut(s) 608
Bse1I ACTGG 3 cut(s) 161, 250, 454
Bse3DI GCAATG 3 cut(s) 275, 539, 944
Bse8I GATNNNNATC 1 cut(s) 405
BseBI CCWGG 4 cut(s) 122, 610, 705, 921
BseDI CCNNGG 1 cut(s) 608
BseGI GGATG 2 cut(s) 410, 919
BseJI GATNNNNATC 1 cut(s) 405
BseMI GCAATG 3 cut(s) 275, 539, 944
BseMII CTCAG 2 cut(s) 34, 489
BseNI ACTGG 3 cut(s) 161, 250, 454
BseRI GAGGAG 1 cut(s) 21
BseXI GCAGC 1 cut(s) 946
BsgI GTGCAG 1 cut(s) 801
BslFI GGGAC 2 cut(s) 76, 815
BsmFI GGGAC 2 cut(s) 76, 815
BsmI GAATGC 1 cut(s) 397
Bsp143I GATC 7 cut(s) 296, 316, 400, 406, 739, 894, 928
BspACI CCGC 2 cut(s) 54, 240
BspCNI CTCAG 2 cut(s) 33, 490
BspHI TCATGA 1 cut(s) 618
BspMAI CTGCAG 1 cut(s) 964
BspMI ACCTGC 1 cut(s) 358
BspPI GGATC 3 cut(s) 401, 408, 923
BspTI CTTAAG 1 cut(s) 638
BsrDI GCAATG 3 cut(s) 275, 539, 944
BsrI ACTGG 3 cut(s) 161, 250, 454
BssECI CCNNGG 1 cut(s) 608
BssMI GATC 7 cut(s) 296, 316, 400, 406, 739, 894, 928
BssNAI GTATAC 1 cut(s) 851
Bst1107I GTATAC 1 cut(s) 851
Bst2UI CCWGG 4 cut(s) 122, 610, 705, 921
Bst6I CTCTTC 1 cut(s) 551
BstAFI CTTAAG 1 cut(s) 638
BstC8I GCNNGC 1 cut(s) 780
BstDEI CTNAG 3 cut(s) 20, 471, 498
BstF5I GGATG 2 cut(s) 410, 919
BstKTI GATC 7 cut(s) 299, 319, 403, 409, 742, 897, 931
BstMBI GATC 7 cut(s) 296, 316, 400, 406, 739, 894, 928
BstNI CCWGG 4 cut(s) 122, 610, 705, 921
BstNSI RCATGY 1 cut(s) 437
BstPAI GACNNNNGTC 1 cut(s) 678
BstSCI CCNGG 4 cut(s) 120, 608, 703, 919
BstSFI CTRYAG 3 cut(s) 456, 762, 960
BstV1I GCAGC 1 cut(s) 946
BstV2I GAAGAC 1 cut(s) 674
BstX2I RGATCY 1 cut(s) 400
BstXI CCANNNNNNTGG 1 cut(s) 939
BstYI RGATCY 1 cut(s) 400
BstZ17I GTATAC 1 cut(s) 851
BsuI GTATCC 1 cut(s) 376
BtsCI GGATG 2 cut(s) 410, 919
BtsIMutI CAGTG 2 cut(s) 243, 447
BveI ACCTGC 1 cut(s) 358
Cac8I GCNNGC 1 cut(s) 780
CciI TCATGA 1 cut(s) 618
Cfr13I GGNCC 2 cut(s) 722, 917
CsiI ACCWGGT 1 cut(s) 703
Csp6I GTAC 3 cut(s) 227, 444, 643
CviAII CATG 3 cut(s) 415, 434, 619
CviQI GTAC 3 cut(s) 227, 444, 643
DdeI CTNAG 3 cut(s) 20, 471, 498
DpnI GATC 7 cut(s) 298, 318, 402, 408, 741, 896, 930
DpnII GATC 7 cut(s) 296, 316, 400, 406, 739, 894, 928
DraI TTTAAA 1 cut(s) 955
Eam1104I CTCTTC 1 cut(s) 551
EarI CTCTTC 1 cut(s) 551
Eco47I GGWCC 2 cut(s) 722, 917
Eco57I CTGAAG 1 cut(s) 861
EcoRI GAATTC 1 cut(s) 869
EcoRII CCWGG 4 cut(s) 120, 608, 703, 919
FaeI CATG 3 cut(s) 418, 437, 622
FaiI YATR 7 cut(s) 293, 416, 435, 620, 727, 738, 851
FalI AAGNNNNNCTT 2 cut(s) 651, 683
FaqI GGGAC 2 cut(s) 76, 815
FatI CATG 3 cut(s) 414, 433, 618
FblI GTMKAC 2 cut(s) 826, 850
Fnu4HI GCNGC 3 cut(s) 54, 241, 960
FokI GGATG 2 cut(s) 397, 926
Fsp4HI GCNGC 3 cut(s) 54, 241, 960
FspBI CTAG 1 cut(s) 387
GluI GCNGC 3 cut(s) 54, 241, 960
GsuI CTGGAG 1 cut(s) 631
Hin1II CATG 3 cut(s) 418, 437, 622
HincII GTYRAC 1 cut(s) 260
HindII GTYRAC 1 cut(s) 260
HindIII AAGCTT 4 cut(s) 168, 221, 843, 885
HinfI GANTC 3 cut(s) 526, 674, 965
HphI GGTGA 3 cut(s) 565, 682, 782
Hpy166II GTNNAC 4 cut(s) 87, 260, 827, 851
Hpy188I TCNGA 4 cut(s) 74, 199, 701, 744
Hpy188III TCNNGA 6 cut(s) 283, 320, 404, 497, 619, 671
Hpy8I GTNNAC 4 cut(s) 87, 260, 827, 851
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 2 cut(s) 477, 509
HpyCH4IV ACGT 1 cut(s) 89
HpyCH4V TGCA 4 cut(s) 367, 395, 782, 962
HpyF3I CTNAG 3 cut(s) 20, 471, 498
HpySE526I ACGT 1 cut(s) 89
Hsp92II CATG 3 cut(s) 418, 437, 622
Kzo9I GATC 7 cut(s) 296, 316, 400, 406, 739, 894, 928
LmnI GCTCC 2 cut(s) 34, 612
Lsp1109I GCAGC 1 cut(s) 946
LweI GCATC 2 cut(s) 146, 624
MabI ACCWGGT 1 cut(s) 703
MaeI CTAG 1 cut(s) 387
MaeII ACGT 1 cut(s) 89
MaeIII GTNAC 3 cut(s) 427, 586, 671
MalI GATC 7 cut(s) 298, 318, 402, 408, 741, 896, 930
MboI GATC 7 cut(s) 296, 316, 400, 406, 739, 894, 928
MflI RGATCY 1 cut(s) 400
MluCI AATT 2 cut(s) 869, 898
MlyI GAGTC 1 cut(s) 668
MmeI TCCRAC 1 cut(s) 793
MnlI CCTC 8 cut(s) 42, 46, 90, 279, 391, 415, 468, 811
MroXI GAANNNNTTC 1 cut(s) 663
MseI TTAA 3 cut(s) 375, 639, 954
MslI CAYNNNNRTG 2 cut(s) 434, 937
MspA1I CMGCKG 1 cut(s) 767
MspCI CTTAAG 1 cut(s) 638
MspR9I CCNGG 4 cut(s) 122, 610, 705, 921
Mva1269I GAATGC 1 cut(s) 397
MvaI CCWGG 4 cut(s) 122, 610, 705, 921
NdeII GATC 7 cut(s) 296, 316, 400, 406, 739, 894, 928
NlaIII CATG 3 cut(s) 418, 437, 622
NmuCI GTSAC 3 cut(s) 427, 586, 671
NspI RCATGY 1 cut(s) 437
OliI CACNNNNGTG 1 cut(s) 434
PagI TCATGA 1 cut(s) 618
PciI ACATGT 1 cut(s) 433
PctI GAATGC 1 cut(s) 397
PdmI GAANNNNTTC 1 cut(s) 663
PfeI GAWTC 2 cut(s) 526, 965
PflFI GACNNNGTC 1 cut(s) 592
PfoI TCCNGGA 1 cut(s) 919
PkrI GCNGC 3 cut(s) 55, 242, 961
PleI GAGTC 1 cut(s) 668
PpsI GAGTC 1 cut(s) 668
PscI ACATGT 1 cut(s) 433
PshAI GACNNNNGTC 1 cut(s) 678
Psp6I CCWGG 4 cut(s) 120, 608, 703, 919
PspGI CCWGG 4 cut(s) 120, 608, 703, 919
PspPI GGNCC 2 cut(s) 722, 917
PstI CTGCAG 1 cut(s) 964
PsuI RGATCY 1 cut(s) 400
PsyI GACNNNGTC 1 cut(s) 592
PvuII CAGCTG 1 cut(s) 767
RsaI GTAC 3 cut(s) 228, 445, 644
RsaNI GTAC 3 cut(s) 227, 444, 643
RseI CAYNNNNRTG 2 cut(s) 434, 937
SaqAI TTAA 3 cut(s) 375, 639, 954
SatI GCNGC 3 cut(s) 54, 241, 960
Sau3AI GATC 7 cut(s) 296, 316, 400, 406, 739, 894, 928
Sau96I GGNCC 2 cut(s) 722, 917
SchI GAGTC 1 cut(s) 668
ScrFI CCNGG 4 cut(s) 122, 610, 705, 921
SexAI ACCWGGT 1 cut(s) 703
SfaNI GCATC 2 cut(s) 146, 624
SfcI CTRYAG 3 cut(s) 456, 762, 960
SinI GGWCC 2 cut(s) 722, 917
SmiMI CAYNNNNRTG 2 cut(s) 434, 937
SmlI CTYRAG 2 cut(s) 281, 638
SmoI CTYRAG 2 cut(s) 281, 638
Sse9I AATT 2 cut(s) 869, 898
SsiI CCGC 2 cut(s) 54, 240
SspI AATATT 1 cut(s) 359
SspMI CTAG 1 cut(s) 387
StyD4I CCNGG 4 cut(s) 120, 608, 703, 919
TaiI ACGT 1 cut(s) 92
TaqI TCGA 1 cut(s) 189
TasI AATT 2 cut(s) 869, 898
TatI WGTACW 2 cut(s) 226, 642
TauI GCSGC 2 cut(s) 56, 243
TfiI GAWTC 2 cut(s) 526, 965
Tru1I TTAA 3 cut(s) 375, 639, 954
Tru9I TTAA 3 cut(s) 375, 639, 954
TscAI CASTG 2 cut(s) 250, 454
TseFI GTSAC 3 cut(s) 427, 586, 671
TseI GCWGC 1 cut(s) 959
Tsp45I GTSAC 3 cut(s) 427, 586, 671
TspDTI ATGAA 6 cut(s) 147, 264, 369, 498, 564, 635
TspRI CASTG 2 cut(s) 250, 454
Tth111I GACNNNGTC 1 cut(s) 592
Vha464I CTTAAG 1 cut(s) 638
VpaK11BI GGWCC 2 cut(s) 722, 917
XapI RAATTY 1 cut(s) 869
XceI RCATGY 1 cut(s) 437
XmiI GTMKAC 2 cut(s) 826, 850
XmnI GAANNNNTTC 1 cut(s) 663
XspI CTAG 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.