FvH4_3g28150

NAD(P)H-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0014247
Physical Location & Seq
Reverse (-)
21136948 .. 21141923
4976 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g28150.t1

Sequence Viewer

Length: 978 bp
ATGGCTTTCAGACTCTCACTTACTTCCACTCCCCATTTCCAAATCTCTACCCCAAAACGCCCTCGACAACTACCTCTCCCTCTTCTGGGTTTTCAGCTAAAATGTTGCTCCAGTTCCTTTTCGCGCTCAAAAGCGGGAGCAGTTCATGCTGTTCAACAGGAGGAGCAGCAGCTGGTCCAGTCCCCTGCTTCAGACTCCACTTCTGTCCCTTGTTCCTCTTCCAAGCTCGTTCTCGTCATCGGTGGTACCGGCGGCGTTGGTCAGCTGGTAGTGGCTTCATTGCTCGATCGGAATATCAAGTCTCGCCTACTATTGCGTGACACTGAGAAAGCAACTGCATTATTTGGTGAACAAGACCCAGAAACATTGCAGGTAGTCAAAGGGGACACTCGCAACCCAGATGATCTCGATCCATCTATTTTTGAGGGCGTCACACATGTGATTTGCTGCACCGGAACTACTGCTTTTCCTTCAAAGCGTTGGAGTGGGGATAATACACCAGAAAAAGTTGATTGGGAGGGTGTGAGAAATCTGGTATCTGCACTGCCTCGGTCACTGAAGAGAGTTGTTCTTGTATCATCAGTAGGTGTAACCAAGTTCAATGAACTGCCATGGAGCATTATGAACCTTTTCGGTGTCCTTAAGTATAAGAAGATGGGGGAGGATATTCTTCGTAATTCTGGTCTACCATTTACAATAATCAGACCTGGTAGATTGACAGATGGACCTTATACATCATATGATCTTAATACATTGCTCAAAGCTACAGCTGGCCAACGACGTGCAGTCCTAATAGGTCAAGGAGATACACTCGTTGGTGAGGTTAGCAGACTTGTAGTTGCGGAAGCTTGCATACAGGCGCTGGACATAGAATGTACTGAAGGAAAAATATTTGAAGTCAACTCAGTTGAGGGAGAAGGTCCTGGAAGCGATCAGCAGAAGTGGCGGGAACTATTCAAAGCTGCCCAAGGTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAD_binding_10

Protein Analysis

326

Amino Acids

35.31

Weight (kDa)

8.43

Isoelectric Point (pI)

46.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 74 - 152 5.6e-09 NmrA-like family
Epimerase PF01370 77 - 197 3e-08 NAD dependent epimerase/dehydratase family
3Beta_HSD PF01073 78 - 202 8.7e-07 3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_10 PF13460 81 - 289 2.6e-29 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014247)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31530 AT4G31530
fragaria_vesca FvH4_3g28150
malus_domestica MD03G1169200.v1.1
prunus_persica Prupe.4G258400_v2.0.a1 Prupe.4G258400_v2.0.a1
pyrus_communis pycom03g12540
rosa_chinensis RchiOBHm_Chr5g0050831
rosa_laevigata RLG00000034742
rosa_multiflora Rmu_sc0007394.1_g000008
rosa_roxburghii Rroxscaffold_1G00029880
rosa_rugosa Rorug05G0264500.1
rosa_samantha Rh5AG336500 Rh5BG346000 Rh5CG373700 Rh5DG359000
rosa_wichuraiana Rw5G031730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 361
Acc65I GGTACC 1 cut(s) 245
AccB1I GGYRCC 1 cut(s) 245
AccI GTMKAC 1 cut(s) 685
AccII CGCG 1 cut(s) 124
AciI CCGC 4 cut(s) 134, 252, 842, 946
AclWI GGATC 1 cut(s) 404
AcoI YGGCCR 1 cut(s) 772
AcuI CTGAAG 3 cut(s) 174, 578, 900
AcyI GRCGYC 1 cut(s) 429
AfaI GTAC 2 cut(s) 247, 877
AfiI CCNNNNNNNGG 2 cut(s) 85, 86
AflII CTTAAG 1 cut(s) 641
AflIII ACRYGT 1 cut(s) 436
AgsI TTSAA 5 cut(s) 155, 474, 601, 896, 958
AhdI GACNNNNNGTC 1 cut(s) 785
AjiI CACGTC 1 cut(s) 782
AjnI CCWGG 2 cut(s) 706, 922
AleI CACNNNNGTG 1 cut(s) 437
AluBI AGCT 8 cut(s) 97, 172, 226, 265, 764, 770, 848, 962
AluI AGCT 8 cut(s) 97, 172, 226, 265, 764, 770, 848, 962
Alw26I GTCTC 1 cut(s) 306
AlwI GGATC 1 cut(s) 404
AlwNI CAGNNNCTG 2 cut(s) 172, 862
AoxI GGCC 1 cut(s) 772
ApeKI GCWGC 4 cut(s) 166, 169, 447, 962
Asp700I GAANNNNTTC 1 cut(s) 629
Asp718I GGTACC 1 cut(s) 245
AspLEI GCGC 2 cut(s) 126, 862
AspS9I GGNCC 3 cut(s) 175, 725, 920
AsuHPI GGTGA 2 cut(s) 359, 830
AvaII GGWCC 3 cut(s) 175, 725, 920
BaeI ACNNNNGTAYC 2 cut(s) 798, 831
BalI TGGCCA 1 cut(s) 774
BanI GGYRCC 1 cut(s) 245
BarI GAAGNNNNNNTAC 2 cut(s) 837, 869
BbvI GCAGC 4 cut(s) 178, 181, 434, 949
BccI CCATC 3 cut(s) 421, 649, 716
BciT130I CCWGG 2 cut(s) 708, 924
BcoDI GTCTC 1 cut(s) 306
BfmI CTRYAG 1 cut(s) 765
BfoI RGCGCY 1 cut(s) 863
BfrI CTTAAG 1 cut(s) 641
BfuAI ACCTGC 1 cut(s) 361
BisI GCNGC 5 cut(s) 167, 170, 253, 448, 963
BlsI GCNGC 5 cut(s) 168, 171, 254, 449, 964
Bme1390I CCNGG 2 cut(s) 708, 924
Bme18I GGWCC 3 cut(s) 175, 725, 920
BmeRI GACNNNNNGTC 1 cut(s) 785
BmgBI CACGTC 1 cut(s) 782
BmgT120I GGNCC 3 cut(s) 175, 725, 920
BmiI GGNNCC 1 cut(s) 247
BmrFI CCNGG 2 cut(s) 708, 924
BplI GAGNNNNNCTC 2 cut(s) 795, 827
BpmI CTGGAG 1 cut(s) 94
BsaBI GATNNNNATC 1 cut(s) 408
BsaHI GRCGYC 1 cut(s) 429
BsaJI CCNNGG 3 cut(s) 548, 611, 967
BsaWI WCCGGW 1 cut(s) 452
BsaXI ACNNNNNCTCC 4 cut(s) 13, 43, 60, 90
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 86
Bse118I RCCGGY 1 cut(s) 248
Bse1I ACTGG 2 cut(s) 111, 178
Bse3DI GCAATG 3 cut(s) 278, 365, 752
Bse8I GATNNNNATC 1 cut(s) 408
BseBI CCWGG 2 cut(s) 708, 924
BseDI CCNNGG 3 cut(s) 548, 611, 967
BseJI GATNNNNATC 1 cut(s) 408
BseLI CCNNNNNNNGG 2 cut(s) 85, 86
BseMI GCAATG 3 cut(s) 278, 365, 752
BseMII CTCAG 2 cut(s) 315, 918
BseNI ACTGG 2 cut(s) 111, 178
BseRI GAGGAG 1 cut(s) 176
BseXI GCAGC 4 cut(s) 178, 181, 434, 949
BsgI GTGCAG 3 cut(s) 433, 525, 804
Bsh1236I CGCG 1 cut(s) 124
Bsh1285I CGRYCG 1 cut(s) 289
BshFI GGCC 1 cut(s) 774
BshNI GGYRCC 1 cut(s) 245
BsiEI CGRYCG 1 cut(s) 289
BsiSI CCGG 2 cut(s) 249, 453
BslFI GGGAC 3 cut(s) 166, 191, 398
BslI CCNNNNNNNGG 2 cut(s) 85, 86
BsmAI GTCTC 1 cut(s) 306
BsmFI GGGAC 3 cut(s) 166, 191, 398
BsnI GGCC 1 cut(s) 774
Bsp143I GATC 5 cut(s) 286, 403, 409, 742, 931
Bsp19I CCATGG 1 cut(s) 611
BspACI CCGC 4 cut(s) 134, 252, 842, 946
BspANI GGCC 1 cut(s) 774
BspCNI CTCAG 2 cut(s) 316, 917
BspFNI CGCG 1 cut(s) 124
BspLI GGNNCC 1 cut(s) 247
BspMI ACCTGC 1 cut(s) 361
BspPI GGATC 1 cut(s) 404
BspT107I GGYRCC 1 cut(s) 245
BspTI CTTAAG 1 cut(s) 641
BsrDI GCAATG 3 cut(s) 278, 365, 752
BsrFI RCCGGY 1 cut(s) 248
BsrI ACTGG 2 cut(s) 111, 178
BssAI RCCGGY 1 cut(s) 248
BssECI CCNNGG 3 cut(s) 548, 611, 967
BssMI GATC 5 cut(s) 286, 403, 409, 742, 931
BssNI GRCGYC 1 cut(s) 429
BssT1I CCWWGG 2 cut(s) 611, 967
Bst2UI CCWGG 2 cut(s) 708, 924
Bst6I CTCTTC 3 cut(s) 87, 223, 554
BstACI GRCGYC 1 cut(s) 429
BstAFI CTTAAG 1 cut(s) 641
BstAPI GCANNNNNTGC 1 cut(s) 146
BstC8I GCNNGC 2 cut(s) 772, 850
BstDEI CTNAG 2 cut(s) 324, 904
BstDSI CCRYGG 1 cut(s) 611
BstFNI CGCG 1 cut(s) 124
BstH2I RGCGCY 1 cut(s) 863
BstHHI GCGC 2 cut(s) 126, 862
BstKTI GATC 5 cut(s) 289, 406, 412, 745, 934
BstMAI GTCTC 1 cut(s) 306
BstMBI GATC 5 cut(s) 286, 403, 409, 742, 931
BstMCI CGRYCG 1 cut(s) 289
BstMWI GCNNNNNNNGC 2 cut(s) 146, 943
BstNI CCWGG 2 cut(s) 708, 924
BstNSI RCATGY 1 cut(s) 440
BstSCI CCNGG 2 cut(s) 706, 922
BstSFI CTRYAG 1 cut(s) 765
BstUI CGCG 1 cut(s) 124
BstV1I GCAGC 4 cut(s) 178, 181, 434, 949
BsuRI GGCC 1 cut(s) 774
BtgI CCRYGG 1 cut(s) 611
BtrI CACGTC 1 cut(s) 782
BtsI GCAGTG 1 cut(s) 542
BtsIMutI CAGTG 3 cut(s) 321, 542, 554
BveI ACCTGC 1 cut(s) 361
Cac8I GCNNGC 2 cut(s) 772, 850
CaiI CAGNNNCTG 2 cut(s) 172, 862
CfoI GCGC 2 cut(s) 126, 862
Cfr10I RCCGGY 1 cut(s) 248
Cfr13I GGNCC 3 cut(s) 175, 725, 920
CseI GACGC 1 cut(s) 418
CsiI ACCWGGT 1 cut(s) 706
Csp6I GTAC 2 cut(s) 246, 876
CviAII CATG 3 cut(s) 146, 437, 612
CviQI GTAC 2 cut(s) 246, 876
DdeI CTNAG 2 cut(s) 324, 904
DpnI GATC 5 cut(s) 288, 405, 411, 744, 933
DpnII GATC 5 cut(s) 286, 403, 409, 742, 931
DriI GACNNNNNGTC 1 cut(s) 785
EaeI YGGCCR 1 cut(s) 772
Eam1104I CTCTTC 3 cut(s) 87, 223, 554
Eam1105I GACNNNNNGTC 1 cut(s) 785
EarI CTCTTC 3 cut(s) 87, 223, 554
Eco130I CCWWGG 2 cut(s) 611, 967
Eco47I GGWCC 3 cut(s) 175, 725, 920
Eco57I CTGAAG 3 cut(s) 174, 578, 900
EcoO109I RGGNCCY 1 cut(s) 920
EcoRII CCWGG 2 cut(s) 706, 922
EcoT14I CCWWGG 2 cut(s) 611, 967
ErhI CCWWGG 2 cut(s) 611, 967
FaeI CATG 3 cut(s) 149, 440, 615
FaqI GGGAC 3 cut(s) 166, 191, 398
FatI CATG 3 cut(s) 145, 436, 611
FauI CCCGC 2 cut(s) 127, 939
FauNDI CATATG 1 cut(s) 739
FblI GTMKAC 1 cut(s) 685
Fnu4HI GCNGC 5 cut(s) 167, 170, 253, 448, 963
Fsp4HI GCNGC 5 cut(s) 167, 170, 253, 448, 963
GlaI GCGC 2 cut(s) 125, 861
GluI GCNGC 5 cut(s) 167, 170, 253, 448, 963
GsuI CTGGAG 1 cut(s) 94
HaeII RGCGCY 1 cut(s) 863
HaeIII GGCC 1 cut(s) 774
HapII CCGG 2 cut(s) 249, 453
HgaI GACGC 1 cut(s) 418
HhaI GCGC 2 cut(s) 126, 862
Hin1I GRCGYC 1 cut(s) 429
Hin1II CATG 3 cut(s) 149, 440, 615
Hin6I GCGC 2 cut(s) 124, 860
HinP1I GCGC 2 cut(s) 124, 860
HincII GTYRAC 1 cut(s) 901
HindII GTYRAC 1 cut(s) 901
HindIII AAGCTT 1 cut(s) 846
HinfI GANTC 2 cut(s) 12, 194
HpaII CCGG 2 cut(s) 249, 453
HphI GGTGA 2 cut(s) 359, 830
Hpy166II GTNNAC 3 cut(s) 350, 686, 901
Hpy188I TCNGA 4 cut(s) 11, 193, 291, 704
Hpy188III TCNNGA 1 cut(s) 407
Hpy8I GTNNAC 3 cut(s) 350, 686, 901
Hpy99I CGWCG 1 cut(s) 783
HpyAV CCTTC 3 cut(s) 480, 875, 911
HpyCH4IV ACGT 1 cut(s) 781
HpyCH4V TGCA 6 cut(s) 338, 370, 450, 542, 785, 852
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 943
HpyF3I CTNAG 2 cut(s) 324, 904
HpySE526I ACGT 1 cut(s) 781
Hsp92I GRCGYC 1 cut(s) 429
Hsp92II CATG 3 cut(s) 149, 440, 615
HspAI GCGC 2 cut(s) 124, 860
KpnI GGTACC 1 cut(s) 249
Kzo9I GATC 5 cut(s) 286, 403, 409, 742, 931
LmnI GCTCC 4 cut(s) 113, 137, 163, 615
Lsp1109I GCAGC 4 cut(s) 178, 181, 434, 949
MabI ACCWGGT 1 cut(s) 706
MaeII ACGT 1 cut(s) 781
MaeIII GTNAC 4 cut(s) 317, 430, 552, 589
MalI GATC 5 cut(s) 288, 405, 411, 744, 933
MboI GATC 5 cut(s) 286, 403, 409, 742, 931
MboII GAAGA 5 cut(s) 74, 210, 571, 662, 664
MlsI TGGCCA 1 cut(s) 774
MluCI AATT 1 cut(s) 676
MluNI TGGCCA 1 cut(s) 774
MlyI GAGTC 2 cut(s) 6, 188
MmeI TCCRAC 1 cut(s) 461
Mox20I TGGCCA 1 cut(s) 774
MroXI GAANNNNTTC 1 cut(s) 629
MscI TGGCCA 1 cut(s) 774
MseI TTAA 2 cut(s) 642, 747
MslI CAYNNNNRTG 1 cut(s) 437
Msp20I TGGCCA 1 cut(s) 774
MspA1I CMGCKG 3 cut(s) 172, 265, 770
MspCI CTTAAG 1 cut(s) 641
MspI CCGG 2 cut(s) 249, 453
MspR9I CCNGG 2 cut(s) 708, 924
MvaI CCWGG 2 cut(s) 708, 924
MvnI CGCG 1 cut(s) 124
MwoI GCNNNNNNNGC 2 cut(s) 146, 943
NcoI CCATGG 1 cut(s) 611
NdeI CATATG 1 cut(s) 739
NdeII GATC 5 cut(s) 286, 403, 409, 742, 931
NlaIII CATG 3 cut(s) 149, 440, 615
NlaIV GGNNCC 1 cut(s) 247
NmuCI GTSAC 3 cut(s) 317, 430, 552
NspI RCATGY 1 cut(s) 440
OliI CACNNNNGTG 1 cut(s) 437
PciI ACATGT 1 cut(s) 436
PdmI GAANNNNTTC 1 cut(s) 629
PfoI TCCNGGA 1 cut(s) 922
PkrI GCNGC 5 cut(s) 168, 171, 254, 449, 964
Ple19I CGATCG 1 cut(s) 289
PleI GAGTC 2 cut(s) 6, 188
PpsI GAGTC 2 cut(s) 6, 188
PpuMI RGGWCCY 1 cut(s) 920
PscI ACATGT 1 cut(s) 436
Psp5II RGGWCCY 1 cut(s) 920
Psp6I CCWGG 2 cut(s) 706, 922
PspGI CCWGG 2 cut(s) 706, 922
PspN4I GGNNCC 1 cut(s) 247
PspPI GGNCC 3 cut(s) 175, 725, 920
PspPPI RGGWCCY 1 cut(s) 920
PstNI CAGNNNCTG 2 cut(s) 172, 862
PvuI CGATCG 1 cut(s) 289
PvuII CAGCTG 3 cut(s) 172, 265, 770
RsaI GTAC 2 cut(s) 247, 877
RsaNI GTAC 2 cut(s) 246, 876
RseI CAYNNNNRTG 1 cut(s) 437
SaqAI TTAA 2 cut(s) 642, 747
SatI GCNGC 5 cut(s) 167, 170, 253, 448, 963
Sau3AI GATC 5 cut(s) 286, 403, 409, 742, 931
Sau96I GGNCC 3 cut(s) 175, 725, 920
SchI GAGTC 2 cut(s) 6, 188
ScrFI CCNGG 2 cut(s) 708, 924
SexAI ACCWGGT 1 cut(s) 706
SfcI CTRYAG 1 cut(s) 765
SinI GGWCC 3 cut(s) 175, 725, 920
SmiMI CAYNNNNRTG 1 cut(s) 437
SmlI CTYRAG 1 cut(s) 641
SmoI CTYRAG 1 cut(s) 641
Sse9I AATT 1 cut(s) 676
SsiI CCGC 4 cut(s) 134, 252, 842, 946
SspI AATATT 1 cut(s) 891
StyD4I CCNGG 2 cut(s) 706, 922
StyI CCWWGG 2 cut(s) 611, 967
TaiI ACGT 1 cut(s) 784
TaqI TCGA 3 cut(s) 64, 285, 408
TaqII GACCGA 1 cut(s) 540
TasI AATT 1 cut(s) 676
TatI WGTACW 1 cut(s) 875
TauI GCSGC 1 cut(s) 255
Tru1I TTAA 2 cut(s) 642, 747
Tru9I TTAA 2 cut(s) 642, 747
TscAI CASTG 3 cut(s) 328, 549, 561
TseFI GTSAC 3 cut(s) 317, 430, 552
TseI GCWGC 4 cut(s) 166, 169, 447, 962
Tsp45I GTSAC 3 cut(s) 317, 430, 552
TspDTI ATGAA 4 cut(s) 134, 267, 618, 638
TspRI CASTG 3 cut(s) 328, 549, 561
Vha464I CTTAAG 1 cut(s) 641
VpaK11BI GGWCC 3 cut(s) 175, 725, 920
XceI RCATGY 1 cut(s) 440
XmiI GTMKAC 1 cut(s) 685
XmnI GAANNNNTTC 1 cut(s) 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.