AT4G33040

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015048
Physical Location & Seq
Reverse (-)
15940228 .. 15941493
1266 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G33040.1

Sequence Viewer

Length: 435 bp
ATGATGCAAGAATTAGGCTTACAACGTTTCTCAAACGACGTCGTTCGCTTAGACCTCACTCCTCCTTCTCAAACCTCATCTACTTCTCTTTCCATCGACGAAGAGGAATCAACGGAAGCCAAGATCCGACGGCTGATATCGGAGCATCCTGTGATCATCTTCAGTAGATCTTCATGTTGCATGTGCCACGTCATGAAGAGACTCTTAGCAACGATCGGCGTAATCCCCACCGTCATCGAGCTCGATGATCACGAGGTTTCCTCTCTTCCCACGGCTCTACAAGATGAATATTCCGGTGGCGTCTCCGTCGTTGGTCCTCCGCCGGCGGTTTTCATTGGCCGTGAGTGCGTCGGAGGTCTTGAGTCCCTTGTCGCTCTTCACTTAAGTGGTCAACTTGTTCCTAAGCTTGTCCAAGTTGGAGCTCTTTGGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

144

Amino Acids

15.57

Weight (kDa)

4.95

Isoelectric Point (pI)

63.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 51 - 117 2.1e-07 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015048)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33040
fragaria_vesca FvH4_2g31700
malus_domestica MD08G1063800.v1.1 MD15G1057800.v1.1
prunus_persica Prupe.1G410500_v2.0.a1 Prupe.1G410500_v2.0.a1
pyrus_communis pycom08g05250
rosa_chinensis RchiOBHm_Chr6g0311131
rosa_multiflora Rmu_sc0008967.1_g000007
rosa_roxburghii Rroxscaffold_7G00158000
rosa_rugosa Rorug06G0385700
rosa_samantha Rh6AG499700 Rh6BG510400 Rh6CG516100 Rh6DG502600
rosa_wichuraiana Rw6G043530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 42
AciI CCGC 2 cut(s) 320, 326
AclI AACGTT 1 cut(s) 25
AclWI GGATC 1 cut(s) 118
AcoI YGGCCR 1 cut(s) 337
AcuI CTGAAG 1 cut(s) 145
AcyI GRCGYC 2 cut(s) 39, 300
AflII CTTAAG 1 cut(s) 382
AjiI CACGTC 1 cut(s) 190
AleI CACNNNNGTG 1 cut(s) 384
AluBI AGCT 3 cut(s) 241, 406, 422
AluI AGCT 3 cut(s) 241, 406, 422
Alw21I GWGCWC 2 cut(s) 243, 424
Alw26I GTCTC 2 cut(s) 193, 307
AlwI GGATC 1 cut(s) 118
AoxI GGCC 1 cut(s) 337
AspS9I GGNCC 1 cut(s) 314
AvaII GGWCC 1 cut(s) 314
BanII GRGCYC 2 cut(s) 243, 424
BauI CACGAG 1 cut(s) 251
Bbv12I GWGCWC 2 cut(s) 243, 424
BccI CCATC 1 cut(s) 101
BceAI ACGGC 3 cut(s) 146, 288, 324
BclI TGATCA 2 cut(s) 153, 247
BcoDI GTCTC 2 cut(s) 193, 307
BfrI CTTAAG 1 cut(s) 382
BglII AGATCT 1 cut(s) 167
Bme18I GGWCC 1 cut(s) 314
BmgBI CACGTC 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 314
BmsI GCATC 1 cut(s) 154
BplI GAGNNNNNCTC 2 cut(s) 245, 277
Bpu10I CCTNAGC 1 cut(s) 402
BpuEI CTTGAG 1 cut(s) 380
BsaHI GRCGYC 2 cut(s) 39, 300
BsaJI CCNNGG 1 cut(s) 270
BsaWI WCCGGW 1 cut(s) 293
Bse118I RCCGGY 1 cut(s) 322
BseDI CCNNGG 1 cut(s) 270
BseGI GGATG 1 cut(s) 145
BseRI GAGGAG 1 cut(s) 51
Bsh1285I CGRYCG 1 cut(s) 216
BshFI GGCC 1 cut(s) 339
BsiEI CGRYCG 1 cut(s) 216
BsiHKAI GWGCWC 2 cut(s) 243, 424
BsiSI CCGG 2 cut(s) 294, 323
BslFI GGGAC 1 cut(s) 349
BsmAI GTCTC 2 cut(s) 193, 307
BsmBI CGTCTC 1 cut(s) 307
BsmFI GGGAC 1 cut(s) 349
BsnI GGCC 1 cut(s) 339
Bsp1286I GDGCHC 2 cut(s) 243, 424
Bsp143I GATC 5 cut(s) 123, 153, 167, 213, 247
BspACI CCGC 2 cut(s) 320, 326
BspANI GGCC 1 cut(s) 339
BspHI TCATGA 1 cut(s) 192
BspPI GGATC 1 cut(s) 118
BspQI GCTCTTC 1 cut(s) 381
BspTI CTTAAG 1 cut(s) 382
BsrFI RCCGGY 1 cut(s) 322
BssAI RCCGGY 1 cut(s) 322
BssECI CCNNGG 1 cut(s) 270
BssMI GATC 5 cut(s) 123, 153, 167, 213, 247
BssNI GRCGYC 2 cut(s) 39, 300
BssSI CACGAG 1 cut(s) 251
Bst2BI CACGAG 1 cut(s) 251
Bst4CI ACNGT 1 cut(s) 232
Bst6I CTCTTC 4 cut(s) 96, 191, 270, 381
BstACI GRCGYC 2 cut(s) 39, 300
BstAFI CTTAAG 1 cut(s) 382
BstC8I GCNNGC 1 cut(s) 324
BstDEI CTNAG 3 cut(s) 49, 205, 402
BstDSI CCRYGG 1 cut(s) 270
BstF5I GGATG 1 cut(s) 145
BstKTI GATC 5 cut(s) 126, 156, 170, 216, 250
BstMAI GTCTC 2 cut(s) 193, 307
BstMBI GATC 5 cut(s) 123, 153, 167, 213, 247
BstMCI CGRYCG 1 cut(s) 216
BstMWI GCNNNNNNNGC 1 cut(s) 345
BstNSI RCATGY 1 cut(s) 184
BstX2I RGATCY 2 cut(s) 123, 167
BstYI RGATCY 2 cut(s) 123, 167
BsuRI GGCC 1 cut(s) 339
BtgI CCRYGG 1 cut(s) 270
BtrI CACGTC 1 cut(s) 190
BtsCI GGATG 1 cut(s) 145
Cac8I GCNNGC 1 cut(s) 324
CciI TCATGA 1 cut(s) 192
Cfr10I RCCGGY 1 cut(s) 322
Cfr13I GGNCC 1 cut(s) 314
CseI GACGC 2 cut(s) 289, 337
CviAII CATG 3 cut(s) 174, 181, 193
CviJI RGCY 8 cut(s) 18, 119, 133, 241, 275, 339, 406, 422
CviKI_1 RGCY 8 cut(s) 18, 119, 133, 241, 275, 339, 406, 422
DdeI CTNAG 3 cut(s) 49, 205, 402
DpnI GATC 5 cut(s) 125, 155, 169, 215, 249
DpnII GATC 5 cut(s) 123, 153, 167, 213, 247
EaeI YGGCCR 1 cut(s) 337
Eam1104I CTCTTC 4 cut(s) 96, 191, 270, 381
EarI CTCTTC 4 cut(s) 96, 191, 270, 381
EciI GGCGGA 1 cut(s) 309
Ecl136II GAGCTC 2 cut(s) 241, 422
Eco24I GRGCYC 2 cut(s) 243, 424
Eco32I GATATC 1 cut(s) 138
Eco47I GGWCC 1 cut(s) 314
Eco53kI GAGCTC 2 cut(s) 241, 422
Eco57I CTGAAG 1 cut(s) 145
EcoICRI GAGCTC 2 cut(s) 241, 422
EcoRV GATATC 1 cut(s) 138
EcoT38I GRGCYC 2 cut(s) 243, 424
Esp3I CGTCTC 1 cut(s) 307
FaeI CATG 3 cut(s) 177, 184, 196
FaiI YATR 4 cut(s) 175, 182, 194, 433
FalI AAGNNNNNCTT 2 cut(s) 188, 220
FaqI GGGAC 1 cut(s) 349
FatI CATG 3 cut(s) 173, 180, 192
FbaI TGATCA 2 cut(s) 153, 247
FokI GGATG 1 cut(s) 132
FriOI GRGCYC 2 cut(s) 243, 424
HaeIII GGCC 1 cut(s) 339
HapII CCGG 2 cut(s) 294, 323
HgaI GACGC 2 cut(s) 289, 337
Hin1I GRCGYC 2 cut(s) 39, 300
Hin1II CATG 3 cut(s) 177, 184, 196
HincII GTYRAC 1 cut(s) 392
HindII GTYRAC 1 cut(s) 392
HindIII AAGCTT 1 cut(s) 404
HinfI GANTC 3 cut(s) 107, 201, 362
HpaII CCGG 2 cut(s) 294, 323
Hpy166II GTNNAC 1 cut(s) 392
Hpy188I TCNGA 3 cut(s) 128, 142, 353
Hpy188III TCNNGA 3 cut(s) 193, 251, 359
Hpy8I GTNNAC 1 cut(s) 392
Hpy99I CGWCG 6 cut(s) 41, 44, 101, 132, 311, 353
HpyAV CCTTC 1 cut(s) 75
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4IV ACGT 3 cut(s) 25, 39, 189
HpyCH4V TGCA 2 cut(s) 7, 180
HpyF10VI GCNNNNNNNGC 1 cut(s) 345
HpyF3I CTNAG 3 cut(s) 49, 205, 402
HpySE526I ACGT 3 cut(s) 25, 39, 189
Hsp92I GRCGYC 2 cut(s) 39, 300
Hsp92II CATG 3 cut(s) 177, 184, 196
KroI GCCGGC 1 cut(s) 322
KroNI GCCGGC 1 cut(s) 324
Ksp22I TGATCA 2 cut(s) 153, 247
Kzo9I GATC 5 cut(s) 123, 153, 167, 213, 247
LguI GCTCTTC 1 cut(s) 381
LmnI GCTCC 2 cut(s) 142, 419
LpnPI CCDG 3 cut(s) 162, 307, 336
LweI GCATC 1 cut(s) 154
MaeII ACGT 3 cut(s) 25, 39, 189
MalI GATC 5 cut(s) 125, 155, 169, 215, 249
MboI GATC 5 cut(s) 123, 153, 167, 213, 247
MboII GAAGA 6 cut(s) 113, 151, 162, 208, 257, 368
MflI RGATCY 2 cut(s) 123, 167
MhlI GDGCHC 2 cut(s) 243, 424
MluCI AATT 1 cut(s) 11
MlyI GAGTC 2 cut(s) 195, 371
MmeI TCCRAC 3 cut(s) 151, 331, 397
MnlI CCTC 8 cut(s) 65, 72, 85, 97, 247, 271, 327, 347
MreI CGCCGGCG 1 cut(s) 322
MroNI GCCGGC 1 cut(s) 322
MseI TTAA 1 cut(s) 383
MslI CAYNNNNRTG 1 cut(s) 384
MspCI CTTAAG 1 cut(s) 382
MspI CCGG 2 cut(s) 294, 323
MwoI GCNNNNNNNGC 1 cut(s) 345
NaeI GCCGGC 1 cut(s) 324
NdeII GATC 5 cut(s) 123, 153, 167, 213, 247
NgoMIV GCCGGC 1 cut(s) 322
NlaIII CATG 3 cut(s) 177, 184, 196
NspI RCATGY 1 cut(s) 184
OliI CACNNNNGTG 1 cut(s) 384
PagI TCATGA 1 cut(s) 192
PciSI GCTCTTC 1 cut(s) 381
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PdiI GCCGGC 1 cut(s) 324
PfeI GAWTC 1 cut(s) 107
Ple19I CGATCG 1 cut(s) 216
PleI GAGTC 2 cut(s) 195, 370
PpsI GAGTC 2 cut(s) 195, 370
Psp124BI GAGCTC 2 cut(s) 243, 424
Psp1406I AACGTT 1 cut(s) 25
PspPI GGNCC 1 cut(s) 314
PsuI RGATCY 2 cut(s) 123, 167
PvuI CGATCG 1 cut(s) 216
RseI CAYNNNNRTG 1 cut(s) 384
SacI GAGCTC 2 cut(s) 243, 424
SapI GCTCTTC 1 cut(s) 381
SaqAI TTAA 1 cut(s) 383
Sau3AI GATC 5 cut(s) 123, 153, 167, 213, 247
Sau96I GGNCC 1 cut(s) 314
SchI GAGTC 2 cut(s) 195, 371
SduI GDGCHC 2 cut(s) 243, 424
SfaNI GCATC 1 cut(s) 154
SgrAI CRCCGGYG 1 cut(s) 322
SinI GGWCC 1 cut(s) 314
SmiMI CAYNNNNRTG 1 cut(s) 384
SmlI CTYRAG 2 cut(s) 359, 382
SmoI CTYRAG 2 cut(s) 359, 382
Sse9I AATT 1 cut(s) 11
SsiI CCGC 2 cut(s) 320, 326
SspI AATATT 1 cut(s) 290
SstI GAGCTC 2 cut(s) 243, 424
TaaI ACNGT 1 cut(s) 232
TaiI ACGT 3 cut(s) 28, 42, 192
TaqI TCGA 3 cut(s) 96, 237, 243
TasI AATT 1 cut(s) 11
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 1 cut(s) 383
Tru9I TTAA 1 cut(s) 383
TspDTI ATGAA 4 cut(s) 162, 209, 300, 322
TspGWI ACGGA 2 cut(s) 128, 295
Vha464I CTTAAG 1 cut(s) 382
VpaK11BI GGWCC 1 cut(s) 314
XceI RCATGY 1 cut(s) 184
ZraI GACGTC 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.