Rh6BG510400

glutaredoxin-C6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0015048
Physical Location & Seq
Reverse (-)
70625372 .. 70625800
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG510400.1

Sequence Viewer

Length: 429 bp
ATGCAGGGCCTACGTCGTTGCTCCAACGACGTCGTCCACCTCGGCCTCTCCACCTCCCCTCCTACCCCAAACCCTTCCTCCCTCTCCATCGACGTCGCCGAGTCCGCCGAGACCCGCATCCGCCGCCTCATCTCCGAGCACCCCGTCATCATCTTCAGCCGAACTTCCTGCTGCATGTGCCACGTCATGAAGAAGCTCCTCGCTACTATTGGGGTCCACCCTACCGTCATCGAGTTGGACGACGACGAGATCGCCGCTCTCCCTTGTCCCCCTCCCTCCTCCTCCGCCGTCGATGACGACAAGCCCCGGAATAACATCCCGCCCTCCGTCTTCATCGGCGGCACCTGCATCGGCGGCCTCGAATCCCTGGTGGCCCTCCACCTCACTGGCCACCTCGTCCCCAAGCTCGTCGAAGTTGGTGCCCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

142

Amino Acids

15.06

Weight (kDa)

5.8

Isoelectric Point (pI)

55.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 49 - 84 9.7e-07 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015048)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33040
fragaria_vesca FvH4_2g31700
malus_domestica MD08G1063800.v1.1 MD15G1057800.v1.1
prunus_persica Prupe.1G410500_v2.0.a1 Prupe.1G410500_v2.0.a1
pyrus_communis pycom08g05250
rosa_chinensis RchiOBHm_Chr6g0311131
rosa_multiflora Rmu_sc0008967.1_g000007
rosa_roxburghii Rroxscaffold_7G00158000
rosa_rugosa Rorug06G0385700
rosa_samantha Rh6AG499700 Rh6BG510400 Rh6CG516100 Rh6DG502600
rosa_wichuraiana Rw6G043530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 353
AatII GACGTC 2 cut(s) 33, 96
Acc36I ACCTGC 1 cut(s) 353
AccB1I GGYRCC 2 cut(s) 341, 419
AccBSI CCGCTC 1 cut(s) 257
AciI CCGC 9 cut(s) 105, 115, 121, 124, 255, 285, 320, 339, 354
AcoI YGGCCR 1 cut(s) 388
AcuI CTGAAG 1 cut(s) 139
AcyI GRCGYC 2 cut(s) 30, 93
AjiI CACGTC 1 cut(s) 184
AjnI CCWGG 1 cut(s) 366
AluBI AGCT 2 cut(s) 196, 406
AluI AGCT 2 cut(s) 196, 406
Alw21I GWGCWC 1 cut(s) 141
Alw26I GTCTC 1 cut(s) 104
AoxI GGCC 5 cut(s) 7, 43, 355, 372, 388
ApeKI GCWGC 1 cut(s) 171
AspS9I GGNCC 3 cut(s) 7, 214, 373
AsuC2I CCSGG 1 cut(s) 307
AvaII GGWCC 1 cut(s) 214
BaeGI GKGCMC 1 cut(s) 424
BalI TGGCCA 1 cut(s) 390
BanI GGYRCC 2 cut(s) 341, 419
BbsI GAAGAC 1 cut(s) 322
Bbv12I GWGCWC 1 cut(s) 141
BbvI GCAGC 1 cut(s) 158
BccI CCATC 1 cut(s) 95
BceAI ACGGC 1 cut(s) 272
BcgI CGANNNNNNTGC 5 cut(s) 150, 184, 331, 365, 401
BciT130I CCWGG 1 cut(s) 368
BcnI CCSGG 1 cut(s) 307
BcoDI GTCTC 1 cut(s) 104
BfaI CTAG 1 cut(s) 427
BfuAI ACCTGC 1 cut(s) 353
BisI GCNGC 5 cut(s) 124, 172, 255, 340, 355
BlsI GCNGC 5 cut(s) 125, 173, 256, 341, 356
Bme1390I CCNGG 2 cut(s) 307, 368
Bme18I GGWCC 1 cut(s) 214
BmgBI CACGTC 1 cut(s) 184
BmgT120I GGNCC 3 cut(s) 7, 214, 373
BmiI GGNNCC 3 cut(s) 215, 343, 421
BmrFI CCNGG 2 cut(s) 307, 368
BmsI GCATC 2 cut(s) 126, 357
BpiI GAAGAC 1 cut(s) 322
BpuMI CCSGG 1 cut(s) 307
BsaHI GRCGYC 2 cut(s) 30, 93
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 3 cut(s) 40, 305, 366
BsaXI ACNNNNNCTCC 4 cut(s) 43, 62, 73, 92
Bse1I ACTGG 1 cut(s) 391
BseBI CCWGG 1 cut(s) 368
BseDI CCNNGG 3 cut(s) 40, 305, 366
BseGI GGATG 2 cut(s) 117, 315
BseNI ACTGG 1 cut(s) 391
BseRI GAGGAG 3 cut(s) 188, 268, 271
BseSI GKGCMC 1 cut(s) 424
BseXI GCAGC 1 cut(s) 158
BshFI GGCC 5 cut(s) 9, 45, 357, 374, 390
BshNI GGYRCC 2 cut(s) 341, 419
BsiHKAI GWGCWC 1 cut(s) 141
BsiSI CCGG 1 cut(s) 307
BslFI GGGAC 2 cut(s) 252, 383
BsmAI GTCTC 1 cut(s) 104
BsmFI GGGAC 2 cut(s) 252, 383
BsnI GGCC 5 cut(s) 9, 45, 357, 374, 390
Bso31I GGTCTC 1 cut(s) 104
Bsp1286I GDGCHC 2 cut(s) 141, 424
Bsp143I GATC 1 cut(s) 249
BspACI CCGC 9 cut(s) 105, 115, 121, 124, 255, 285, 320, 339, 354
BspANI GGCC 5 cut(s) 9, 45, 357, 374, 390
BspHI TCATGA 1 cut(s) 186
BspLI GGNNCC 3 cut(s) 215, 343, 421
BspMI ACCTGC 1 cut(s) 353
BspT107I GGYRCC 2 cut(s) 341, 419
BspTNI GGTCTC 1 cut(s) 104
BsrBI CCGCTC 1 cut(s) 257
BsrI ACTGG 1 cut(s) 391
BssECI CCNNGG 3 cut(s) 40, 305, 366
BssMI GATC 1 cut(s) 249
BssNI GRCGYC 2 cut(s) 30, 93
Bst2UI CCWGG 1 cut(s) 368
Bst4CI ACNGT 1 cut(s) 226
BstACI GRCGYC 2 cut(s) 30, 93
BstF5I GGATG 2 cut(s) 117, 315
BstKTI GATC 1 cut(s) 252
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 1 cut(s) 249
BstMWI GCNNNNNNNGC 5 cut(s) 104, 123, 177, 345, 354
BstNI CCWGG 1 cut(s) 368
BstNSI RCATGY 1 cut(s) 178
BstSCI CCNGG 2 cut(s) 305, 366
BstSLI GKGCMC 1 cut(s) 424
BstV1I GCAGC 1 cut(s) 158
BstV2I GAAGAC 1 cut(s) 322
BstXI CCANNNNNNTGG 1 cut(s) 386
BsuRI GGCC 5 cut(s) 9, 45, 357, 374, 390
BtrI CACGTC 1 cut(s) 184
BtsCI GGATG 2 cut(s) 117, 315
BtsIMutI CAGTG 1 cut(s) 384
BveI ACCTGC 1 cut(s) 353
CciI TCATGA 1 cut(s) 186
Cfr13I GGNCC 3 cut(s) 7, 214, 373
CviAII CATG 2 cut(s) 175, 187
CviJI RGCY 9 cut(s) 9, 45, 159, 196, 304, 357, 374, 390, 406
CviKI_1 RGCY 9 cut(s) 9, 45, 159, 196, 304, 357, 374, 390, 406
DpnI GATC 1 cut(s) 251
DpnII GATC 1 cut(s) 249
EaeI YGGCCR 1 cut(s) 388
EciI GGCGGA 3 cut(s) 94, 110, 274
Eco31I GGTCTC 1 cut(s) 104
Eco47I GGWCC 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 139
EcoO109I RGGNCCY 1 cut(s) 7
EcoRII CCWGG 1 cut(s) 366
FaeI CATG 2 cut(s) 178, 190
FaiI YATR 2 cut(s) 176, 188
FaqI GGGAC 2 cut(s) 252, 383
FatI CATG 2 cut(s) 174, 186
FauI CCCGC 2 cut(s) 122, 327
Fnu4HI GCNGC 5 cut(s) 124, 172, 255, 340, 355
FokI GGATG 2 cut(s) 104, 302
Fsp4HI GCNGC 5 cut(s) 124, 172, 255, 340, 355
FspBI CTAG 1 cut(s) 427
GluI GCNGC 5 cut(s) 124, 172, 255, 340, 355
HaeIII GGCC 5 cut(s) 9, 45, 357, 374, 390
HapII CCGG 1 cut(s) 307
Hin1I GRCGYC 2 cut(s) 30, 93
Hin1II CATG 2 cut(s) 178, 190
HinfI GANTC 2 cut(s) 101, 362
HpaII CCGG 1 cut(s) 307
Hpy166II GTNNAC 2 cut(s) 37, 217
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 1 cut(s) 187
Hpy8I GTNNAC 2 cut(s) 37, 217
Hpy99I CGWCG 9 cut(s) 18, 32, 35, 95, 98, 245, 248, 293, 413
HpyAV CCTTC 1 cut(s) 84
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4IV ACGT 4 cut(s) 13, 30, 93, 183
HpyCH4V TGCA 3 cut(s) 4, 174, 348
HpyF10VI GCNNNNNNNGC 5 cut(s) 104, 123, 177, 345, 354
HpySE526I ACGT 4 cut(s) 13, 30, 93, 183
Hsp92I GRCGYC 2 cut(s) 30, 93
Hsp92II CATG 2 cut(s) 178, 190
Kzo9I GATC 1 cut(s) 249
LmnI GCTCC 2 cut(s) 26, 201
LpnPI CCDG 6 cut(s) 181, 320, 353, 358, 372, 380
Lsp1109I GCAGC 1 cut(s) 158
LweI GCATC 2 cut(s) 126, 357
MaeI CTAG 1 cut(s) 427
MaeII ACGT 4 cut(s) 13, 30, 93, 183
MalI GATC 1 cut(s) 251
MbiI CCGCTC 1 cut(s) 257
MboI GATC 1 cut(s) 249
MboII GAAGA 3 cut(s) 145, 202, 322
MhlI GDGCHC 2 cut(s) 141, 424
MlsI TGGCCA 1 cut(s) 390
MluNI TGGCCA 1 cut(s) 390
MlyI GAGTC 1 cut(s) 110
MmeI TCCRAC 2 cut(s) 48, 216
Mox20I TGGCCA 1 cut(s) 390
MscI TGGCCA 1 cut(s) 390
Msp20I TGGCCA 1 cut(s) 390
MspI CCGG 1 cut(s) 307
MspR9I CCNGG 2 cut(s) 307, 368
MvaI CCWGG 1 cut(s) 368
MwoI GCNNNNNNNGC 5 cut(s) 104, 123, 177, 345, 354
NciI CCSGG 1 cut(s) 307
NdeII GATC 1 cut(s) 249
NlaIII CATG 2 cut(s) 178, 190
NlaIV GGNNCC 3 cut(s) 215, 343, 421
NmeAIII GCCGAG 3 cut(s) 21, 124, 133
NspI RCATGY 1 cut(s) 178
PagI TCATGA 1 cut(s) 186
PaqCI CACCTGC 1 cut(s) 353
PcsI WCGNNNNNNNCGW 3 cut(s) 96, 237, 357
PfeI GAWTC 1 cut(s) 362
PflFI GACNNNGTC 1 cut(s) 32
PkrI GCNGC 5 cut(s) 125, 173, 256, 341, 356
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 366
PspGI CCWGG 1 cut(s) 366
PspN4I GGNNCC 3 cut(s) 215, 343, 421
PspPI GGNCC 3 cut(s) 7, 214, 373
PsyI GACNNNGTC 1 cut(s) 32
SatI GCNGC 5 cut(s) 124, 172, 255, 340, 355
Sau3AI GATC 1 cut(s) 249
Sau96I GGNCC 3 cut(s) 7, 214, 373
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 2 cut(s) 307, 368
SduI GDGCHC 2 cut(s) 141, 424
SfaNI GCATC 2 cut(s) 126, 357
SinI GGWCC 1 cut(s) 214
SsiI CCGC 9 cut(s) 105, 115, 121, 124, 255, 285, 320, 339, 354
SspMI CTAG 1 cut(s) 427
StyD4I CCNGG 2 cut(s) 305, 366
TaaI ACNGT 1 cut(s) 226
TaiI ACGT 4 cut(s) 16, 33, 96, 186
TaqI TCGA 5 cut(s) 90, 231, 291, 360, 411
TauI GCSGC 4 cut(s) 126, 257, 342, 357
TfiI GAWTC 1 cut(s) 362
TscAI CASTG 1 cut(s) 391
TseI GCWGC 1 cut(s) 171
TspDTI ATGAA 2 cut(s) 203, 322
TspGWI ACGGA 1 cut(s) 316
TspRI CASTG 1 cut(s) 391
Tth111I GACNNNGTC 1 cut(s) 32
VpaK11BI GGWCC 1 cut(s) 214
XceI RCATGY 1 cut(s) 178
XspI CTAG 1 cut(s) 427
ZraI GACGTC 2 cut(s) 31, 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.