FvH4_2g31700

glutaredoxin-C6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015048
Physical Location & Seq
Forward (+)
24254423 .. 24255591
1169 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g31700.t1

Sequence Viewer

Length: 420 bp
ATGCAGGGCCTACGTCGTTGCTCCAACGACGTCGTCCATCTCGGACTCTCCCCCTCCCCTCCTCCACCAAACCCTTCCTCCCTCTCCATCGACGTCGCCGAGTCCGCCGAGACTCGCATCCGCCGCCTCATCTCCGAGCACCCCGTCATCATCTTCAGCCGCACTTCCTGCTGCATGTGTCACGTCATGAAGAAGCTCCTCGCTACAATTGGCGTCCACCCTACCGTCATCGAGTTGGACGACCACGAGATCGCCGCCCTCCCCTCTCCTCCTCCCTCTTCCGACGACGACCATCCCCGGAATAACATCCCTCCCTCCGTCTTCATTGGCGGCTCCTGCGTCGGCGGCCTCGAGTCCCTCGTCGCCCTCCACCTCACTGGCCACCTCGTCCCCAAGCTCCTCGAAGTTGGTGCCCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

140

Amino Acids

14.8

Weight (kDa)

6.02

Isoelectric Point (pI)

69.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 49 - 84 1.4e-06 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015048)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33040
fragaria_vesca FvH4_2g31700
malus_domestica MD08G1063800.v1.1 MD15G1057800.v1.1
prunus_persica Prupe.1G410500_v2.0.a1 Prupe.1G410500_v2.0.a1
pyrus_communis pycom08g05250
rosa_chinensis RchiOBHm_Chr6g0311131
rosa_multiflora Rmu_sc0008967.1_g000007
rosa_roxburghii Rroxscaffold_7G00158000
rosa_rugosa Rorug06G0385700
rosa_samantha Rh6AG499700 Rh6BG510400 Rh6CG516100 Rh6DG502600
rosa_wichuraiana Rw6G043530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 33, 96
AccB1I GGYRCC 1 cut(s) 410
AciI CCGC 7 cut(s) 105, 121, 124, 160, 255, 330, 345
AcoI YGGCCR 1 cut(s) 379
AcuI CTGAAG 1 cut(s) 139
AcyI GRCGYC 3 cut(s) 30, 93, 213
AjiI CACGTC 1 cut(s) 184
AluBI AGCT 2 cut(s) 196, 397
AluI AGCT 2 cut(s) 196, 397
Alw21I GWGCWC 1 cut(s) 141
Alw26I GTCTC 1 cut(s) 104
Ama87I CYCGRG 1 cut(s) 350
AoxI GGCC 3 cut(s) 7, 346, 379
ApeKI GCWGC 1 cut(s) 171
AspS9I GGNCC 1 cut(s) 7
AsuC2I CCSGG 1 cut(s) 298
AvaI CYCGRG 1 cut(s) 350
BaeGI GKGCMC 1 cut(s) 415
BalI TGGCCA 1 cut(s) 381
BanI GGYRCC 1 cut(s) 410
BauI CACGAG 1 cut(s) 245
BbsI GAAGAC 1 cut(s) 313
Bbv12I GWGCWC 1 cut(s) 141
BbvI GCAGC 1 cut(s) 158
BccI CCATC 3 cut(s) 45, 95, 300
BcgI CGANNNNNNTGC 1 cut(s) 392
BcnI CCSGG 1 cut(s) 298
BcoDI GTCTC 1 cut(s) 104
BfaI CTAG 1 cut(s) 418
BisI GCNGC 6 cut(s) 124, 160, 172, 255, 331, 346
BlsI GCNGC 6 cut(s) 125, 161, 173, 256, 332, 347
Bme1390I CCNGG 1 cut(s) 298
BmeT110I CYCGRG 1 cut(s) 350
BmgBI CACGTC 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 7
BmiI GGNNCC 2 cut(s) 334, 412
BmrFI CCNGG 1 cut(s) 298
BmsI GCATC 1 cut(s) 126
BpiI GAAGAC 1 cut(s) 313
BpuMI CCSGG 1 cut(s) 298
BsaHI GRCGYC 3 cut(s) 30, 93, 213
BsaJI CCNNGG 1 cut(s) 296
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bse1I ACTGG 1 cut(s) 382
BseDI CCNNGG 1 cut(s) 296
BseGI GGATG 3 cut(s) 117, 292, 306
BseNI ACTGG 1 cut(s) 382
BseRI GAGGAG 5 cut(s) 51, 188, 258, 261, 389
BseSI GKGCMC 1 cut(s) 415
BseXI GCAGC 1 cut(s) 158
BshFI GGCC 3 cut(s) 9, 348, 381
BshNI GGYRCC 1 cut(s) 410
BsiHKAI GWGCWC 1 cut(s) 141
BsiHKCI CYCGRG 1 cut(s) 350
BsiSI CCGG 1 cut(s) 298
BslFI GGGAC 2 cut(s) 340, 374
BsmAI GTCTC 1 cut(s) 104
BsmFI GGGAC 2 cut(s) 340, 374
BsnI GGCC 3 cut(s) 9, 348, 381
BsoBI CYCGRG 1 cut(s) 350
Bsp1286I GDGCHC 2 cut(s) 141, 415
Bsp143I GATC 1 cut(s) 249
BspACI CCGC 7 cut(s) 105, 121, 124, 160, 255, 330, 345
BspANI GGCC 3 cut(s) 9, 348, 381
BspHI TCATGA 1 cut(s) 186
BspLI GGNNCC 2 cut(s) 334, 412
BspT107I GGYRCC 1 cut(s) 410
BsrI ACTGG 1 cut(s) 382
BssECI CCNNGG 1 cut(s) 296
BssMI GATC 1 cut(s) 249
BssNI GRCGYC 3 cut(s) 30, 93, 213
BssSI CACGAG 1 cut(s) 245
Bst2BI CACGAG 1 cut(s) 245
Bst4CI ACNGT 1 cut(s) 226
Bst6I CTCTTC 1 cut(s) 283
BstACI GRCGYC 3 cut(s) 30, 93, 213
BstAPI GCANNNNNTGC 1 cut(s) 168
BstF5I GGATG 3 cut(s) 117, 292, 306
BstKTI GATC 1 cut(s) 252
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 1 cut(s) 249
BstMWI GCNNNNNNNGC 5 cut(s) 104, 123, 168, 336, 345
BstNSI RCATGY 1 cut(s) 178
BstSCI CCNGG 1 cut(s) 296
BstSLI GKGCMC 1 cut(s) 415
BstV1I GCAGC 1 cut(s) 158
BstV2I GAAGAC 1 cut(s) 313
BstXI CCANNNNNNTGG 1 cut(s) 377
BsuRI GGCC 3 cut(s) 9, 348, 381
BtrI CACGTC 1 cut(s) 184
BtsCI GGATG 3 cut(s) 117, 292, 306
BtsIMutI CAGTG 1 cut(s) 375
CciI TCATGA 1 cut(s) 186
Cfr13I GGNCC 1 cut(s) 7
CseI GACGC 2 cut(s) 202, 328
CviAII CATG 2 cut(s) 175, 187
CviJI RGCY 7 cut(s) 9, 159, 196, 333, 348, 381, 397
CviKI_1 RGCY 7 cut(s) 9, 159, 196, 333, 348, 381, 397
DpnI GATC 1 cut(s) 251
DpnII GATC 1 cut(s) 249
EaeI YGGCCR 1 cut(s) 379
Eam1104I CTCTTC 1 cut(s) 283
EarI CTCTTC 1 cut(s) 283
EciI GGCGGA 2 cut(s) 94, 110
Eco57I CTGAAG 1 cut(s) 139
Eco88I CYCGRG 1 cut(s) 350
EcoO109I RGGNCCY 1 cut(s) 7
FaeI CATG 2 cut(s) 178, 190
FaiI YATR 2 cut(s) 176, 188
FaqI GGGAC 2 cut(s) 340, 374
FatI CATG 2 cut(s) 174, 186
Fnu4HI GCNGC 6 cut(s) 124, 160, 172, 255, 331, 346
FokI GGATG 3 cut(s) 104, 279, 293
Fsp4HI GCNGC 6 cut(s) 124, 160, 172, 255, 331, 346
FspBI CTAG 1 cut(s) 418
GluI GCNGC 6 cut(s) 124, 160, 172, 255, 331, 346
HaeIII GGCC 3 cut(s) 9, 348, 381
HapII CCGG 1 cut(s) 298
HgaI GACGC 2 cut(s) 202, 328
Hin1I GRCGYC 3 cut(s) 30, 93, 213
Hin1II CATG 2 cut(s) 178, 190
HinfI GANTC 4 cut(s) 45, 101, 112, 353
HpaII CCGG 1 cut(s) 298
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 3 cut(s) 44, 136, 283
Hpy188III TCNNGA 1 cut(s) 187
Hpy8I GTNNAC 1 cut(s) 217
Hpy99I CGWCG 9 cut(s) 18, 32, 35, 95, 98, 287, 290, 344, 365
HpyAV CCTTC 1 cut(s) 84
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4IV ACGT 4 cut(s) 13, 30, 93, 183
HpyCH4V TGCA 2 cut(s) 4, 174
HpyF10VI GCNNNNNNNGC 5 cut(s) 104, 123, 168, 336, 345
HpySE526I ACGT 4 cut(s) 13, 30, 93, 183
Hsp92I GRCGYC 3 cut(s) 30, 93, 213
Hsp92II CATG 2 cut(s) 178, 190
Kzo9I GATC 1 cut(s) 249
LmnI GCTCC 4 cut(s) 26, 201, 338, 402
LpnPI CCDG 4 cut(s) 181, 311, 349, 363
Lsp1109I GCAGC 1 cut(s) 158
LweI GCATC 1 cut(s) 126
MaeI CTAG 1 cut(s) 418
MaeII ACGT 4 cut(s) 13, 30, 93, 183
MaeIII GTNAC 1 cut(s) 179
MalI GATC 1 cut(s) 251
MboI GATC 1 cut(s) 249
MboII GAAGA 4 cut(s) 145, 202, 270, 313
MfeI CAATTG 1 cut(s) 207
MhlI GDGCHC 2 cut(s) 141, 415
MlsI TGGCCA 1 cut(s) 381
MluCI AATT 1 cut(s) 207
MluNI TGGCCA 1 cut(s) 381
MlyI GAGTC 4 cut(s) 39, 106, 110, 362
MmeI TCCRAC 3 cut(s) 48, 216, 306
Mox20I TGGCCA 1 cut(s) 381
MscI TGGCCA 1 cut(s) 381
Msp20I TGGCCA 1 cut(s) 381
MspI CCGG 1 cut(s) 298
MspR9I CCNGG 1 cut(s) 298
MunI CAATTG 1 cut(s) 207
MwoI GCNNNNNNNGC 5 cut(s) 104, 123, 168, 336, 345
NciI CCSGG 1 cut(s) 298
NdeII GATC 1 cut(s) 249
NlaIII CATG 2 cut(s) 178, 190
NlaIV GGNNCC 2 cut(s) 334, 412
NmeAIII GCCGAG 2 cut(s) 124, 133
NmuCI GTSAC 1 cut(s) 179
NspI RCATGY 1 cut(s) 178
PaeR7I CTCGAG 1 cut(s) 350
PagI TCATGA 1 cut(s) 186
PcsI WCGNNNNNNNCGW 4 cut(s) 96, 237, 348, 357
PflFI GACNNNGTC 1 cut(s) 32
PkrI GCNGC 6 cut(s) 125, 161, 173, 256, 332, 347
PleI GAGTC 4 cut(s) 39, 106, 109, 361
PpsI GAGTC 4 cut(s) 39, 106, 109, 361
PspN4I GGNNCC 2 cut(s) 334, 412
PspPI GGNCC 1 cut(s) 7
PspXI VCTCGAGB 1 cut(s) 350
PsyI GACNNNGTC 1 cut(s) 32
SatI GCNGC 6 cut(s) 124, 160, 172, 255, 331, 346
Sau3AI GATC 1 cut(s) 249
Sau96I GGNCC 1 cut(s) 7
SchI GAGTC 4 cut(s) 39, 106, 110, 362
ScrFI CCNGG 1 cut(s) 298
SduI GDGCHC 2 cut(s) 141, 415
SetI ASST 8 cut(s) 16, 33, 96, 186, 198, 375, 387, 399
SfaNI GCATC 1 cut(s) 126
Sfr274I CTCGAG 1 cut(s) 350
SlaI CTCGAG 1 cut(s) 350
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
Sse9I AATT 1 cut(s) 207
SsiI CCGC 7 cut(s) 105, 121, 124, 160, 255, 330, 345
SspMI CTAG 1 cut(s) 418
StyD4I CCNGG 1 cut(s) 296
TaaI ACNGT 1 cut(s) 226
TaiI ACGT 4 cut(s) 16, 33, 96, 186
TaqI TCGA 4 cut(s) 90, 231, 351, 402
TasI AATT 1 cut(s) 207
TauI GCSGC 5 cut(s) 126, 162, 257, 333, 348
TscAI CASTG 1 cut(s) 382
TseFI GTSAC 1 cut(s) 179
TseI GCWGC 1 cut(s) 171
Tsp45I GTSAC 1 cut(s) 179
TspDTI ATGAA 2 cut(s) 203, 313
TspGWI ACGGA 1 cut(s) 307
TspRI CASTG 1 cut(s) 382
Tth111I GACNNNGTC 1 cut(s) 32
XceI RCATGY 1 cut(s) 178
XhoI CTCGAG 1 cut(s) 350
XspI CTAG 1 cut(s) 418
ZraI GACGTC 2 cut(s) 31, 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.