MD08G1063800.v1.1

glutaredoxin-C6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0015048
Physical Location & Seq
Reverse (-)
5024605 .. 5025791
1187 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1063800.v1.1.491

Sequence Viewer

Length: 459 bp
ATGCAAGGCCTACGGCGTTGCTCCAACGACGTCGTCCACCTCGGCCTCTCACCCGTCCCGACATCGCCCTCCCCACCCGCTCCCACAAACAAGTCTTCCTCAACTCTCTCCATCGACGTCGCCGAGTCCGCCGAGACCCGCATCCGCCGCCTCATCTCCGAGCACCCGGTCATCATATTCAGCAAAAGCTCCTGCTACATGTGTCACGTCATGAAGAAGCTCCTCGCCGCCATTGGCGTCCACCCCACCGTCATCGAATTGGACAATCACGAGATCGCTGCTCTCCCCTACGACGACCAACAACAACAACAGTCTTGCAATACTCCGCCCGCCGTTTTCATCGGCGGCACTTGTGTCGGCGGCCTCGAGTCCCTCGTCGCCCTCCACCTCAGCGGCCACCTCGTCCCTAAACTCGTCCAAGTCGGTGCCCTCCGCGGATCCTGTTTCCAAGATTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

153

Amino Acids

16.25

Weight (kDa)

6.63

Isoelectric Point (pI)

71.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 57 - 119 2.9e-09 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015048)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33040
fragaria_vesca FvH4_2g31700
malus_domestica MD08G1063800.v1.1 MD15G1057800.v1.1
prunus_persica Prupe.1G410500_v2.0.a1 Prupe.1G410500_v2.0.a1
pyrus_communis pycom08g05250
rosa_chinensis RchiOBHm_Chr6g0311131
rosa_multiflora Rmu_sc0008967.1_g000007
rosa_roxburghii Rroxscaffold_7G00158000
rosa_rugosa Rorug06G0385700
rosa_samantha Rh6AG499700 Rh6BG510400 Rh6CG516100 Rh6DG502600
rosa_wichuraiana Rw6G043530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 33, 120
AccB1I GGYRCC 1 cut(s) 425
AccBSI CCGCTC 1 cut(s) 80
AccII CGCG 1 cut(s) 435
AclWI GGATC 2 cut(s) 432, 445
AcoI YGGCCR 1 cut(s) 394
AcyI GRCGYC 3 cut(s) 30, 117, 237
AflIII ACRYGT 1 cut(s) 198
AjiI CACGTC 1 cut(s) 208
AluBI AGCT 2 cut(s) 189, 220
AluI AGCT 2 cut(s) 189, 220
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 1 cut(s) 128
AlwI GGATC 2 cut(s) 432, 445
Ama87I CYCGRG 1 cut(s) 365
AoxI GGCC 4 cut(s) 7, 43, 361, 394
ApeKI GCWGC 1 cut(s) 278
AsuC2I CCSGG 1 cut(s) 167
AsuHPI GGTGA 1 cut(s) 42
AvaI CYCGRG 1 cut(s) 365
BaeGI GKGCMC 1 cut(s) 430
BamHI GGATCC 1 cut(s) 437
BanI GGYRCC 1 cut(s) 425
BauI CACGAG 1 cut(s) 269
BbsI GAAGAC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 165
BbvCI CCTCAGC 1 cut(s) 389
BbvI GCAGC 1 cut(s) 265
BccI CCATC 1 cut(s) 119
BceAI ACGGC 2 cut(s) 29, 317
BcgI CGANNNNNNTGC 4 cut(s) 260, 294, 337, 371
BcnI CCSGG 1 cut(s) 167
BcoDI GTCTC 1 cut(s) 128
BisI GCNGC 6 cut(s) 148, 228, 279, 346, 361, 394
BlsI GCNGC 6 cut(s) 149, 229, 280, 347, 362, 395
Bme1390I CCNGG 1 cut(s) 167
BmeT110I CYCGRG 1 cut(s) 365
BmgBI CACGTC 1 cut(s) 208
BmiI GGNNCC 2 cut(s) 427, 439
BmrFI CCNGG 1 cut(s) 167
BmsI GCATC 1 cut(s) 150
BpiI GAAGAC 1 cut(s) 87
Bpu10I CCTNAGC 1 cut(s) 389
BpuMI CCSGG 1 cut(s) 167
BsaHI GRCGYC 3 cut(s) 30, 117, 237
BsaI GGTCTC 1 cut(s) 128
BsaJI CCNNGG 2 cut(s) 40, 433
BseDI CCNNGG 2 cut(s) 40, 433
BseGI GGATG 1 cut(s) 141
BseMII CTCAG 1 cut(s) 403
BseRI GAGGAG 1 cut(s) 212
BseSI GKGCMC 1 cut(s) 430
BseXI GCAGC 1 cut(s) 265
Bsh1236I CGCG 1 cut(s) 435
BshFI GGCC 4 cut(s) 9, 45, 363, 396
BshNI GGYRCC 1 cut(s) 425
BsiHKAI GWGCWC 1 cut(s) 165
BsiHKCI CYCGRG 1 cut(s) 365
BsiSI CCGG 1 cut(s) 167
BslFI GGGAC 3 cut(s) 41, 355, 389
BsmAI GTCTC 1 cut(s) 128
BsmFI GGGAC 3 cut(s) 41, 355, 389
BsnI GGCC 4 cut(s) 9, 45, 363, 396
Bso31I GGTCTC 1 cut(s) 128
BsoBI CYCGRG 1 cut(s) 365
Bsp1286I GDGCHC 2 cut(s) 165, 430
Bsp143I GATC 2 cut(s) 273, 437
BspANI GGCC 4 cut(s) 9, 45, 363, 396
BspCNI CTCAG 1 cut(s) 402
BspFNI CGCG 1 cut(s) 435
BspHI TCATGA 1 cut(s) 210
BspLI GGNNCC 2 cut(s) 427, 439
BspPI GGATC 2 cut(s) 432, 445
BspT107I GGYRCC 1 cut(s) 425
BspTNI GGTCTC 1 cut(s) 128
BsrBI CCGCTC 1 cut(s) 80
BssECI CCNNGG 2 cut(s) 40, 433
BssMI GATC 2 cut(s) 273, 437
BssNI GRCGYC 3 cut(s) 30, 117, 237
BssSI CACGAG 1 cut(s) 269
Bst2BI CACGAG 1 cut(s) 269
Bst4CI ACNGT 2 cut(s) 250, 312
BstACI GRCGYC 3 cut(s) 30, 117, 237
BstC8I GCNNGC 1 cut(s) 330
BstDEI CTNAG 1 cut(s) 389
BstDSI CCRYGG 1 cut(s) 433
BstF5I GGATG 1 cut(s) 141
BstFNI CGCG 1 cut(s) 435
BstKTI GATC 2 cut(s) 276, 440
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 2 cut(s) 273, 437
BstMWI GCNNNNNNNGC 2 cut(s) 128, 147
BstNSI RCATGY 1 cut(s) 202
BstSCI CCNGG 1 cut(s) 165
BstSLI GKGCMC 1 cut(s) 430
BstUI CGCG 1 cut(s) 435
BstV1I GCAGC 1 cut(s) 265
BstV2I GAAGAC 1 cut(s) 87
BstX2I RGATCY 1 cut(s) 437
BstYI RGATCY 1 cut(s) 437
BsuRI GGCC 4 cut(s) 9, 45, 363, 396
BtgI CCRYGG 1 cut(s) 433
BtgZI GCGATG 1 cut(s) 48
BtrI CACGTC 1 cut(s) 208
BtsCI GGATG 1 cut(s) 141
Cac8I GCNNGC 1 cut(s) 330
CciI TCATGA 1 cut(s) 210
Cfr42I CCGCGG 1 cut(s) 436
CseI GACGC 1 cut(s) 226
CviAII CATG 2 cut(s) 199, 211
CviJI RGCY 6 cut(s) 9, 45, 189, 220, 363, 396
CviKI_1 RGCY 6 cut(s) 9, 45, 189, 220, 363, 396
DdeI CTNAG 1 cut(s) 389
DpnI GATC 2 cut(s) 275, 439
DpnII GATC 2 cut(s) 273, 437
EaeI YGGCCR 1 cut(s) 394
EciI GGCGGA 3 cut(s) 118, 134, 315
Eco147I AGGCCT 1 cut(s) 9
Eco31I GGTCTC 1 cut(s) 128
Eco88I CYCGRG 1 cut(s) 365
FaeI CATG 2 cut(s) 202, 214
FaiI YATR 4 cut(s) 176, 200, 212, 457
FaqI GGGAC 3 cut(s) 41, 355, 389
FatI CATG 2 cut(s) 198, 210
FauI CCCGC 3 cut(s) 85, 146, 337
Fnu4HI GCNGC 6 cut(s) 148, 228, 279, 346, 361, 394
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 6 cut(s) 148, 228, 279, 346, 361, 394
GluI GCNGC 6 cut(s) 148, 228, 279, 346, 361, 394
HaeIII GGCC 4 cut(s) 9, 45, 363, 396
HapII CCGG 1 cut(s) 167
HgaI GACGC 1 cut(s) 226
Hin1I GRCGYC 3 cut(s) 30, 117, 237
Hin1II CATG 2 cut(s) 202, 214
HinfI GANTC 2 cut(s) 125, 368
HpaII CCGG 1 cut(s) 167
HphI GGTGA 1 cut(s) 42
Hpy166II GTNNAC 2 cut(s) 37, 241
Hpy188I TCNGA 1 cut(s) 160
Hpy188III TCNNGA 3 cut(s) 58, 211, 269
Hpy8I GTNNAC 2 cut(s) 37, 241
Hpy99I CGWCG 6 cut(s) 32, 35, 119, 122, 296, 380
HpyCH4III ACNGT 2 cut(s) 250, 312
HpyCH4IV ACGT 3 cut(s) 30, 117, 207
HpyCH4V TGCA 2 cut(s) 4, 318
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 147
HpyF3I CTNAG 1 cut(s) 389
HpySE526I ACGT 3 cut(s) 30, 117, 207
Hsp92I GRCGYC 3 cut(s) 30, 117, 237
Hsp92II CATG 2 cut(s) 202, 214
KspI CCGCGG 1 cut(s) 436
Kzo9I GATC 2 cut(s) 273, 437
LmnI GCTCC 4 cut(s) 26, 85, 194, 225
LpnPI CCDG 3 cut(s) 180, 205, 454
Lsp1109I GCAGC 1 cut(s) 265
LweI GCATC 1 cut(s) 150
MaeII ACGT 3 cut(s) 30, 117, 207
MaeIII GTNAC 1 cut(s) 203
MalI GATC 2 cut(s) 275, 439
MbiI CCGCTC 1 cut(s) 80
MboI GATC 2 cut(s) 273, 437
MboII GAAGA 2 cut(s) 87, 226
MflI RGATCY 1 cut(s) 437
MhlI GDGCHC 2 cut(s) 165, 430
MluCI AATT 1 cut(s) 257
MlyI GAGTC 2 cut(s) 134, 377
MmeI TCCRAC 1 cut(s) 48
MspA1I CMGCKG 2 cut(s) 393, 435
MspI CCGG 1 cut(s) 167
MspR9I CCNGG 1 cut(s) 167
MvnI CGCG 1 cut(s) 435
MwoI GCNNNNNNNGC 2 cut(s) 128, 147
NciI CCSGG 1 cut(s) 167
NdeII GATC 2 cut(s) 273, 437
NlaIII CATG 2 cut(s) 202, 214
NlaIV GGNNCC 2 cut(s) 427, 439
NmeAIII GCCGAG 3 cut(s) 21, 148, 157
NmuCI GTSAC 1 cut(s) 203
NspI RCATGY 1 cut(s) 202
PaeR7I CTCGAG 1 cut(s) 365
PagI TCATGA 1 cut(s) 210
PceI AGGCCT 1 cut(s) 9
PciI ACATGT 1 cut(s) 198
PcsI WCGNNNNNNNCGW 3 cut(s) 120, 363, 372
PflFI GACNNNGTC 1 cut(s) 32
PkrI GCNGC 6 cut(s) 149, 229, 280, 347, 362, 395
PleI GAGTC 2 cut(s) 133, 376
PpsI GAGTC 2 cut(s) 133, 376
PscI ACATGT 1 cut(s) 198
PspN4I GGNNCC 2 cut(s) 427, 439
PspXI VCTCGAGB 1 cut(s) 365
PsuI RGATCY 1 cut(s) 437
PsyI GACNNNGTC 1 cut(s) 32
SacII CCGCGG 1 cut(s) 436
SatI GCNGC 6 cut(s) 148, 228, 279, 346, 361, 394
Sau3AI GATC 2 cut(s) 273, 437
SchI GAGTC 2 cut(s) 134, 377
ScrFI CCNGG 1 cut(s) 167
SduI GDGCHC 2 cut(s) 165, 430
SetI ASST 8 cut(s) 33, 42, 120, 191, 210, 222, 390, 402
SfaNI GCATC 1 cut(s) 150
Sfr274I CTCGAG 1 cut(s) 365
Sfr303I CCGCGG 1 cut(s) 436
SgrBI CCGCGG 1 cut(s) 436
SlaI CTCGAG 1 cut(s) 365
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
Sse9I AATT 1 cut(s) 257
SseBI AGGCCT 1 cut(s) 9
StuI AGGCCT 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 165
TaaI ACNGT 2 cut(s) 250, 312
TaiI ACGT 3 cut(s) 33, 120, 210
TaqI TCGA 3 cut(s) 114, 255, 366
TasI AATT 1 cut(s) 257
TauI GCSGC 5 cut(s) 150, 230, 348, 363, 396
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 1 cut(s) 278
Tsp45I GTSAC 1 cut(s) 203
TspDTI ATGAA 2 cut(s) 227, 328
Tth111I GACNNNGTC 1 cut(s) 32
XceI RCATGY 1 cut(s) 202
XhoI CTCGAG 1 cut(s) 365
ZraI GACGTC 2 cut(s) 31, 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.