Prupe.1G410500_v2.0.a1

glutaredoxin-C6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015048
Physical Location & Seq
Forward (+)
35881093 .. 35882525
1433 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G410500.2

Sequence Viewer

Length: 537 bp
ATGCAAGGCCTACGGCGTTGCACAAACGACGTCGTCCACCTGGGCCTCTCCCCCTCCCCGACCCCGCCCTCCCCTCCCGGCCCTCCCTCCAACAACCCCTCCTCCCTCTCCATCGACGTGGCTGAGTCCGCCGAGACCCGCATCCGCCGCCTCATCTCCGAGCACCCTGTCATCATCTTCAGCCGCACCTCCTGCTGCATGTGCCACGTCATGAAGAAGCTCCTCGCCACGATTGGGGTCCACCCCACCGTCATCGAATTGGACGATCACGAGATCGCCGCCCTCCCCTCCTCCTCCTCGGACGACAACAACAACGAAGAACAGCAACATCAGCAACAACCTTGTAATACTCCGCCCGCCGTTTTCATTGGTGGCACGTGCGTCGGTGGCCTCGAATCTCTCGTGGCCCTCCACCTCAGCGGCCACCTCGTCCCCAAACTGGTCCAAGTCGGTGTCCTCTGGTGTCGTATACGGGACATGTTTGCTGAATTACGTACATCGATCGCTTCTGATCCACGTCCAACGACTTCGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

179

Amino Acids

19.2

Weight (kDa)

6.03

Isoelectric Point (pI)

63.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015048)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33040
fragaria_vesca FvH4_2g31700
malus_domestica MD08G1063800.v1.1 MD15G1057800.v1.1
prunus_persica Prupe.1G410500_v2.0.a1 Prupe.1G410500_v2.0.a1
pyrus_communis pycom08g05250
rosa_chinensis RchiOBHm_Chr6g0311131
rosa_multiflora Rmu_sc0008967.1_g000007
rosa_roxburghii Rroxscaffold_7G00158000
rosa_rugosa Rorug06G0385700
rosa_samantha Rh6AG499700 Rh6BG510400 Rh6CG516100 Rh6DG502600
rosa_wichuraiana Rw6G043530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 33
AccI GTMKAC 1 cut(s) 469
AclWI GGATC 1 cut(s) 506
AcoI YGGCCR 1 cut(s) 421
AcuI CTGAAG 1 cut(s) 163
AcvI CACGTG 1 cut(s) 378
AcyI GRCGYC 1 cut(s) 30
AfaI GTAC 1 cut(s) 496
AfiI CCNNNNNNNGG 2 cut(s) 234, 439
AflIII ACRYGT 1 cut(s) 477
AjiI CACGTC 3 cut(s) 118, 208, 518
AjnI CCWGG 1 cut(s) 39
AluBI AGCT 1 cut(s) 220
AluI AGCT 1 cut(s) 220
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 1 cut(s) 128
AlwI GGATC 1 cut(s) 506
AoxI GGCC 6 cut(s) 7, 43, 79, 388, 405, 421
ApeKI GCWGC 1 cut(s) 195
AspS9I GGNCC 5 cut(s) 43, 80, 238, 406, 442
AsuC2I CCSGG 1 cut(s) 78
AvaII GGWCC 2 cut(s) 238, 442
BauI CACGAG 2 cut(s) 269, 401
BbrPI CACGTG 1 cut(s) 378
Bbv12I GWGCWC 1 cut(s) 165
BbvCI CCTCAGC 1 cut(s) 416
BbvI GCAGC 1 cut(s) 182
BccI CCATC 1 cut(s) 119
BceAI ACGGC 2 cut(s) 29, 344
BcgI CGANNNNNNTGC 2 cut(s) 364, 398
BciT130I CCWGG 1 cut(s) 41
BcnI CCSGG 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 128
BfaI CTAG 1 cut(s) 535
BisI GCNGC 5 cut(s) 148, 184, 196, 279, 421
BlsI GCNGC 5 cut(s) 149, 185, 197, 280, 422
Bme1390I CCNGG 2 cut(s) 41, 78
Bme18I GGWCC 2 cut(s) 238, 442
BmgBI CACGTC 3 cut(s) 118, 208, 518
BmgT120I GGNCC 5 cut(s) 43, 80, 238, 406, 442
BmiI GGNNCC 1 cut(s) 239
BmrFI CCNGG 2 cut(s) 41, 78
BmsI GCATC 1 cut(s) 150
Bpu10I CCTNAGC 1 cut(s) 416
BpuMI CCSGG 1 cut(s) 78
Bsa29I ATCGAT 1 cut(s) 500
BsaAI YACGTR 2 cut(s) 378, 494
BsaHI GRCGYC 1 cut(s) 30
BsaI GGTCTC 1 cut(s) 128
BsaJI CCNNGG 2 cut(s) 40, 297
BsaXI ACNNNNNCTCC 4 cut(s) 83, 86, 113, 116
Bsc4I CCNNNNNNNGG 2 cut(s) 234, 439
Bse1I ACTGG 1 cut(s) 444
BseBI CCWGG 1 cut(s) 41
BseCI ATCGAT 1 cut(s) 500
BseDI CCNNGG 2 cut(s) 40, 297
BseGI GGATG 1 cut(s) 141
BseLI CCNNNNNNNGG 2 cut(s) 234, 439
BseMII CTCAG 2 cut(s) 114, 430
BseNI ACTGG 1 cut(s) 444
BseRI GAGGAG 5 cut(s) 91, 212, 280, 283, 286
BseXI GCAGC 1 cut(s) 182
Bsh1285I CGRYCG 1 cut(s) 504
BshFI GGCC 6 cut(s) 9, 45, 81, 390, 407, 423
BshVI ATCGAT 1 cut(s) 500
BsiEI CGRYCG 1 cut(s) 504
BsiHKAI GWGCWC 1 cut(s) 165
BsiSI CCGG 1 cut(s) 78
BslFI GGGAC 2 cut(s) 416, 488
BslI CCNNNNNNNGG 2 cut(s) 234, 439
BsmAI GTCTC 1 cut(s) 128
BsmFI GGGAC 2 cut(s) 416, 488
BsnI GGCC 6 cut(s) 9, 45, 81, 390, 407, 423
Bso31I GGTCTC 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 165
Bsp143I GATC 5 cut(s) 265, 273, 501, 511, 531
BspANI GGCC 6 cut(s) 9, 45, 81, 390, 407, 423
BspCNI CTCAG 2 cut(s) 115, 429
BspDI ATCGAT 1 cut(s) 500
BspHI TCATGA 1 cut(s) 210
BspLI GGNNCC 1 cut(s) 239
BspPI GGATC 1 cut(s) 506
BspTNI GGTCTC 1 cut(s) 128
BsrI ACTGG 1 cut(s) 444
BssECI CCNNGG 2 cut(s) 40, 297
BssMI GATC 5 cut(s) 265, 273, 501, 511, 531
BssNAI GTATAC 1 cut(s) 470
BssNI GRCGYC 1 cut(s) 30
BssSI CACGAG 2 cut(s) 269, 401
Bst1107I GTATAC 1 cut(s) 470
Bst2BI CACGAG 2 cut(s) 269, 401
Bst2UI CCWGG 1 cut(s) 41
Bst4CI ACNGT 1 cut(s) 250
BstACI GRCGYC 1 cut(s) 30
BstAPI GCANNNNNTGC 1 cut(s) 192
BstBAI YACGTR 2 cut(s) 378, 494
BstC8I GCNNGC 1 cut(s) 357
BstDEI CTNAG 2 cut(s) 123, 416
BstF5I GGATG 1 cut(s) 141
BstKTI GATC 5 cut(s) 268, 276, 504, 514, 534
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 5 cut(s) 265, 273, 501, 511, 531
BstMCI CGRYCG 1 cut(s) 504
BstMWI GCNNNNNNNGC 6 cut(s) 128, 147, 192, 201, 331, 387
BstNI CCWGG 1 cut(s) 41
BstNSI RCATGY 2 cut(s) 202, 481
BstSCI CCNGG 2 cut(s) 39, 76
BstSNI TACGTA 1 cut(s) 494
BstV1I GCAGC 1 cut(s) 182
BstXI CCANNNNNNTGG 1 cut(s) 118
BstZ17I GTATAC 1 cut(s) 470
Bsu15I ATCGAT 1 cut(s) 500
BsuRI GGCC 6 cut(s) 9, 45, 81, 390, 407, 423
BsuTUI ATCGAT 1 cut(s) 500
BtrI CACGTC 3 cut(s) 118, 208, 518
BtsCI GGATG 1 cut(s) 141
Cac8I GCNNGC 1 cut(s) 357
CciI TCATGA 1 cut(s) 210
Cfr13I GGNCC 5 cut(s) 43, 80, 238, 406, 442
ClaI ATCGAT 1 cut(s) 500
CseI GACGC 1 cut(s) 370
Csp6I GTAC 1 cut(s) 495
CviAII CATG 3 cut(s) 199, 211, 478
CviJI RGCY 9 cut(s) 9, 45, 81, 122, 183, 220, 390, 407, 423
CviKI_1 RGCY 9 cut(s) 9, 45, 81, 122, 183, 220, 390, 407, 423
CviQI GTAC 1 cut(s) 495
DdeI CTNAG 2 cut(s) 123, 416
DpnI GATC 5 cut(s) 267, 275, 503, 513, 533
DpnII GATC 5 cut(s) 265, 273, 501, 511, 531
EaeI YGGCCR 1 cut(s) 421
EciI GGCGGA 3 cut(s) 118, 134, 342
Eco105I TACGTA 1 cut(s) 494
Eco147I AGGCCT 1 cut(s) 9
Eco31I GGTCTC 1 cut(s) 128
Eco47I GGWCC 2 cut(s) 238, 442
Eco57I CTGAAG 1 cut(s) 163
Eco72I CACGTG 1 cut(s) 378
EcoRII CCWGG 1 cut(s) 39
FaeI CATG 3 cut(s) 202, 214, 481
FaiI YATR 4 cut(s) 200, 212, 470, 479
FaqI GGGAC 2 cut(s) 416, 488
FatI CATG 3 cut(s) 198, 210, 477
FauI CCCGC 3 cut(s) 72, 146, 364
FblI GTMKAC 1 cut(s) 469
Fnu4HI GCNGC 5 cut(s) 148, 184, 196, 279, 421
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 5 cut(s) 148, 184, 196, 279, 421
FspBI CTAG 1 cut(s) 535
GluI GCNGC 5 cut(s) 148, 184, 196, 279, 421
HaeIII GGCC 6 cut(s) 9, 45, 81, 390, 407, 423
HapII CCGG 1 cut(s) 78
HgaI GACGC 1 cut(s) 370
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 3 cut(s) 202, 214, 481
HinfI GANTC 2 cut(s) 125, 395
HpaII CCGG 1 cut(s) 78
Hpy166II GTNNAC 3 cut(s) 37, 241, 470
Hpy188I TCNGA 3 cut(s) 160, 301, 511
Hpy188III TCNNGA 2 cut(s) 211, 269
Hpy8I GTNNAC 3 cut(s) 37, 241, 470
Hpy99I CGWCG 4 cut(s) 32, 35, 119, 386
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4IV ACGT 6 cut(s) 30, 117, 207, 377, 493, 517
HpyCH4V TGCA 3 cut(s) 4, 21, 198
HpyF10VI GCNNNNNNNGC 6 cut(s) 128, 147, 192, 201, 331, 387
HpyF3I CTNAG 2 cut(s) 123, 416
HpySE526I ACGT 6 cut(s) 30, 117, 207, 377, 493, 517
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 3 cut(s) 202, 214, 481
Kzo9I GATC 5 cut(s) 265, 273, 501, 511, 531
LmnI GCTCC 1 cut(s) 225
LpnPI CCDG 7 cut(s) 26, 53, 91, 180, 205, 425, 445
Lsp1109I GCAGC 1 cut(s) 182
LweI GCATC 1 cut(s) 150
MaeI CTAG 1 cut(s) 535
MaeII ACGT 6 cut(s) 30, 117, 207, 377, 493, 517
MalI GATC 5 cut(s) 267, 275, 503, 513, 533
MboI GATC 5 cut(s) 265, 273, 501, 511, 531
MboII GAAGA 3 cut(s) 169, 226, 329
MhlI GDGCHC 1 cut(s) 165
MluCI AATT 2 cut(s) 257, 488
MlyI GAGTC 1 cut(s) 134
MmeI TCCRAC 1 cut(s) 114
MslI CAYNNNNRTG 1 cut(s) 116
MspA1I CMGCKG 1 cut(s) 420
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 2 cut(s) 41, 78
MvaI CCWGG 1 cut(s) 41
MwoI GCNNNNNNNGC 6 cut(s) 128, 147, 192, 201, 331, 387
NciI CCSGG 1 cut(s) 78
NdeII GATC 5 cut(s) 265, 273, 501, 511, 531
NlaIII CATG 3 cut(s) 202, 214, 481
NlaIV GGNNCC 1 cut(s) 239
NmeAIII GCCGAG 1 cut(s) 157
NspI RCATGY 2 cut(s) 202, 481
PagI TCATGA 1 cut(s) 210
PceI AGGCCT 1 cut(s) 9
PciI ACATGT 1 cut(s) 477
PcsI WCGNNNNNNNCGW 3 cut(s) 261, 390, 399
PfeI GAWTC 1 cut(s) 395
PflFI GACNNNGTC 1 cut(s) 32
PkrI GCNGC 5 cut(s) 149, 185, 197, 280, 422
Ple19I CGATCG 1 cut(s) 504
PleI GAGTC 1 cut(s) 133
PmaCI CACGTG 1 cut(s) 378
PmlI CACGTG 1 cut(s) 378
PpsI GAGTC 1 cut(s) 133
Ppu21I YACGTR 2 cut(s) 378, 494
PscI ACATGT 1 cut(s) 477
Psp6I CCWGG 1 cut(s) 39
PspCI CACGTG 1 cut(s) 378
PspGI CCWGG 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 239
PspPI GGNCC 5 cut(s) 43, 80, 238, 406, 442
PsyI GACNNNGTC 1 cut(s) 32
PvuI CGATCG 1 cut(s) 504
RsaI GTAC 1 cut(s) 496
RsaNI GTAC 1 cut(s) 495
RseI CAYNNNNRTG 1 cut(s) 116
SatI GCNGC 5 cut(s) 148, 184, 196, 279, 421
Sau3AI GATC 5 cut(s) 265, 273, 501, 511, 531
Sau96I GGNCC 5 cut(s) 43, 80, 238, 406, 442
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 2 cut(s) 41, 78
SduI GDGCHC 1 cut(s) 165
SfaNI GCATC 1 cut(s) 150
SinI GGWCC 2 cut(s) 238, 442
SmiMI CAYNNNNRTG 1 cut(s) 116
SnaBI TACGTA 1 cut(s) 494
Sse9I AATT 2 cut(s) 257, 488
SseBI AGGCCT 1 cut(s) 9
SspMI CTAG 1 cut(s) 535
StuI AGGCCT 1 cut(s) 9
StyD4I CCNGG 2 cut(s) 39, 76
TaaI ACNGT 1 cut(s) 250
TaiI ACGT 6 cut(s) 33, 120, 210, 380, 496, 520
TaqI TCGA 5 cut(s) 114, 255, 393, 500, 530
TasI AATT 2 cut(s) 257, 488
TauI GCSGC 4 cut(s) 150, 186, 281, 423
TfiI GAWTC 1 cut(s) 395
TseI GCWGC 1 cut(s) 195
TspDTI ATGAA 2 cut(s) 227, 355
Tth111I GACNNNGTC 1 cut(s) 32
VpaK11BI GGWCC 2 cut(s) 238, 442
XceI RCATGY 2 cut(s) 202, 481
XmiI GTMKAC 1 cut(s) 469
XspI CTAG 1 cut(s) 535
ZraI GACGTC 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.