MD15G1057800.v1.1

glutaredoxin-C6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0015048
Physical Location & Seq
Forward (+)
3877106 .. 3878166
1061 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1057800.v1.1.491

Sequence Viewer

Length: 447 bp
ATGCAAGGCCTACGGCGTTGCTCCAACGACGTCGTCCACCTCGGCCTATCCTCCGCCCCGACCCGCCCCCCACCCTCCCCCCCTCCCCCAAACCATTCTTCTTCCACCCTCTCCATCGACGTCGCCGAGTCCGCTGAGACCCGCATCCGCCGCCTCATCTCCGAGCACCCTGTCATCATCTTCAGCCGAAACTCCTGCTGCATGTGCCATGTCATGAAGAAGCTCCTCGCCACCATTGGCGTCCACCCCACCGTCATCGAATTGGACGATGACGAGATCGCTGCTCTCCCCCACGACGACCAAGAACAACAACAGGCTTGTAATACTCCGCCCGCCGTCTTCATCGGAGGCACGTGCGTCGGCGGCCTCGAGTCCCTCGTCGCCCTCCACCTCAGCGGCCACCTCGTCCCTAAACTCGTCCAAGTCGGTGCCCTCTGGGAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

149

Amino Acids

15.91

Weight (kDa)

6.02

Isoelectric Point (pI)

64.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 58 - 120 1.3e-09 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015048)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33040
fragaria_vesca FvH4_2g31700
malus_domestica MD08G1063800.v1.1 MD15G1057800.v1.1
prunus_persica Prupe.1G410500_v2.0.a1 Prupe.1G410500_v2.0.a1
pyrus_communis pycom08g05250
rosa_chinensis RchiOBHm_Chr6g0311131
rosa_multiflora Rmu_sc0008967.1_g000007
rosa_roxburghii Rroxscaffold_7G00158000
rosa_rugosa Rorug06G0385700
rosa_samantha Rh6AG499700 Rh6BG510400 Rh6CG516100 Rh6DG502600
rosa_wichuraiana Rw6G043530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 33, 123
AccB1I GGYRCC 1 cut(s) 428
AcoI YGGCCR 1 cut(s) 397
AcuI CTGAAG 1 cut(s) 166
AcvI CACGTG 1 cut(s) 354
AcyI GRCGYC 3 cut(s) 30, 120, 240
AjuI GAANNNNNNNTTGG 2 cut(s) 82, 114
AluBI AGCT 1 cut(s) 223
AluI AGCT 1 cut(s) 223
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 131
Ama87I CYCGRG 1 cut(s) 368
AoxI GGCC 4 cut(s) 7, 43, 364, 397
ApeKI GCWGC 2 cut(s) 198, 281
AvaI CYCGRG 1 cut(s) 368
BaeGI GKGCMC 1 cut(s) 433
BanI GGYRCC 1 cut(s) 428
BbrPI CACGTG 1 cut(s) 354
BbsI GAAGAC 1 cut(s) 331
Bbv12I GWGCWC 1 cut(s) 168
BbvCI CCTCAGC 1 cut(s) 392
BbvI GCAGC 2 cut(s) 185, 268
BccI CCATC 1 cut(s) 122
BceAI ACGGC 2 cut(s) 29, 320
BcgI CGANNNNNNTGC 6 cut(s) 177, 211, 263, 297, 340, 374
BcoDI GTCTC 1 cut(s) 131
BisI GCNGC 5 cut(s) 151, 199, 282, 364, 397
BlsI GCNGC 5 cut(s) 152, 200, 283, 365, 398
BmeT110I CYCGRG 1 cut(s) 368
BmiI GGNNCC 1 cut(s) 430
BmsI GCATC 1 cut(s) 153
BpiI GAAGAC 1 cut(s) 331
Bpu10I CCTNAGC 1 cut(s) 392
BsaAI YACGTR 1 cut(s) 354
BsaHI GRCGYC 3 cut(s) 30, 120, 240
BsaI GGTCTC 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 40
BseDI CCNNGG 1 cut(s) 40
BseGI GGATG 1 cut(s) 144
BseMII CTCAG 2 cut(s) 126, 406
BseRI GAGGAG 1 cut(s) 215
BseSI GKGCMC 1 cut(s) 433
BseXI GCAGC 2 cut(s) 185, 268
BshFI GGCC 4 cut(s) 9, 45, 366, 399
BshNI GGYRCC 1 cut(s) 428
BsiHKAI GWGCWC 1 cut(s) 168
BsiHKCI CYCGRG 1 cut(s) 368
BslFI GGGAC 2 cut(s) 358, 392
BsmAI GTCTC 1 cut(s) 131
BsmFI GGGAC 2 cut(s) 358, 392
BsnI GGCC 4 cut(s) 9, 45, 366, 399
Bso31I GGTCTC 1 cut(s) 131
BsoBI CYCGRG 1 cut(s) 368
Bsp1286I GDGCHC 2 cut(s) 168, 433
Bsp143I GATC 1 cut(s) 276
BspANI GGCC 4 cut(s) 9, 45, 366, 399
BspCNI CTCAG 2 cut(s) 127, 405
BspHI TCATGA 1 cut(s) 213
BspLI GGNNCC 1 cut(s) 430
BspT107I GGYRCC 1 cut(s) 428
BspTNI GGTCTC 1 cut(s) 131
BssECI CCNNGG 1 cut(s) 40
BssMI GATC 1 cut(s) 276
BssNI GRCGYC 3 cut(s) 30, 120, 240
Bst4CI ACNGT 1 cut(s) 253
BstACI GRCGYC 3 cut(s) 30, 120, 240
BstBAI YACGTR 1 cut(s) 354
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 2 cut(s) 135, 392
BstF5I GGATG 1 cut(s) 144
BstKTI GATC 1 cut(s) 279
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 1 cut(s) 276
BstMWI GCNNNNNNNGC 4 cut(s) 131, 150, 204, 363
BstNSI RCATGY 1 cut(s) 205
BstSLI GKGCMC 1 cut(s) 433
BstV1I GCAGC 2 cut(s) 185, 268
BstV2I GAAGAC 1 cut(s) 331
BsuRI GGCC 4 cut(s) 9, 45, 366, 399
BtsCI GGATG 1 cut(s) 144
Cac8I GCNNGC 1 cut(s) 333
CciI TCATGA 1 cut(s) 213
CseI GACGC 2 cut(s) 229, 346
CviAII CATG 3 cut(s) 202, 209, 214
CviJI RGCY 7 cut(s) 9, 45, 186, 223, 317, 366, 399
CviKI_1 RGCY 7 cut(s) 9, 45, 186, 223, 317, 366, 399
DdeI CTNAG 2 cut(s) 135, 392
DpnI GATC 1 cut(s) 278
DpnII GATC 1 cut(s) 276
EaeI YGGCCR 1 cut(s) 397
EciI GGCGGA 3 cut(s) 43, 137, 318
Eco147I AGGCCT 1 cut(s) 9
Eco31I GGTCTC 1 cut(s) 131
Eco57I CTGAAG 1 cut(s) 166
Eco72I CACGTG 1 cut(s) 354
Eco88I CYCGRG 1 cut(s) 368
FaeI CATG 3 cut(s) 205, 212, 217
FaiI YATR 3 cut(s) 203, 210, 215
FaqI GGGAC 2 cut(s) 358, 392
FatI CATG 3 cut(s) 201, 208, 213
FauI CCCGC 3 cut(s) 71, 149, 340
Fnu4HI GCNGC 5 cut(s) 151, 199, 282, 364, 397
FokI GGATG 1 cut(s) 131
Fsp4HI GCNGC 5 cut(s) 151, 199, 282, 364, 397
GluI GCNGC 5 cut(s) 151, 199, 282, 364, 397
HaeIII GGCC 4 cut(s) 9, 45, 366, 399
HgaI GACGC 2 cut(s) 229, 346
Hin1I GRCGYC 3 cut(s) 30, 120, 240
Hin1II CATG 3 cut(s) 205, 212, 217
HinfI GANTC 2 cut(s) 128, 371
Hpy166II GTNNAC 2 cut(s) 37, 244
Hpy188I TCNGA 2 cut(s) 163, 347
Hpy188III TCNNGA 1 cut(s) 214
Hpy8I GTNNAC 2 cut(s) 37, 244
Hpy99I CGWCG 7 cut(s) 32, 35, 122, 125, 299, 362, 383
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4IV ACGT 3 cut(s) 30, 120, 353
HpyCH4V TGCA 2 cut(s) 4, 201
HpyF10VI GCNNNNNNNGC 4 cut(s) 131, 150, 204, 363
HpyF3I CTNAG 2 cut(s) 135, 392
HpySE526I ACGT 3 cut(s) 30, 120, 353
Hsp92I GRCGYC 3 cut(s) 30, 120, 240
Hsp92II CATG 3 cut(s) 205, 212, 217
Kzo9I GATC 1 cut(s) 276
LmnI GCTCC 2 cut(s) 26, 228
LpnPI CCDG 4 cut(s) 183, 208, 299, 421
Lsp1109I GCAGC 2 cut(s) 185, 268
LweI GCATC 1 cut(s) 153
MaeII ACGT 3 cut(s) 30, 120, 353
MalI GATC 1 cut(s) 278
MboI GATC 1 cut(s) 276
MboII GAAGA 5 cut(s) 90, 93, 172, 229, 331
MhlI GDGCHC 2 cut(s) 168, 433
MluCI AATT 1 cut(s) 260
MlyI GAGTC 2 cut(s) 137, 380
MmeI TCCRAC 1 cut(s) 48
MspA1I CMGCKG 2 cut(s) 134, 396
MwoI GCNNNNNNNGC 4 cut(s) 131, 150, 204, 363
NdeII GATC 1 cut(s) 276
NlaIII CATG 3 cut(s) 205, 212, 217
NlaIV GGNNCC 1 cut(s) 430
NmeAIII GCCGAG 2 cut(s) 21, 151
NspI RCATGY 1 cut(s) 205
PaeR7I CTCGAG 1 cut(s) 368
PagI TCATGA 1 cut(s) 213
PceI AGGCCT 1 cut(s) 9
PcsI WCGNNNNNNNCGW 4 cut(s) 123, 264, 366, 375
PflFI GACNNNGTC 1 cut(s) 32
PkrI GCNGC 5 cut(s) 152, 200, 283, 365, 398
PleI GAGTC 2 cut(s) 136, 379
PmaCI CACGTG 1 cut(s) 354
PmlI CACGTG 1 cut(s) 354
PpsI GAGTC 2 cut(s) 136, 379
Ppu21I YACGTR 1 cut(s) 354
PspCI CACGTG 1 cut(s) 354
PspN4I GGNNCC 1 cut(s) 430
PspXI VCTCGAGB 1 cut(s) 368
PsyI GACNNNGTC 1 cut(s) 32
SatI GCNGC 5 cut(s) 151, 199, 282, 364, 397
Sau3AI GATC 1 cut(s) 276
SchI GAGTC 2 cut(s) 137, 380
SduI GDGCHC 2 cut(s) 168, 433
SetI ASST 7 cut(s) 33, 42, 123, 225, 356, 393, 405
SfaNI GCATC 1 cut(s) 153
Sfr274I CTCGAG 1 cut(s) 368
SlaI CTCGAG 1 cut(s) 368
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
Sse9I AATT 1 cut(s) 260
SseBI AGGCCT 1 cut(s) 9
StuI AGGCCT 1 cut(s) 9
TaaI ACNGT 1 cut(s) 253
TaiI ACGT 3 cut(s) 33, 123, 356
TaqI TCGA 3 cut(s) 117, 258, 369
TasI AATT 1 cut(s) 260
TauI GCSGC 3 cut(s) 153, 366, 399
TseI GCWGC 2 cut(s) 198, 281
TspDTI ATGAA 2 cut(s) 230, 331
Tth111I GACNNNGTC 1 cut(s) 32
XceI RCATGY 1 cut(s) 205
XhoI CTCGAG 1 cut(s) 368
ZraI GACGTC 2 cut(s) 31, 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.