AT4G33640

Costars

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0016154
Physical Location & Seq
Reverse (-)
16159548 .. 16160489
942 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G33640.2

Sequence Viewer

Length: 288 bp
ATGAACGTAGACGAAGAGATTCAGAAACTGGAAGAAGAGATCCATCGTCTTGGTTCTCGTCAGACCGATGGCTCTTACAAGGTGACGTTTGGAGTGTTGTTCAATGACGATCGATGTGCCAACATCTTTGAAGCATTGGTTGGGACTCTGAGAGCTGCCAAGAAACGCAAAATAGTCGCATTTGAAGGTGAACTTTTGCTTCAAGGCGTTCACGATAAGGTTGAGATCACTCTCCGACCAACACCACCGCCACCGCAAGCTGCTGCTGCTACTGCAGCCTCCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Costars

Protein Analysis

95

Amino Acids

10.42

Weight (kDa)

5.64

Isoelectric Point (pI)

49.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Costars PF14705 68 - 144 3.2e-31 Costars
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016154)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33640
fragaria_vesca FvH4_2g11550
malus_domestica MD05G1048500.v1.1 MD10G1054900.v1.1
prunus_persica Prupe.8G071000_v2.0.a1
pyrus_communis pycom05g04010 pycom10g04190
rosa_chinensis RchiOBHm_Chr6g0270691
rosa_multiflora Rmu_sc0000642.1_g000003
rosa_roxburghii Rroxscaffold_7G00197680
rosa_rugosa Rorug06G0055900
rosa_samantha Rh6AG175100 Rh6BG178500 Rh6DG166900
rosa_wichuraiana Rw6G014920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 9
AciI CCGC 2 cut(s) 248, 254
AclWI GGATC 1 cut(s) 34
AgsI TTSAA 4 cut(s) 103, 131, 185, 203
AjuI GAANNNNNNNTTGG 2 cut(s) 123, 155
AluBI AGCT 2 cut(s) 155, 260
AluI AGCT 2 cut(s) 155, 260
AlwI GGATC 1 cut(s) 34
AlwNI CAGNNNCTG 1 cut(s) 28
ApeKI GCWGC 5 cut(s) 155, 260, 263, 266, 275
Asp700I GAANNNNTTC 1 cut(s) 18
AsuHPI GGTGA 2 cut(s) 94, 200
BbvI GCAGC 4 cut(s) 142, 247, 250, 253
BccI CCATC 2 cut(s) 51, 62
BcgI CGANNNNNNTGC 4 cut(s) 98, 132, 157, 191
BfmI CTRYAG 1 cut(s) 273
BisI GCNGC 5 cut(s) 156, 261, 264, 267, 276
BlsI GCNGC 5 cut(s) 157, 262, 265, 268, 277
Bsa29I ATCGAT 1 cut(s) 112
Bse1I ACTGG 1 cut(s) 33
BseCI ATCGAT 1 cut(s) 112
BseMII CTCAG 1 cut(s) 140
BseNI ACTGG 1 cut(s) 33
BseRI GAGGAG 1 cut(s) 271
BseXI GCAGC 4 cut(s) 142, 247, 250, 253
Bsh1285I CGRYCG 1 cut(s) 112
BshVI ATCGAT 1 cut(s) 112
BsiEI CGRYCG 1 cut(s) 112
BslFI GGGAC 1 cut(s) 157
BsmFI GGGAC 1 cut(s) 157
Bsp143I GATC 3 cut(s) 39, 109, 225
BspACI CCGC 2 cut(s) 248, 254
BspCNI CTCAG 1 cut(s) 141
BspDI ATCGAT 1 cut(s) 112
BspMAI CTGCAG 1 cut(s) 277
BspPI GGATC 1 cut(s) 34
BsrI ACTGG 1 cut(s) 33
BssMI GATC 3 cut(s) 39, 109, 225
Bst6I CTCTTC 2 cut(s) 9, 30
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 1 cut(s) 149
BstKTI GATC 3 cut(s) 42, 112, 228
BstMBI GATC 3 cut(s) 39, 109, 225
BstMCI CGRYCG 1 cut(s) 112
BstMWI GCNNNNNNNGC 3 cut(s) 266, 272, 275
BstSFI CTRYAG 1 cut(s) 273
BstV1I GCAGC 4 cut(s) 142, 247, 250, 253
BstX2I RGATCY 1 cut(s) 39
BstXI CCANNNNNNTGG 1 cut(s) 50
BstYI RGATCY 1 cut(s) 39
Bsu15I ATCGAT 1 cut(s) 112
BsuTUI ATCGAT 1 cut(s) 112
Cac8I GCNNGC 1 cut(s) 258
CaiI CAGNNNCTG 1 cut(s) 28
ClaI ATCGAT 1 cut(s) 112
CviJI RGCY 4 cut(s) 72, 155, 260, 278
CviKI_1 RGCY 4 cut(s) 72, 155, 260, 278
DdeI CTNAG 1 cut(s) 149
DpnI GATC 3 cut(s) 41, 111, 227
DpnII GATC 3 cut(s) 39, 109, 225
Eam1104I CTCTTC 2 cut(s) 9, 30
EarI CTCTTC 2 cut(s) 9, 30
FalI AAGNNNNNCTT 2 cut(s) 177, 209
FaqI GGGAC 1 cut(s) 157
FblI GTMKAC 1 cut(s) 9
Fnu4HI GCNGC 5 cut(s) 156, 261, 264, 267, 276
Fsp4HI GCNGC 5 cut(s) 156, 261, 264, 267, 276
GluI GCNGC 5 cut(s) 156, 261, 264, 267, 276
HinfI GANTC 2 cut(s) 19, 145
HphI GGTGA 2 cut(s) 94, 200
Hpy166II GTNNAC 3 cut(s) 10, 191, 211
Hpy188I TCNGA 4 cut(s) 24, 63, 150, 236
Hpy188III TCNNGA 1 cut(s) 212
Hpy8I GTNNAC 3 cut(s) 10, 191, 211
HpyAV CCTTC 1 cut(s) 179
HpyCH4IV ACGT 2 cut(s) 6, 86
HpyCH4V TGCA 1 cut(s) 275
HpyF10VI GCNNNNNNNGC 3 cut(s) 266, 272, 275
HpyF3I CTNAG 1 cut(s) 149
HpySE526I ACGT 2 cut(s) 6, 86
Kzo9I GATC 3 cut(s) 39, 109, 225
LpnPI CCDG 1 cut(s) 14
Lsp1109I GCAGC 4 cut(s) 142, 247, 250, 253
MaeII ACGT 2 cut(s) 6, 86
MaeIII GTNAC 1 cut(s) 82
MalI GATC 3 cut(s) 41, 111, 227
MboI GATC 3 cut(s) 39, 109, 225
MboII GAAGA 3 cut(s) 26, 44, 47
MflI RGATCY 1 cut(s) 39
MlyI GAGTC 1 cut(s) 139
MmeI TCCRAC 1 cut(s) 259
MroXI GAANNNNTTC 1 cut(s) 18
MwoI GCNNNNNNNGC 3 cut(s) 266, 272, 275
NdeII GATC 3 cut(s) 39, 109, 225
NmuCI GTSAC 1 cut(s) 82
PdmI GAANNNNTTC 1 cut(s) 18
PfeI GAWTC 1 cut(s) 19
PkrI GCNGC 5 cut(s) 157, 262, 265, 268, 277
Ple19I CGATCG 1 cut(s) 112
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
PstI CTGCAG 1 cut(s) 277
PstNI CAGNNNCTG 1 cut(s) 28
PsuI RGATCY 1 cut(s) 39
PvuI CGATCG 1 cut(s) 112
SatI GCNGC 5 cut(s) 156, 261, 264, 267, 276
Sau3AI GATC 3 cut(s) 39, 109, 225
SchI GAGTC 1 cut(s) 139
SetI ASST 7 cut(s) 9, 84, 89, 157, 190, 222, 262
SfcI CTRYAG 1 cut(s) 273
SgeI CNNG 8 cut(s) 41, 62, 69, 91, 172, 215, 224, 269
SsiI CCGC 2 cut(s) 248, 254
TaiI ACGT 2 cut(s) 9, 89
TaqI TCGA 1 cut(s) 112
TaqII GACCGA 1 cut(s) 80
TfiI GAWTC 1 cut(s) 19
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 5 cut(s) 155, 260, 263, 266, 275
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 1 cut(s) 17
XmiI GTMKAC 1 cut(s) 9
XmnI GAANNNNTTC 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.