MD10G1054900.v1.1

Costars family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0016154
Physical Location & Seq
Reverse (-)
7494634 .. 7496407
1774 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1054900.v1.1.491

Sequence Viewer

Length: 294 bp
ATGAATGTAGAAGAAGAGGTCGAGCGTCTCAGAGAAGAAATCCAAAGGCTCGGCAAGCTCCAAGACGATGGTTCTTACAAGGTCACATTTGGGGTGCTATTTAATGATGATAGATGTGCAAACATATTCGAAGCGTTGGTTGGGACGCTAAGGGCAGCAAAAAGGCGGAAATTTCTCACATATGATGGTGAGCTACTACTGCAGGGTGTCCATGACAATGTAGAGATCATACTCAAACCAAAACCGGCAGCAGCGGCAGAGGCAACTACTGCAGTGCCAGTCGGGACAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Costars

Protein Analysis

98

Amino Acids

10.76

Weight (kDa)

5.15

Isoelectric Point (pI)

51.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Costars PF14705 2 - 78 2.7e-29 Costars
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016154)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33640
fragaria_vesca FvH4_2g11550
malus_domestica MD05G1048500.v1.1 MD10G1054900.v1.1
prunus_persica Prupe.8G071000_v2.0.a1
pyrus_communis pycom05g04010 pycom10g04190
rosa_chinensis RchiOBHm_Chr6g0270691
rosa_multiflora Rmu_sc0000642.1_g000003
rosa_roxburghii Rroxscaffold_7G00197680
rosa_rugosa Rorug06G0055900
rosa_samantha Rh6AG175100 Rh6BG178500 Rh6DG166900
rosa_wichuraiana Rw6G014920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 166, 254
AcsI RAATTY 1 cut(s) 170
AjuI GAANNNNNNNTTGG 2 cut(s) 123, 155
AluBI AGCT 2 cut(s) 58, 193
AluI AGCT 2 cut(s) 58, 193
Alw26I GTCTC 1 cut(s) 32
ApeKI GCWGC 3 cut(s) 155, 248, 251
ApoI RAATTY 1 cut(s) 170
AsuHPI GGTGA 1 cut(s) 200
AsuII TTCGAA 1 cut(s) 129
BbvI GCAGC 3 cut(s) 167, 260, 263
BccI CCATC 2 cut(s) 62, 179
BcoDI GTCTC 1 cut(s) 32
BfmI CTRYAG 2 cut(s) 200, 270
BisI GCNGC 4 cut(s) 156, 249, 252, 255
BlsI GCNGC 4 cut(s) 157, 250, 253, 256
Bpu10I CCTNAGC 1 cut(s) 149
Bpu14I TTCGAA 1 cut(s) 129
Bse118I RCCGGY 1 cut(s) 244
Bse1I ACTGG 1 cut(s) 278
BseMII CTCAG 1 cut(s) 43
BseNI ACTGG 1 cut(s) 278
BseXI GCAGC 3 cut(s) 167, 260, 263
BsiSI CCGG 1 cut(s) 245
BslFI GGGAC 1 cut(s) 157
BsmAI GTCTC 1 cut(s) 32
BsmBI CGTCTC 1 cut(s) 32
BsmFI GGGAC 1 cut(s) 157
Bsp119I TTCGAA 1 cut(s) 129
Bsp143I GATC 1 cut(s) 225
BspACI CCGC 2 cut(s) 166, 254
BspCNI CTCAG 1 cut(s) 42
BspMAI CTGCAG 2 cut(s) 204, 274
BspT104I TTCGAA 1 cut(s) 129
BsrFI RCCGGY 1 cut(s) 244
BsrI ACTGG 1 cut(s) 278
BssAI RCCGGY 1 cut(s) 244
BssMI GATC 1 cut(s) 225
Bst6I CTCTTC 1 cut(s) 9
BstAPI GCANNNNNTGC 1 cut(s) 269
BstBI TTCGAA 1 cut(s) 129
BstC8I GCNNGC 1 cut(s) 56
BstDEI CTNAG 2 cut(s) 29, 149
BstKTI GATC 1 cut(s) 228
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 1 cut(s) 225
BstMWI GCNNNNNNNGC 5 cut(s) 55, 199, 254, 260, 269
BstSFI CTRYAG 2 cut(s) 200, 270
BstV1I GCAGC 3 cut(s) 167, 260, 263
BstXI CCANNNNNNTGG 1 cut(s) 68
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 1 cut(s) 279
Cac8I GCNNGC 1 cut(s) 56
Cfr10I RCCGGY 1 cut(s) 244
CseI GACGC 2 cut(s) 14, 154
CviAII CATG 1 cut(s) 212
CviJI RGCY 3 cut(s) 49, 58, 193
CviKI_1 RGCY 3 cut(s) 49, 58, 193
DdeI CTNAG 2 cut(s) 29, 149
DpnI GATC 1 cut(s) 227
DpnII GATC 1 cut(s) 225
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
EciI GGCGGA 1 cut(s) 181
Esp3I CGTCTC 1 cut(s) 32
FaeI CATG 1 cut(s) 215
FaiI YATR 5 cut(s) 125, 181, 183, 213, 230
FaqI GGGAC 1 cut(s) 157
FatI CATG 1 cut(s) 211
FauNDI CATATG 1 cut(s) 181
Fnu4HI GCNGC 4 cut(s) 156, 249, 252, 255
Fsp4HI GCNGC 4 cut(s) 156, 249, 252, 255
GluI GCNGC 4 cut(s) 156, 249, 252, 255
HapII CCGG 1 cut(s) 245
HgaI GACGC 2 cut(s) 14, 154
Hin1II CATG 1 cut(s) 215
HpaII CCGG 1 cut(s) 245
HphI GGTGA 1 cut(s) 200
Hpy188I TCNGA 1 cut(s) 32
Hpy188III TCNNGA 1 cut(s) 283
HpyCH4V TGCA 3 cut(s) 119, 202, 272
HpyF10VI GCNNNNNNNGC 5 cut(s) 55, 199, 254, 260, 269
HpyF3I CTNAG 2 cut(s) 29, 149
Hsp92II CATG 1 cut(s) 215
Kzo9I GATC 1 cut(s) 225
LmnI GCTCC 1 cut(s) 63
LpnPI CCDG 2 cut(s) 188, 258
Lsp1109I GCAGC 3 cut(s) 167, 260, 263
MaeIII GTNAC 1 cut(s) 82
MalI GATC 1 cut(s) 227
MboI GATC 1 cut(s) 225
MboII GAAGA 3 cut(s) 23, 26, 47
MluCI AATT 1 cut(s) 170
MnlI CCTC 2 cut(s) 10, 253
MseI TTAA 1 cut(s) 102
MslI CAYNNNNRTG 1 cut(s) 216
MspA1I CMGCKG 1 cut(s) 254
MspI CCGG 1 cut(s) 245
MwoI GCNNNNNNNGC 5 cut(s) 55, 199, 254, 260, 269
NdeI CATATG 1 cut(s) 181
NdeII GATC 1 cut(s) 225
NlaIII CATG 1 cut(s) 215
NmeAIII GCCGAG 1 cut(s) 30
NmuCI GTSAC 1 cut(s) 82
NspV TTCGAA 1 cut(s) 129
PkrI GCNGC 4 cut(s) 157, 250, 253, 256
PstI CTGCAG 2 cut(s) 204, 274
RseI CAYNNNNRTG 1 cut(s) 216
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 4 cut(s) 156, 249, 252, 255
Sau3AI GATC 1 cut(s) 225
SetI ASST 4 cut(s) 21, 60, 84, 195
SfcI CTRYAG 2 cut(s) 200, 270
SfuI TTCGAA 1 cut(s) 129
SgeI CNNG 9 cut(s) 34, 62, 67, 74, 91, 215, 224, 257, 290
SmiMI CAYNNNNRTG 1 cut(s) 216
Sse9I AATT 1 cut(s) 170
SsiI CCGC 2 cut(s) 166, 254
TaqI TCGA 2 cut(s) 21, 129
TasI AATT 1 cut(s) 170
TauI GCSGC 1 cut(s) 257
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TscAI CASTG 1 cut(s) 279
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 3 cut(s) 155, 248, 251
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 279
XapI RAATTY 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.