Prupe.8G071000_v2.0.a1

Costars family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
10378372 .. 10380732
2361 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G071000.1

Sequence Viewer

Length: 291 bp
ATGAATGTTGAAGAAGAGGTCGAGCGTCTGAAAGAAGAAATCCAAAGGCTTGGCAAAGTCCAAGACGATGGTTCTTACAAGGTCACATTCGGGGTGCTATTTAATGATGATAGATGCGCAAACATATTTGAAGCATTGGTTGGGACGCTAAGAGCGGCAAAGAAGCGGAAATTTCTCACATATGAAGGCGAGCTACTGTTGCAAGGAGTCCATGACAATGTGGAAATCATACTTAAACCAACCCTAGCAGTAGCAGCACCTAAGGCAACTGATGCAGTTGGGACGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

97

Amino Acids

10.64

Weight (kDa)

5.15

Isoelectric Point (pI)

32.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016154)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33640
fragaria_vesca FvH4_2g11550
malus_domestica MD05G1048500.v1.1 MD10G1054900.v1.1
prunus_persica Prupe.8G071000_v2.0.a1
pyrus_communis pycom05g04010 pycom10g04190
rosa_chinensis RchiOBHm_Chr6g0270691
rosa_multiflora Rmu_sc0000642.1_g000003
rosa_roxburghii Rroxscaffold_7G00197680
rosa_rugosa Rorug06G0055900
rosa_samantha Rh6AG175100 Rh6BG178500 Rh6DG166900
rosa_wichuraiana Rw6G014920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 118
AccBSI CCGCTC 1 cut(s) 155
AciI CCGC 2 cut(s) 155, 166
AcsI RAATTY 1 cut(s) 170
AgsI TTSAA 2 cut(s) 11, 131
AjuI GAANNNNNNNTTGG 2 cut(s) 123, 155
AluBI AGCT 1 cut(s) 193
AluI AGCT 1 cut(s) 193
ApeKI GCWGC 1 cut(s) 254
ApoI RAATTY 1 cut(s) 170
AspLEI GCGC 1 cut(s) 119
AxyI CCTNAGG 1 cut(s) 261
BarI GAAGNNNNNNTAC 2 cut(s) 177, 209
BbvI GCAGC 1 cut(s) 266
BccI CCATC 1 cut(s) 62
BfaI CTAG 1 cut(s) 245
BisI GCNGC 2 cut(s) 156, 255
BlsI GCNGC 2 cut(s) 157, 256
BmsI GCATC 2 cut(s) 104, 262
Bse21I CCTNAGG 1 cut(s) 261
BseXI GCAGC 1 cut(s) 266
BslFI GGGAC 1 cut(s) 157
BsmFI GGGAC 1 cut(s) 157
BspACI CCGC 2 cut(s) 155, 166
BsrBI CCGCTC 1 cut(s) 155
Bst4CI ACNGT 1 cut(s) 198
Bst6I CTCTTC 1 cut(s) 9
BstAPI GCANNNNNTGC 1 cut(s) 272
BstC8I GCNNGC 1 cut(s) 191
BstDEI CTNAG 2 cut(s) 149, 261
BstHHI GCGC 1 cut(s) 119
BstMWI GCNNNNNNNGC 4 cut(s) 199, 254, 263, 272
BstV1I GCAGC 1 cut(s) 266
BstXI CCANNNNNNTGG 2 cut(s) 50, 68
Bsu36I CCTNAGG 1 cut(s) 261
Cac8I GCNNGC 1 cut(s) 191
CfoI GCGC 1 cut(s) 119
CseI GACGC 2 cut(s) 14, 154
CviAII CATG 1 cut(s) 212
CviJI RGCY 2 cut(s) 49, 193
CviKI_1 RGCY 2 cut(s) 49, 193
DdeI CTNAG 2 cut(s) 149, 261
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
Eco81I CCTNAGG 1 cut(s) 261
FaeI CATG 1 cut(s) 215
FaiI YATR 5 cut(s) 125, 181, 183, 213, 230
FaqI GGGAC 1 cut(s) 157
FatI CATG 1 cut(s) 211
FauNDI CATATG 1 cut(s) 181
Fnu4HI GCNGC 2 cut(s) 156, 255
Fsp4HI GCNGC 2 cut(s) 156, 255
FspBI CTAG 1 cut(s) 245
FspI TGCGCA 1 cut(s) 118
GlaI GCGC 1 cut(s) 118
GluI GCNGC 2 cut(s) 156, 255
HgaI GACGC 2 cut(s) 14, 154
HhaI GCGC 1 cut(s) 119
Hin1II CATG 1 cut(s) 215
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HinfI GANTC 1 cut(s) 207
Hpy188I TCNGA 1 cut(s) 30
HpyAV CCTTC 1 cut(s) 179
HpyCH4III ACNGT 1 cut(s) 198
HpyCH4V TGCA 2 cut(s) 202, 275
HpyF10VI GCNNNNNNNGC 4 cut(s) 199, 254, 263, 272
HpyF3I CTNAG 2 cut(s) 149, 261
Hsp92II CATG 1 cut(s) 215
HspAI GCGC 1 cut(s) 117
Lsp1109I GCAGC 1 cut(s) 266
LweI GCATC 2 cut(s) 104, 262
MaeI CTAG 1 cut(s) 245
MaeIII GTNAC 1 cut(s) 82
MbiI CCGCTC 1 cut(s) 155
MboII GAAGA 3 cut(s) 23, 26, 47
MluCI AATT 1 cut(s) 170
MlyI GAGTC 1 cut(s) 216
MnlI CCTC 1 cut(s) 10
MseI TTAA 2 cut(s) 102, 234
MslI CAYNNNNRTG 1 cut(s) 216
MwoI GCNNNNNNNGC 4 cut(s) 199, 254, 263, 272
NdeI CATATG 1 cut(s) 181
NlaIII CATG 1 cut(s) 215
NmuCI GTSAC 1 cut(s) 82
NsbI TGCGCA 1 cut(s) 118
PkrI GCNGC 2 cut(s) 157, 256
PleI GAGTC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 215
RseI CAYNNNNRTG 1 cut(s) 216
SaqAI TTAA 2 cut(s) 102, 234
SatI GCNGC 2 cut(s) 156, 255
SchI GAGTC 1 cut(s) 216
SetI ASST 4 cut(s) 21, 84, 195, 262
SfaNI GCATC 2 cut(s) 104, 262
SgeI CNNG 9 cut(s) 34, 62, 74, 91, 103, 202, 215, 224, 257
SmiMI CAYNNNNRTG 1 cut(s) 216
Sse9I AATT 1 cut(s) 170
SsiI CCGC 2 cut(s) 155, 166
SspMI CTAG 1 cut(s) 245
TaaI ACNGT 1 cut(s) 198
TaqI TCGA 1 cut(s) 21
TasI AATT 1 cut(s) 170
TauI GCSGC 1 cut(s) 158
Tru1I TTAA 2 cut(s) 102, 234
Tru9I TTAA 2 cut(s) 102, 234
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 1 cut(s) 254
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 2 cut(s) 17, 198
XapI RAATTY 1 cut(s) 170
XspI CTAG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.