MD05G1048500.v1.1

Costars family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0016154
Physical Location & Seq
Reverse (-)
8233912 .. 8235317
1406 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1048500.v1.1.491

Sequence Viewer

Length: 288 bp
ATGAATGTAGAAGAAGAGGTCGAGCGTCTCAGAGAAGAAATCCAAAGGCTTGGCAAACTCCAAGAAGATGGTTCTTACAAGGTCACATTTGGTGTGCTATTTAATGATGATAGATGCGCAAACATATTTGAAGCGTTGGTTGGGACGCTAAGAGCGGCAAAGAGGCGGAAATTTCTCACGTACGATGGTGAGCTACTGCTGCAGGGTGTCCACGACAACGTGGAGATCGTACTCAAACCAAAACCGGCAGCGGCGGCGGAGGCAACTGCTGCAGTCGGGACAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Costars

Protein Analysis

96

Amino Acids

10.53

Weight (kDa)

5.17

Isoelectric Point (pI)

47.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Costars PF14705 2 - 78 4.8e-29 Costars
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016154)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33640
fragaria_vesca FvH4_2g11550
malus_domestica MD05G1048500.v1.1 MD10G1054900.v1.1
prunus_persica Prupe.8G071000_v2.0.a1
pyrus_communis pycom05g04010 pycom10g04190
rosa_chinensis RchiOBHm_Chr6g0270691
rosa_multiflora Rmu_sc0000642.1_g000003
rosa_roxburghii Rroxscaffold_7G00197680
rosa_rugosa Rorug06G0055900
rosa_samantha Rh6AG175100 Rh6BG178500 Rh6DG166900
rosa_wichuraiana Rw6G014920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 118
AccBSI CCGCTC 1 cut(s) 155
AciI CCGC 5 cut(s) 155, 166, 251, 254, 257
AcsI RAATTY 1 cut(s) 170
AfaI GTAC 2 cut(s) 182, 231
AgsI TTSAA 1 cut(s) 131
AjuI GAANNNNNNNTTGG 2 cut(s) 123, 155
AluBI AGCT 1 cut(s) 193
AluI AGCT 1 cut(s) 193
Alw26I GTCTC 1 cut(s) 32
ApeKI GCWGC 3 cut(s) 199, 248, 269
ApoI RAATTY 1 cut(s) 170
AspLEI GCGC 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 200
BbvI GCAGC 3 cut(s) 186, 256, 260
BccI CCATC 2 cut(s) 62, 179
BcoDI GTCTC 1 cut(s) 32
BfmI CTRYAG 2 cut(s) 200, 270
BisI GCNGC 6 cut(s) 156, 200, 249, 252, 255, 270
BlsI GCNGC 6 cut(s) 157, 201, 250, 253, 256, 271
BmsI GCATC 1 cut(s) 104
BsaAI YACGTR 1 cut(s) 180
Bse118I RCCGGY 1 cut(s) 244
BseMII CTCAG 1 cut(s) 43
BseXI GCAGC 3 cut(s) 186, 256, 260
BsiSI CCGG 1 cut(s) 245
BsiWI CGTACG 1 cut(s) 180
BslFI GGGAC 1 cut(s) 157
BsmAI GTCTC 1 cut(s) 32
BsmBI CGTCTC 1 cut(s) 32
BsmFI GGGAC 1 cut(s) 157
Bsp143I GATC 1 cut(s) 225
BspACI CCGC 5 cut(s) 155, 166, 251, 254, 257
BspCNI CTCAG 1 cut(s) 42
BspMAI CTGCAG 2 cut(s) 204, 274
BsrBI CCGCTC 1 cut(s) 155
BsrFI RCCGGY 1 cut(s) 244
BssAI RCCGGY 1 cut(s) 244
BssMI GATC 1 cut(s) 225
Bst6I CTCTTC 1 cut(s) 9
BstAPI GCANNNNNTGC 1 cut(s) 269
BstBAI YACGTR 1 cut(s) 180
BstDEI CTNAG 2 cut(s) 29, 149
BstHHI GCGC 1 cut(s) 119
BstKTI GATC 1 cut(s) 228
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 1 cut(s) 225
BstMWI GCNNNNNNNGC 4 cut(s) 199, 254, 260, 269
BstSFI CTRYAG 2 cut(s) 200, 270
BstV1I GCAGC 3 cut(s) 186, 256, 260
BstXI CCANNNNNNTGG 2 cut(s) 50, 68
CfoI GCGC 1 cut(s) 119
Cfr10I RCCGGY 1 cut(s) 244
CseI GACGC 2 cut(s) 14, 154
Csp6I GTAC 2 cut(s) 181, 230
CviJI RGCY 2 cut(s) 49, 193
CviKI_1 RGCY 2 cut(s) 49, 193
CviQI GTAC 2 cut(s) 181, 230
DdeI CTNAG 2 cut(s) 29, 149
DpnI GATC 1 cut(s) 227
DpnII GATC 1 cut(s) 225
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
EciI GGCGGA 2 cut(s) 181, 272
Esp3I CGTCTC 1 cut(s) 32
FaiI YATR 1 cut(s) 125
FaqI GGGAC 1 cut(s) 157
Fnu4HI GCNGC 6 cut(s) 156, 200, 249, 252, 255, 270
Fsp4HI GCNGC 6 cut(s) 156, 200, 249, 252, 255, 270
FspI TGCGCA 1 cut(s) 118
GlaI GCGC 1 cut(s) 118
GluI GCNGC 6 cut(s) 156, 200, 249, 252, 255, 270
HapII CCGG 1 cut(s) 245
HgaI GACGC 2 cut(s) 14, 154
HhaI GCGC 1 cut(s) 119
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HpaII CCGG 1 cut(s) 245
HphI GGTGA 1 cut(s) 200
Hpy166II GTNNAC 1 cut(s) 211
Hpy188I TCNGA 1 cut(s) 32
Hpy188III TCNNGA 1 cut(s) 277
Hpy8I GTNNAC 1 cut(s) 211
HpyCH4IV ACGT 2 cut(s) 179, 219
HpyCH4V TGCA 2 cut(s) 202, 272
HpyF10VI GCNNNNNNNGC 4 cut(s) 199, 254, 260, 269
HpyF3I CTNAG 2 cut(s) 29, 149
HpySE526I ACGT 2 cut(s) 179, 219
HspAI GCGC 1 cut(s) 117
Kzo9I GATC 1 cut(s) 225
LpnPI CCDG 2 cut(s) 188, 258
Lsp1109I GCAGC 3 cut(s) 186, 256, 260
LweI GCATC 1 cut(s) 104
MaeII ACGT 2 cut(s) 179, 219
MaeIII GTNAC 1 cut(s) 82
MalI GATC 1 cut(s) 227
MbiI CCGCTC 1 cut(s) 155
MboI GATC 1 cut(s) 225
MboII GAAGA 4 cut(s) 23, 26, 47, 77
MluCI AATT 1 cut(s) 170
MnlI CCTC 3 cut(s) 10, 156, 253
MseI TTAA 1 cut(s) 102
MspA1I CMGCKG 1 cut(s) 251
MspI CCGG 1 cut(s) 245
MwoI GCNNNNNNNGC 4 cut(s) 199, 254, 260, 269
NdeII GATC 1 cut(s) 225
NmuCI GTSAC 1 cut(s) 82
NsbI TGCGCA 1 cut(s) 118
PcsI WCGNNNNNNNCGW 1 cut(s) 225
Pfl23II CGTACG 1 cut(s) 180
PkrI GCNGC 6 cut(s) 157, 201, 250, 253, 256, 271
Ppu21I YACGTR 1 cut(s) 180
PspLI CGTACG 1 cut(s) 180
PstI CTGCAG 2 cut(s) 204, 274
RsaI GTAC 2 cut(s) 182, 231
RsaNI GTAC 2 cut(s) 181, 230
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 6 cut(s) 156, 200, 249, 252, 255, 270
Sau3AI GATC 1 cut(s) 225
SetI ASST 5 cut(s) 21, 84, 182, 195, 222
SfaNI GCATC 1 cut(s) 104
SfcI CTRYAG 2 cut(s) 200, 270
SgeI CNNG 9 cut(s) 34, 62, 74, 91, 190, 215, 224, 232, 257
Sse9I AATT 1 cut(s) 170
SsiI CCGC 5 cut(s) 155, 166, 251, 254, 257
TaiI ACGT 2 cut(s) 182, 222
TaqI TCGA 1 cut(s) 21
TasI AATT 1 cut(s) 170
TauI GCSGC 3 cut(s) 158, 254, 257
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 3 cut(s) 199, 248, 269
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.