Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016043

Physical Location & Seq

Genomic Coordinates Reverse (-)

16372333 .. 16373736

Gene Structure 1404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G34190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCCTTATCTCAAGTGTCTGCGTCTCTCGCCTTTTCTCTTCCCAATTCTGGTGCCCTAAAGCTAGCCACAATCACAAACCCAACTTCTACATGTCGGGTTCATGTTCCGCAACTTGCTGGAATCCGATCCACCTTCGCTTCTGGTTCTCCTCTCTTGCCATTGAAGTTGAGTATGACCCGTAGAGGAGGAAACAGAGCAGCATCAGTTTCCATAAGAAGTGAGCAAAGTACAGAAGGAAGCAGTGGTTTGGATATATGGCTTGGTCGTGGCGCCATGGTTGGTTTTGCAGTTGCCATTACTGTTGAGATTTCCACTGGAAAAGGACTTCTTGAGAATTTTGGAGTAGCAAGTCCATTGCCTACGGTTGCTTTAGCTGTTACAGCATTGGTTGGTGTTCTAGCTGCGGTTTTCATCTTCCAATCTTCTTCTAAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009987 GO:0016020 GO:0016168 GO:0031976 GO:0031984 GO:0034357 GO:0034644 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055035 GO:0055085 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071484 GO:0071486 GO:0071492 GO:0097159 GO:0104004 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

14.86

Weight (kDa)

10.87

Isoelectric Point (pI)

40.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

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Orthologous Genes (Group: OG0016043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34190
fragaria_vesca	FvH4_2g05321
malus_domestica	MD05G1088100.v1.1
prunus_persica	Prupe.8G134100_v2.0.a1
pyrus_communis	pycom05g08750 pycom10g08230
rosa_chinensis	RchiOBHm_Chr6g0255531
rosa_laevigata	RLG00000014833
rosa_multiflora	Rmu_sc0006202.1_g000006
rosa_roxburghii	Rroxscaffold_7G00209910
rosa_rugosa	Rorug05G0559200
rosa_samantha	Rh6AG077700 Rh6CG068600 Rh6DG065400
rosa_wichuraiana	Rw6G006690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	53, 272
AciI	CCGC	2 cut(s)	110, 407
AclWI	GGATC	1 cut(s)	123
AcsI	RAATTY	1 cut(s)	337
AcyI	GRCGYC	1 cut(s)	273
AfaI	GTAC	1 cut(s)	232
AfiI	CCNNNNNNNGG	1 cut(s)	50
AflIII	ACRYGT	1 cut(s)	92
AgsI	TTSAA	1 cut(s)	166
AluBI	AGCT	3 cut(s)	64, 377, 404
AluI	AGCT	3 cut(s)	64, 377, 404
Alw26I	GTCTC	1 cut(s)	30
AlwI	GGATC	1 cut(s)	123
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	200, 404
ApoI	RAATTY	1 cut(s)	337
AspLEI	GCGC	1 cut(s)	275
AsuNHI	GCTAGC	1 cut(s)	64
BaeGI	GKGCMC	1 cut(s)	58
BanI	GGYRCC	2 cut(s)	53, 272
BbvI	GCAGC	2 cut(s)	212, 391
BcoDI	GTCTC	1 cut(s)	30
BfaI	CTAG	2 cut(s)	65, 401
BfoI	RGCGCY	1 cut(s)	276
BisI	GCNGC	2 cut(s)	201, 405
BlsI	GCNGC	2 cut(s)	202, 406
BmiI	GGNNCC	2 cut(s)	55, 274
BmsI	GCATC	1 cut(s)	212
BmtI	GCTAGC	1 cut(s)	68
BpuEI	CTTGAG	1 cut(s)	353
BsaHI	GRCGYC	1 cut(s)	273
BsaJI	CCNNGG	1 cut(s)	276
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse1I	ACTGG	1 cut(s)	322
Bse3DI	GCAATG	1 cut(s)	356
BseDI	CCNNGG	1 cut(s)	276
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMI	GCAATG	1 cut(s)	356
BseNI	ACTGG	1 cut(s)	322
BseRI	GAGGAG	2 cut(s)	141, 201
BseSI	GKGCMC	1 cut(s)	58
BseXI	GCAGC	2 cut(s)	212, 391
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	2 cut(s)	53, 272
BslI	CCNNNNNNNGG	1 cut(s)	50
BsmAI	GTCTC	1 cut(s)	30
BsmBI	CGTCTC	1 cut(s)	30
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp143I	GATC	1 cut(s)	128
Bsp19I	CCATGG	1 cut(s)	276
BspACI	CCGC	2 cut(s)	110, 407
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	2 cut(s)	55, 274
BspOI	GCTAGC	1 cut(s)	68
BspPI	GGATC	1 cut(s)	123
BspT107I	GGYRCC	2 cut(s)	53, 272
BsrDI	GCAATG	1 cut(s)	356
BsrI	ACTGG	1 cut(s)	322
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	1 cut(s)	128
BssNI	GRCGYC	1 cut(s)	273
BssT1I	CCWWGG	1 cut(s)	276
Bst4CI	ACNGT	2 cut(s)	304, 367
Bst6I	CTCTTC	1 cut(s)	45
BstACI	GRCGYC	1 cut(s)	273
BstC8I	GCNNGC	1 cut(s)	66
BstDSI	CCRYGG	1 cut(s)	276
BstH2I	RGCGCY	1 cut(s)	276
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	1 cut(s)	131
BstMAI	GTCTC	1 cut(s)	30
BstMBI	GATC	1 cut(s)	128
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 383
BstNSI	RCATGY	1 cut(s)	96
BstSLI	GKGCMC	1 cut(s)	58
BstV1I	GCAGC	2 cut(s)	212, 391
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	276
BtsI	GCAGTG	1 cut(s)	250
BtsIMutI	CAGTG	2 cut(s)	250, 315
Cac8I	GCNNGC	1 cut(s)	66
CfoI	GCGC	1 cut(s)	275
CseI	GACGC	1 cut(s)	12
Csp6I	GTAC	1 cut(s)	231
CviAII	CATG	3 cut(s)	93, 104, 277
CviJI	RGCY	6 cut(s)	5, 64, 68, 262, 377, 404
CviKI_1	RGCY	6 cut(s)	5, 64, 68, 262, 377, 404
CviQI	GTAC	1 cut(s)	231
DinI	GGCGCC	1 cut(s)	274
DpnI	GATC	1 cut(s)	130
DpnII	GATC	1 cut(s)	128
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Eco130I	CCWWGG	1 cut(s)	276
EcoT14I	CCWWGG	1 cut(s)	276
EgeI	GGCGCC	1 cut(s)	274
EheI	GGCGCC	1 cut(s)	274
ErhI	CCWWGG	1 cut(s)	276
Esp3I	CGTCTC	1 cut(s)	30
FaeI	CATG	3 cut(s)	96, 107, 280
FaiI	YATR	7 cut(s)	94, 105, 176, 215, 257, 259, 278
FalI	AAGNNNNNCTT	2 cut(s)	315, 347
FatI	CATG	3 cut(s)	92, 103, 276
Fnu4HI	GCNGC	2 cut(s)	201, 405
Fsp4HI	GCNGC	2 cut(s)	201, 405
FspBI	CTAG	2 cut(s)	65, 401
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	2 cut(s)	201, 405
HaeII	RGCGCY	1 cut(s)	276
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	1 cut(s)	12
HhaI	GCGC	1 cut(s)	275
Hin1I	GRCGYC	1 cut(s)	273
Hin1II	CATG	3 cut(s)	96, 107, 280
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HinfI	GANTC	1 cut(s)	123
Hpy188I	TCNGA	1 cut(s)	128
Hpy188III	TCNNGA	1 cut(s)	332
HpyAV	CCTTC	2 cut(s)	145, 230
HpyCH4III	ACNGT	2 cut(s)	304, 367
HpyCH4V	TGCA	1 cut(s)	290
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 383
Hsp92I	GRCGYC	1 cut(s)	273
Hsp92II	CATG	3 cut(s)	96, 107, 280
HspAI	GCGC	1 cut(s)	273
KasI	GGCGCC	1 cut(s)	272
Kzo9I	GATC	1 cut(s)	128
LpnPI	CCDG	4 cut(s)	36, 105, 129, 303
Lsp1109I	GCAGC	2 cut(s)	212, 391
LweI	GCATC	1 cut(s)	212
MaeI	CTAG	2 cut(s)	65, 401
MaeIII	GTNAC	1 cut(s)	379
MalI	GATC	1 cut(s)	130
MboI	GATC	1 cut(s)	128
MboII	GAAGA	4 cut(s)	32, 409, 417, 420
MhlI	GDGCHC	1 cut(s)	58
MluCI	AATT	2 cut(s)	46, 337
Mly113I	GGCGCC	1 cut(s)	273
MnlI	CCTC	3 cut(s)	162, 179, 182
MwoI	GCNNNNNNNGC	2 cut(s)	29, 383
NarI	GGCGCC	1 cut(s)	273
NcoI	CCATGG	1 cut(s)	276
NdeII	GATC	1 cut(s)	128
NheI	GCTAGC	1 cut(s)	64
NlaIII	CATG	3 cut(s)	96, 107, 280
NlaIV	GGNNCC	2 cut(s)	55, 274
NspI	RCATGY	1 cut(s)	96
PciI	ACATGT	1 cut(s)	92
PfeI	GAWTC	1 cut(s)	123
PkrI	GCNGC	2 cut(s)	202, 406
PluTI	GGCGCC	1 cut(s)	276
PscI	ACATGT	1 cut(s)	92
PspN4I	GGNNCC	2 cut(s)	55, 274
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
SatI	GCNGC	2 cut(s)	201, 405
Sau3AI	GATC	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	58
SetI	ASST	4 cut(s)	66, 137, 379, 406
SfaNI	GCATC	1 cut(s)	212
SfoI	GGCGCC	1 cut(s)	274
SmlI	CTYRAG	2 cut(s)	12, 332
SmoI	CTYRAG	2 cut(s)	12, 332
Sse9I	AATT	2 cut(s)	46, 337
SsiI	CCGC	2 cut(s)	110, 407
SspDI	GGCGCC	1 cut(s)	272
SspMI	CTAG	2 cut(s)	65, 401
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	2 cut(s)	304, 367
TasI	AATT	2 cut(s)	46, 337
TatI	WGTACW	1 cut(s)	230
TfiI	GAWTC	1 cut(s)	123
TscAI	CASTG	2 cut(s)	250, 322
TseI	GCWGC	2 cut(s)	200, 404
TspDTI	ATGAA	2 cut(s)	92, 403
TspRI	CASTG	2 cut(s)	250, 322
XapI	RAATTY	1 cut(s)	337
XceI	RCATGY	1 cut(s)	96
XspI	CTAG	2 cut(s)	65, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.